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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1105 fasta sequence
[CGCTCTCACCCCCACTCCCACTCCCAAGCGCCAAGCACCTCTCCGCCATTGATGGACTTGTCGAGCTCCAAGGAGGCGACGCCTCCTCCCGAGGCGTGGTGGACGGGGGAGACGGTGGCGGTGGTGACGGGGGCGAACCGCGGGATCGGGCACGCGCTGGCGGCGCGGCTGGCGGAGCAAGGGCTGGCCGTGGTGCTGACGGCGCGGGACGGGGCGCGCGGGGAGGCGGCCGCGGCGGCGCTCCGCGCGAGGGGCCTCCGCTCCGTCCGGTTCCGCCGCCTCGACGTCTCCGATCCGGCCTCCGTCGCCGCCTTCGCCTCCTGGCTCCGCGACGAACTCGGCGGCCTCGACATCCTGGTGAACAACGCTGCCGTTTCGTTCAACGAGATCGACACCAATTCGGTGGAGCACGCTGAGACGGTGCTCAGGACCAACTTCTACGGGGCCAAGATGCTCATCGAGGCGCTCCTGCCGCTTTTCCGGCGATCGGCTGCCAACAGCAGGATCCTGAACATCAGCTCCCAGCTTGGCCTCCTAAATAAGGTGAGGGACCCGTCGCTGCGGAGCATGCTGCTGGACGAGGCGTCGCTGACGGAGGGGAAGATCGAGCGGATGGCGTCGCGGTTCCTGGCCGAGGTGAAGGACGGGACGTGGTCGGCGCCGGGGCGCGGGTGGCCGGCGGTGTGGACGGACTACGCGGTGTCCAAGCTCGCGCTCAACGCCTACTCGCGCGTCCTCGCCGCCCGCCTCGCCCGAGGCGGCGACCGCGTCGCCGTCAACTGCTTCTGCCCCGGGTTCACGCGCACCGACATGACCCGCGGCTGGGGCACCCGCACCGCCGAGGAGGCCGGCCGCGTCGCCGCCGGCCTCGCGCTGCTCCCGCCCGGCGACCTCCCCACCGGCAAGTTCTTCAAGTGGTGCACGCCCCAGCTCTACTCCAAGCTGTGAAACTGTCAGCGACATGCTAGGCTCCTGAGCTCCTCATGGTAATATGAGAGAAAACTACTGCAAATTTAGAGAGGAAAATTAAGCATGAGTTGCTTAAGCATCAACCCTGTCAGTTGACAGTGAAAATATATAGTACCACTATATGGCAGTATGCGTC]
[+] EMBL AK109261 [CGCTCTCACCCCCACTCCCACTCCCAAGCGCCAAGCACCTCTCCGCCATTGATGGACTTGTCGAGCTCCAAGGAGGCGACGCCTCCTCCCGAGGCGTGGTGGACGGGGGAGACGGTGGCGGTGGTGACGGGGGCGAACCGCGGGATCGGGCACGCGCTGGCGGCGCGGCTGGCGGAGCAAGGGCTGGCCGTGGTGCTGACGGCGCGGGACGGGGCGCGCGGGGAGGCGGCCGCGGCGGCGCTCCGCGCGAGGGGCCTCCGCTCCGTCCGGTTCCGCCGCCTCGACGTCTCCGATCCGGCCTCCGTCGCCGCCTTCGCCTCCTGGCTCCGCGACGAACTCGGCGGCCTCGACATCCTGGTGAACAACGCTGCCGTTTCGTTCAACGAGATCGACACCAATTCGGTGGAGCACGCTGAGACGGTGCTCAGGACCAACTTCTACGGGGCCAAGATGCTCATCGAGGCGCTCCTGCCGCTTTTCCGGCGATCGGCTGCCAACAGCAGGATCCTGAACATCAGCTCCCAGCTTGGCCTCCTAAATAAGGTGAGGGACCCGTCGCTGCGGAGCATGCTGCTGGACGAGGCGTCGCTGACGGAGGGGAAGATCGAGCGGATGGCGTCGCGGTTCCTGGCCGAGGTGAAGGACGGGACGTGGTCGGCGCCGGGGCGCGGGTGGCCGGCGGTGTGGACGGACTACGCGGTGTCCAAGCTCGCGCTCAACGCCTACTCGCGCGTCCTCGCCGCCCGCCTCGCCCGAGGCGGCGACCGCGTCGCCGTCAACTGCTTCTGCCCCGGGTTCACGCGCACCGACATGACCCGCGGCTGGGGCACCCGCACCGCCGAGGAGGCCGGCCGCGTCGCCGCCGGCCTCGCGCTGCTCCCGCCCGGCGACCTCCCCACCGGCAAGTTCTTCAAGTGGTGCACGCCCCAGCTCTACTCCAAGCTGTGAAACTGTCAGCGACATGCTAGGCTCCTGAGCTCCTCATGGTAATATGAGAGAAAACTACTGCAAATTTAGAGAGGAAAATTAAGCATGAGTTGCTTAAGCATCAACCCTGTCAGTTGACAGTGAAAATATATAGTACCACTATATGGCAGTATGCGTC]
consensusID : consensus_4616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 791 fasta sequence
[AACGAATCTAACCTGCCTTTGAAAGGGAATTTCGGCATCGAAGTTTCTCTATCTGCAGCAGATATCCTCGCGCGCACCCACACACACACACAAAAAAAAAACAAAAAGTGAGATTCGAGATATGTTTTTCTCGTTGTGATGATGGATTGGCTGCGTGTTTGTGCTGCAGAAGGTGAGCGACCCGGAGCTGAAGCGGCTGCTCCAGGACGAGGAGAGGCTGACGGAGGCGGAGGTGGAGGGGATGGCGTCGCGGTTCCTGGCGCAGGTGAAGGACGGGACGTGGCGCGGGCAGGGGTGGCCCAAGGTGTGGACGGACTACTCGGTGTCCAAGCTGGCCCTGAACGCGTACGCGCGGGTGCTGGCGCGGCGGCTGCAGGCGCGCGGCGACCGGGTGAGCGTCAACTGCTTCTGCCCCGGGTTCACGCGGACGGACATGACCCGCGGCTGGGGGAAGCGCACCGCGGAGGAGGCTGCCGAGATCGGGGCGCGCCTCGCCCTGCTCCCGCCCGGCGAGCTCCCCACGGGCACCTTCTTCAAGTGGTGCACGCCGCAGCTCTACTCCAAGCTCTGACGGCCGCCGCGCCGCGCGAGCCGCGAGGCATCCGTGTAGTGCGGTGCGGTTTGTAATTGTGCGGACAAGCGCCTCGCGCCCTCGCCGTCCTGTGCCGCGCGGTCTCAGCAACGAGCTCAATTACTGTGTATACTTAGTAGGTGTGTGACCGTCCAGCTGAATATATGTTCAGAATCAGATCCAACATTAGCAGAGCGAAATCGGTAGCGCGGCCGCTTTA]
[+] EMBL AK105166 [AACGAATCTAACCTGCCTTTGAAAGGGAATTTCGGCATCGAAGTTTCTCTATCTGCAGCAGATATCCTCGCGCGCACCCACACACACACACAAAAAAAAAACAAAAAGTGAGATTCGAGATATGTTTTTCTCGTTGTGATGATGGATTGGCTGCGTGTTTGTGCTGCAGAAGGTGAGCGACCCGGAGCTGAAGCGGCTGCTCCAGGACGAGGAGAGGCTGACGGAGGCGGAGGTGGAGGGGATGGCGTCGCGGTTCCTGGCGCAGGTGAAGGACGGGACGTGGCGCGGGCAGGGGTGGCCCAAGGTGTGGACGGACTACTCGGTGTCCAAGCTGGCCCTGAACGCGTACGCGCGGGTGCTGGCGCGGCGGCTGCAGGCGCGCGGCGACCGGGTGAGCGTCAACTGCTTCTGCCCCGGGTTCACGCGGACGGACATGACCCGCGGCTGGGGGAAGCGCACCGCGGAGGAGGCTGCCGAGATCGGGGCGCGCCTCGCCCTGCTCCCGCCCGGCGAGCTCCCCACGGGCACCTTCTTCAAGTGGTGCACGCCGCAGCTCTACTCCAAGCTCTGACGGCCGCCGCGCCGCGCGAGCCGCGAGGCATCCGTGTAGTGCGGTGCGGTTTGTAATTGTGCGGACAAGCGCCTCGCGCCCTCGCCGTCCTGTGCCGCGCGGTCTCAGCAACGAGCTCAATTACTGTGTATACTTAGTAGGTGTGTGACCGTCCAGCTGAATATATGTTCAGAATCAGATCCAACATTAGCAGAGCGAAATCGGTAGCGCGGCCGCTTTA]
consensusID : consensus_4616#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence
[CTAATGAATCCAAACGATATCTTACATTATGGAATCGAGGGAATAGTATTTTACTCCATGTTGTTATACGCGAGAGTAAAACATTGTTGAATTAATAATCAGCGTTTTTTTTTTTGGGGGCATGGTGCAGAAGGTGAGGGACCCGTCGCTGCGGAGCATGCTGCTGGACGAGGCGTCGCTGACGGAGGGGAAGATCGAGCGGATGGCGTCGCGGTTCCTGGCCGAGGTGAAGGACGGGACGTGGTCGGCGCCGGGGCGCGGGTGGCCGGCGGTGTGGACGGACTACGCGGTGTCCAAGCTCGCGCTCAACGCCTACTCGCGCGTCCTCGCCGCCCGCCTCGCCCGAGGCGGCGACCGCGTCCCCGTCAACTGCTTCTGCCCCGGGTTCACGCGCACCGACATGACCCGCGGCTGGGGCACCCGCACCGCCGAGGAGGCCGGCCGCGTCGCCACCGGCCTCGCGCTGCTCCCGCCCGGCGACCTCCCCACCGGCAAGTTCTTCAAGTGGTGCACGCCCCAGCTCTACTCCAAGCTGTGAAACTGTCAGCGACATGCTAGGCTCCTGAGCTCCTCATGGTAATATGAGC]
[-] EMBL CF326724 [CTAATGAATCCAAACGATATCTTACATTATGGAATCGAGGGAATAGTATTTTACTCCATGTTGTTATACGCGAGAGTAAAACATTGTTGAATTAATAATCAGCGTTTTTTTTTTTGGGGGCATGGTGCAGAAGGTGAGGGACCCGTCGCTGCGGAGCATGCTGCTGGACGAGGCGTCGCTGACGGAGGGGAAGATCGAGCGGATGGCGTCGCGGTTCCTGGCCGAGGTGAAGGACGGGACGTGGTCGGCGCCGGGGCGCGGGTGGCCGGCGGTGTGGACGGACTACGCGGTGTCCAAGCTCGCGCTCAACGCCTACTCGCGCGTCCTCGCCGCCCGCCTCGCCCGAGGCGGCGACCGCGTCCCCGTCAACTGCTTCTGCCCCGGGTTCACGCGCACCGACATGACCCGCGGCTGGGGCACCCGCACCGCCGAGGAGGCCGGCCGCGTCGCCACCGGCCTCGCGCTGCTCCCGCCCGGCGACCTCCCCACCGGCAAGTTCTTCAAGTGGTGCACGCCCCAGCTCTACTCCAAGCTGTGAAACTGTCAGCGACATGCTAGGCTCCTGAGCTCCTCATGGTAATATGAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4616#0 CGCTCTCACCCCCACTCCCACTCCCAAGCGCCAAGCACCTCTCCGCCATTGATGGACTTG 60
consensus_4616#2 ------------------------------------------------------------
consensus_4616#1 ------------------------------------------------------------
consensus_4616#0 TCGAGCTCCAAGGAGGCGACGCCTCCTCCCGAGGCGTGGTGGACGGGGGAGACGGTGGCG 120
consensus_4616#2 ------------------------------------------------------------
consensus_4616#1 ------------------------------------------------------------
consensus_4616#0 GTGGTGACGGGGGCGAACCGCGGGATCGGGCACGCGCTGGCGGCGCGGCTGGCGGAGCAA 180
consensus_4616#2 ------------------------------------------------------------
consensus_4616#1 ------------------------------------------------------------
consensus_4616#0 GGGCTGGCCGTGGTGCTGACGGCGCGGGACGGGGCGCGCGGGGAGGCGGCCGCGGCGGCG 240
consensus_4616#2 ------------------------------------------------------------
consensus_4616#1 ------------------------------------------------------------
consensus_4616#0 CTCCGCGCGAGGGGCCTCCGCTCCGTCCGGTTCCGCCGCCTCGACGTCTCCGATCCGGCC 300
consensus_4616#2 ------------------------------------------------------------
consensus_4616#1 ------------------------------------------------------------
consensus_4616#0 TCCGTCGCCGCCTTCGCCTCCTGGCTCCGCGACGAACTCGGCGGCCTCGACATCCTGGTG 360
consensus_4616#2 ------------------------------------------------------------
consensus_4616#1 ------------------------------------------------------------
consensus_4616#0 AACAACGCTGCCGTTTCGTTCAACGAGATCGACACCAATTCGGTGGAGCACGCTGA-GAC 419
consensus_4616#2 ----------------------------------------------------CTAATGAA 8
consensus_4616#1 AACGAATCTAACCTGCCTTTGAAAGGGAATTTCGGCATCGAAGT----TTCTCTATCTGC 56
**
consensus_4616#0 GGTGCTCAGGACCAACTTCTACGGGGCCAAGATGCTCATCGAGGCGCTCCTGCCGCTTTT 479
consensus_4616#2 TCCAAACGATATCTTACATTATGGAATCGAGGGAATAGTATTTTACTCCATGTTGTTATA 68
consensus_4616#1 AGCAGATATCCTCGCGCGCACCCACACACACACAC-AAAAAAAAAACAAAAAGTGAGATT 115
* * * *
consensus_4616#0 C-CGGCGATCGGCTGCCAACAGCAGGATCCTGAACATCAGCTCCCAGCTTGGCCTCCTAA 538
consensus_4616#2 CGCGAGAGTAAAACATTGTTGAATTAATAATCAGCGTTTTTTTTTTTGGGGGCATGGTGC 128
consensus_4616#1 C---GAGATATGTTTTTCTCGTTGTGATGATGG--ATTGGCTGCGTGTTTG---TGCTGC 167
* * ** * * * * * *
consensus_4616#0 ATAAGGTGAGGGACCCGTCGCTGCGGAGCATGCTGCTGGACGAGGCGTCGCTGACGGAGG 598
consensus_4616#2 AGAAGGTGAGGGACCCGTCGCTGCGGAGCATGCTGCTGGACGAGGCGTCGCTGACGGAGG 188
consensus_4616#1 AGAAGGTGAGCGACCCGGAGCTGAAGCGGCTGCTCCAGGACGAGGAGAGGCTGACGGAGG 227
* ******** ****** **** * * **** * ******** * ***********
consensus_4616#0 GGAAGATCGAGCGGATGGCGTCGCGGTTCCTGGCCGAGGTGAAGGACGGGACGTGGTCGG 658
consensus_4616#2 GGAAGATCGAGCGGATGGCGTCGCGGTTCCTGGCCGAGGTGAAGGACGGGACGTGGTCGG 248
consensus_4616#1 CGGAGGTGGAGGGGATGGCGTCGCGGTTCCTGGCGCAGGTGAAGGACGGGACGTGG---- 283
* ** * *** ********************** ********************
consensus_4616#0 CGCCGGGGCGCGGGTGGCCGGCGGTGTGGACGGACTACGCGGTGTCCAAGCTCGCGCTCA 718
consensus_4616#2 CGCCGGGGCGCGGGTGGCCGGCGGTGTGGACGGACTACGCGGTGTCCAAGCTCGCGCTCA 308
consensus_4616#1 CGC--GGGCAGGGGTGGCCCAAGGTGTGGACGGACTACTCGGTGTCCAAGCTGGCCCTGA 341
*** **** ******** **************** ************* ** ** *
consensus_4616#0 ACGCCTACTCGCGCGTCCTCGC-CGCCCGCCTCGCCCGAGGCGGCGACCGCGTCGCCGTC 777
consensus_4616#2 ACGCCTACTCGCGCGTCCTCGC-CGCCCGCCTCGCCCGAGGCGGCGACCGCGTCCCCGTC 367
consensus_4616#1 ACGCGTACGCGCGGGTGCTGGCGCGGCGGCTGCAGGCGCG-CGGCGACCGGGTGAGCGTC 400
**** *** **** ** ** ** ** * ** * ** * ********* ** ****
consensus_4616#0 AACTGCTTCTGCCCCGGGTTCACGCGCACCGACATGACCCGCGGCTGGGGCACCCGCACC 837
consensus_4616#2 AACTGCTTCTGCCCCGGGTTCACGCGCACCGACATGACCCGCGGCTGGGGCACCCGCACC 427
consensus_4616#1 AACTGCTTCTGCCCCGGGTTCACGCGGACGGACATGACCCGCGGCTGGGGGAAGCGCACC 460
************************** ** ******************** * ******
consensus_4616#0 GCCGAGGAGGCCGGCCGCGTCGCCGCCGGCCTCGCGCTGCTCCCGCCCGGCGACCTCCCC 897
consensus_4616#2 GCCGAGGAGGCCGGCCGCGTCGCCACCGGCCTCGCGCTGCTCCCGCCCGGCGACCTCCCC 487
consensus_4616#1 GCGGAGGAGGCTGCCGAGATCGGGGCGCGCCTCGCCCTGCTCCCGCCCGGCGAGCTCCCC 520
** ******** * * *** * ******* ***************** ******
consensus_4616#0 ACCGGCAAGTTCTTCAAGTGGTGCACGCCCCAGCTCTACTCCAAGCTGTGAAACTGTCAG 957
consensus_4616#2 ACCGGCAAGTTCTTCAAGTGGTGCACGCCCCAGCTCTACTCCAAGCTGTGAAACTGTCAG 547
consensus_4616#1 ACGGGCACCTTCTTCAAGTGGTGCACGCCGCAGCTCTACTCCAAGCTCTGACGGCCGCCG 580
** **** ******************** ***************** *** * *
consensus_4616#0 CGACATGCTAGGCTCCTGAGCTCCTCATGGTAATATGAGAGAAAACTACTGCAAATTTAG 1017
consensus_4616#2 CGACATGCTAGGCTCCTGAGCTCCTCATGGTAATATGAGC-------------------- 587
consensus_4616#1 CGCCGCGCGAGCCGCGAGGCATCCGTGTAGTGCGGTGCGG-----TTTGTAATTGTGCGG 635
** * ** ** * * * *** * ** ** *
consensus_4616#0 AGAGGAAAATTAAGCATGAGTTGCTTAAGCATCAACCCTGTCAGTTGACAGTGAAAATAT 1077
consensus_4616#2 ------------------------------------------------------------
consensus_4616#1 ACAAGCGCCTCGCGCCCTCGCCGTCCTGTGCCGCGCGGTCTCAGCAACGAGCTCAATTAC 695
consensus_4616#0 ATAGTACCACTA-TATGGCAGTATGCGTC------------------------------- 1105
consensus_4616#2 ------------------------------------------------------------
consensus_4616#1 TGTGTATACTTAGTAGGTGTGTGACCGTCCAGCTGAATATATGTTCAGAATCAGATCCAA 755
consensus_4616#0 ------------------------------------
consensus_4616#2 ------------------------------------
consensus_4616#1 CATTAGCAGAGCGAAATCGGTAGCGCGGCCGCTTTA 791
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||