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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1206 fasta sequence
[AGCTTAAGCTTATTAGCTCCTGAGAGTGAAGCCCCTATAGCTGATCGAAGCTATGAAGAAGATGTGGCGCGCCAACGCGAGAGTGGTGGAAAGGAGAGGTGGTCGCGAGGCCGAGGAGAGAGGGGGAGTAATTAGCGTGGTGCTTGCCCATGGCTATGGCGCGAGCCAGGCGGTGTGGGACAAGCTCGTGCCCTCCCTCTCCAAGGGCCACAACCTCCTCCTCTTCGACTGGGACTTCACCGGCGCAGGCGCCGGGAAGGACGACGACGAGTACACTTACGGCAGGTTCGCCGACGAGCTCATCGCGGTGATGGAGGAGCGGGGCGTGGGCGCGTCGGGCGCGGTGGTGGTGGCGCACTCCATGTCCGCCATGGCCGCCTGCATCGCCGCCCAACGGAGACCCGACCTCTTCGCCCACATCTTCCTCGTCTGCGCCTCCCCGAGGTACATAAACTTGGAGGAGGAAGGGTATGTAGGAGGCTTTGAGGAGGCGGCGATCCACGGCATGCTGGCAGCCATGGAGTCGGACTTCGACGGCTGGGTCAGGAGCTTCCTCCCCAACGCCGCCGGCTACGCGTCCGCCGTGGAGCACCTCCTCAAGAGCTTCCTCGCCATGGACCCGACCGTCGCGCTCAAGCTGGCCAAGATGATCTTCCTCGGCGACCAGCGGGAGGTCCTCGACGGCGTGAAGACGCCGTGCACCATCGTCCAGGTGAAGGCCGACTTCGCGGCGCCGCCCAGCGTGGCGGAGTACATGCACCTCAGGATGAAGGGCGCCGCCACGGCCGTCGAGATCATCGGCTCCGTCGGGCACTTCCCCCAGCTCGTCGCGCCGCAGCAGCTGCTGGACATACTCGCCGGCGTCCTGCGCCTCCGGGAGGCGGCGGCGGAGGCGGAGCACGACGACGCCGGCACCGTGGAGATTGCCGGTGGCATCGATGTTGCCATATAGGTTGTGCATCATGCATGCATGCTTGTAAAAAGTCTGCACATATATGCGTCAGAGCTAGCTGCATGTGTGCTCCCTTGTATGTATGTTTGTTTGTTTTGTTTTCAGAGCATGCATTAGTTGTACTATTATGTTTTCCTGTGTAAACATATCATAGAGGTTATGTTACTTGTACACCTGCATGCATGGTTTGGGTATGCTGATGGATGTAAGTACCATTTTCAATGGGACATATACCTTATTTAAAATGTGTTTAA]
[+] EMBL AK067788 [AGCTTAAGCTTATTAGCTCCTGAGAGTGAAGCCCCTATAGCTGATCGAAGCTATGAAGAAGATGTGGCGCGCCAACGCGAGAGTGGTGGAAAGGAGAGGTGGTCGCGAGGCCGAGGAGAGAGGGGGAGTAATTAGCGTGGTGCTTGCCCATGGCTATGGCGCGAGCCAGGCGGTGTGGGACAAGCTCGTGCCCTCCCTCTCCAAGGGCCACAACCTCCTCCTCTTCGACTGGGACTTCACCGGCGCAGGCGCCGGGAAGGACGACGACGAGTACACTTACGGCAGGTTCGCCGACGAGCTCATCGCGGTGATGGAGGAGCGGGGCGTGGGCGCGTCGGGCGCGGTGGTGGTGGCGCACTCCATGTCCGCCATGGCCGCCTGCATCGCCGCCCAACGGAGACCCGACCTCTTCGCCCACATCTTCCTCGTCTGCGCCTCCCCGAGGTACATAAACTTGGAGGAGGAAGGGTATGTAGGAGGCTTTGAGGAGGCGGCGATCCACGGCATGCTGGCAGCCATGGAGTCGGACTTCGACGGCTGGGTCAGGAGCTTCCTCCCCAACGCCGCCGGCTACGCGTCCGCCGTGGAGCACCTCCTCAAGAGCTTCCTCGCCATGGACCCGACCGTCGCGCTCAAGCTGGCCAAGATGATCTTCCTCGGCGACCAGCGGGAGGTCCTCGACGGCGTGAAGACGCCGTGCACCATCGTCCAGGTGAAGGCCGACTTCGCGGCGCCGCCCAGCGTGGCGGAGTACATGCACCTCAGGATGAAGGGCGCCGCCACGGCCGTCGAGATCATCGGCTCCGTCGGGCACTTCCCCCAGCTCGTCGCGCCGCAGCAGCTGCTGGACATACTCGCCGGCGTCCTGCGCCTCCGGGAGGCGGCGGCGGAGGCGGAGCACGACGACGCCGGCACCGTGGAGATTGCCGGTGGCATCGATGTTGCCATATAGGTTGTGCATCATGCATGCATGCTTGTAAAAAGTCTGCACATATATGCGTCAGAGCTAGCTGCATGTGTGCTCCCTTGTATGTATGTTTGTTTGTTTTGTTTTCAGAGCATGCATTAGTTGTACTATTATGTTTTCCTGTGTAAACATATCATAGAGGTTATGTTACTTGTACACCTGCATGCATGGTTTGGGTATGCTGATGGATGTAAGTACCATTTTCAATGGGACAT ]
[+] EMBL BU667354 [ ATGCATGCTTGTAAAAAGTCTGCACATATATGCGTCAGAGCTAGCTGCATGTGTGCTCCCTTGTATGTATGTTTGTTTGTTTTGTTTTCAGA CATGCATTAGTTGTACTATTATGTTTTCCTGTGTAAACATATCATAGAGGTTATGTTACTTGTACACCTGCATGCATGGTTTGGGTATGCTGATGGATGTAAGTACCATTTTC ATGGGACATATACCTTATTTAAAATGTGTTTAA]
consensusID : consensus_4618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 163 fasta sequence
[GCTAGTATGGTTTCCCGGGGATAACATATCATAGAGGTTATGGTACTTGGACACCCCGCACTGCATGGTTTGGGTATGCTGATGGATGTAAGTACCCTTTTCCATGGGACATATCCCCTATTTTAAATGTGGTTTTATTTTCCTGGGGCTGTTAAAAAAAAAA]
[+] EMBL BI812964 [GCTAGTATGGTTTCCCGGGGATAACATATCATAGAGGTTATGGTACTTGGACACCCCGCACTGCATGGTTTGGGTATGCTGATGGATGTAAGTACCCTTTTCCATGGGACATATCCCCTATTTTAAATGTGGTTTTATTTTCCTGGGGCTGTTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4618#0 AGCTTAAGCTTATTAGCTCCTGAGAGTGAAGCCCCTATAGCTGATCGAAGCTATGAAGAA 60
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 GATGTGGCGCGCCAACGCGAGAGTGGTGGAAAGGAGAGGTGGTCGCGAGGCCGAGGAGAG 120
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 AGGGGGAGTAATTAGCGTGGTGCTTGCCCATGGCTATGGCGCGAGCCAGGCGGTGTGGGA 180
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 CAAGCTCGTGCCCTCCCTCTCCAAGGGCCACAACCTCCTCCTCTTCGACTGGGACTTCAC 240
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 CGGCGCAGGCGCCGGGAAGGACGACGACGAGTACACTTACGGCAGGTTCGCCGACGAGCT 300
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 CATCGCGGTGATGGAGGAGCGGGGCGTGGGCGCGTCGGGCGCGGTGGTGGTGGCGCACTC 360
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 CATGTCCGCCATGGCCGCCTGCATCGCCGCCCAACGGAGACCCGACCTCTTCGCCCACAT 420
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 CTTCCTCGTCTGCGCCTCCCCGAGGTACATAAACTTGGAGGAGGAAGGGTATGTAGGAGG 480
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 CTTTGAGGAGGCGGCGATCCACGGCATGCTGGCAGCCATGGAGTCGGACTTCGACGGCTG 540
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 GGTCAGGAGCTTCCTCCCCAACGCCGCCGGCTACGCGTCCGCCGTGGAGCACCTCCTCAA 600
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 GAGCTTCCTCGCCATGGACCCGACCGTCGCGCTCAAGCTGGCCAAGATGATCTTCCTCGG 660
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 CGACCAGCGGGAGGTCCTCGACGGCGTGAAGACGCCGTGCACCATCGTCCAGGTGAAGGC 720
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 CGACTTCGCGGCGCCGCCCAGCGTGGCGGAGTACATGCACCTCAGGATGAAGGGCGCCGC 780
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 CACGGCCGTCGAGATCATCGGCTCCGTCGGGCACTTCCCCCAGCTCGTCGCGCCGCAGCA 840
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 GCTGCTGGACATACTCGCCGGCGTCCTGCGCCTCCGGGAGGCGGCGGCGGAGGCGGAGCA 900
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 CGACGACGCCGGCACCGTGGAGATTGCCGGTGGCATCGATGTTGCCATATAGGTTGTGCA 960
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 TCATGCATGCATGCTTGTAAAAAGTCTGCACATATATGCGTCAGAGCTAGCTGCATGTGT 1020
consensus_4618#1 ------------------------------------------------------------
consensus_4618#0 GCTCCCTTGTATGTATGTTTGTTTGTTTTGTTTTCAGAGCATGCATTAGTTGTACTATTA 1080
consensus_4618#1 -----------------------------------------------------GCTAGTA 7
*** **
consensus_4618#0 TGTTTTCCTGTGTA-AACATATCATAGAGGTTATGTTACTTGTACACCT-GCA-TGCATG 1137
consensus_4618#1 TGGTTTCCCGGGGATAACATATCATAGAGGTTATGGTACTTGGACACCCCGCACTGCATG 67
** ***** * * * ******************** ****** ***** *** ******
consensus_4618#0 GTTTGGGTATGCTGATGGATGTAAGTACCATTTTCAATGGGACATATACCTTATTTAAAA 1197
consensus_4618#1 GTTTGGGTATGCTGATGGATGTAAGTACCCTTTTCCATGGGACATATCCCCTATTTTAAA 127
***************************** ***** *********** ** ***** ***
consensus_4618#0 TGTG-TTTAA-------------------------- 1206
consensus_4618#1 TGTGGTTTTATTTTCCTGGGGCTGTTAAAAAAAAAA 163
**** *** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||