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Oryza sativa
cluster # 4620 cluster # 4620       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4620#0 length = 1525 sequences # 3  

consensusID : consensus_4620#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1525
fasta sequence
                              [TAAACGGGCGGCGTGACGGGGACACACTGCCGACGATCGAACGAACGAACGAACGATGCGTCCCTCCTGGTGCTCCGTCGTCGCCACCCCAGATGGGTCTCCTTGAGGACCTCCTCCTCGCCCCGCGCGTCGACGGCGGTGGCGGCGGCGACGGCGAGGCCATGGCGGCGCCCGACTACGCCATCCCTCCCCTCTCCCCAACCGCCGCCTCCGTCGTCCACCGATGCGCCCGGATCGCCGGCGTGGAGGTGGAGCAGCTGCTGCGGCGGTTCGAGCCGGAGAAGGGGGACCAGCCGCTGGCGTACGCCAGGAGCGTCGTGGAGTACTGCTCCTACATTGCCCTGCGCGTCGAGACCAAGCGCCATGACTACCTCAGCGACAGCGAGTTCCACTCGCTCACCTACGACATGATGATCGCCTGGGAAGCCCCCGACGACGAGACGGACGCCGCGTTGCAGAAAATGTCATTTAGCTTCGTTGACGGCAAGGATGACGACGATTGTGGGTCCATGTTCTGTTTGAGCCCCACACAAATGGCCATTCAGGTTGATGGGAGGAGAACGGTCAGTCCTGAAGCATTTGCCAAGATTATTCCTGCGTGTCCTGCAATGGCACACGCGATCACTGTTCGCAACTTATTTGATGCGCTCACAAACTCTACGGGAGGCCGCCTGCATTTTCTCATCTACCATAAGTACCTCAAATGTTTAGACAAGGTGCTGAGATTTGCGAAACGTATATCAGGTGGACACAAAGCTCCAGCTCTTCAACTTTCTGATGGAGAAGTGATCCTTGATATCTATGGTGCCGCGACAACCAAGCCGATTCTTCAACACATTGGGACGTCCACTTGGCCTGGGAGGCTCACACTGACAACCCATGCTTTGTACTTTGAGCCAGTCAGTGTTGATTTCTCATACAACGAGGCTGTGGTGTATGATCTGTCAAGGGACTTGAAGCAGTCTATAAAACGTGAATCAACTGGCCCATGGGGTGCTCAGCTATTTGACAAAGCTGTCATGTACAAATCTAGCTCTACAAGAGAGCCGGTGTTCTTCGAATTTCCTCAATTCAAAGGTCACACTCGTCGAGACTACTGGTTTGCAATCATCAAAGAGGTGTTGCACGCTCACAAGTTCATTAGGAAGTACAGGATGATCAATTTACATAAGGCCGAGGCGCTTTCTGTTGCGACACTAGGAATTCTCAGATACCGCACGGTGAAGGAGGGATTCCACATACTGCCTGCACATTTCAAGACTACCCTTGCCTTCAATTTGGCAGAGAAATTGCCCAAGGGGGACAAGATACTGGAAGCATTGTATGGTCAGATGAAAGATTATTCCTCAAGGTTCAGAGTAGATGAAGATTCTGTTCAAAGCAGTTCAGATGATCTGACGCTTGCTGATCCTTTCCCACTTTCTGCATATACTTTGGTGAACATGGGTTTGTTGACACTCAAAGAGGAGGACAATCCCGAGGAATGGGATCTCACTGTCCGAGATGTGCAGACGGGAGGAACTAG]

[+] EMBL AK069563             [TAAACGGGCGGCGTGACGGGGACACACTGCCGACGATCGAACGAACGAACGAACGATGCGTCCCTCCTGGTGCTCCGTCGTCGCCACCCCAGATGGGTCTCCTTGAGGACCTCCTCCTCGCCCCGCGCGTCGACGGCGGTGGCGGCGGCGACGGCGAGGCCATGGCGGCGCCCGACTACGCCATCCCTCCCCTCTCCCCAACCGCCGCCTCCGTCGTCCACCGATGCGCCCGGATCGCCGGCGTGGAGGTGGAGCAGCTGCTGCGGCGGTTCGAGCCGGAGAAGGGGGACCAGCCGCTGGCGTACGCCAGGAGCGTCGTGGAGTACTGCTCCTACATTGCCCTGCGCGTCGAGACCAAGCGCCATGACTACCTCAGCGACAGCGAGTTCCACTCGCTCACCTACGACATGATGATCGCCTGGGAAGCCCCCGACGACGAGACGGACGCCGCGTTGCAGAAAATGTCATTTAGCTTCGTTGACGGCAAGGATGACGACGATTGTGGGTCCATGTTCTGTTTGAGCCCCACACAAATGGCCATTCAGGTTGATGGGAGGAGAACGGTCAGTCCTGAAGCATTTGCCAAGATTATTCCTGCGTGTCCTGCAATGGCACACGCGATCACTGTTCGCAACTTATTTGATGCGCTCACAAACTCTACGGGAGGCCGCCTGCATTTTCTCATCTACCATAAGTACCTCAAATGTTTAGACAAGGTGCTGAGATTTGCGAAACGTATATCAGGTGGACACAAAGCTCCAGCTCTTCAACTTTCTGATGGAGAAGTGATCCTTGATATCTATGGTGCCGCGACAACCAAGCCGATTCTTCAACACATTGGGACGTCCACTTGGCCTGGGAGGCTCACACTGACAACCCATGCTTTGTACTTTGAGCCAGTCAGTGTTGATTTCTCATACAACGAGGCTGTGGTGTATGATCTGTCAAGGGACTTGAAGCAGTCTATAAAACGTGAATCAACTGGCCCATGGGGTGCTCAGCTATTTGACAAAGCTGTCATGTACAAATCTAGCTCTACAAGAGAGCCGGTGTTCTTCGAATTTCCTCAATTCAAAGGTCACACTCGTCGAGACTACTGGTTTGCAATCATCAAAGAGGTGTTGCACGCTCACAAGTTCATTAGGAAGTACAGGATGATCAATTTACATAAGGCCGAGGCGCTTTCTGTTGCGACACTAGGAATTCTCAGATACCGCACGGTGAAGGAGGGATTCCACATACTGCCTGCACATTTCAAGACTACCCTTGCCTTCAATTTGGCAGAGAAATTGCCCAAGGGGGACAAGATACTGGAAGCATTGTATGGTCAGATGAAAGATTATTCCTCAAGGTTCAGAGTAGATGAAGATTCTGTTCAAAGCAGTTCAGATGATCTGACGCTTGCTGATCCTTTCCCACTTTCTGCATATACTTTGGTGAACATGGGTTTGTTGACACTCAAAGAGGAGGACAATCCCGAGGAATGGGATCTCACTGTCCGAGATGTGCAGACGGGAGGAACTAG]
[+] EMBL AK069752             [TAAACGGGCGGCGTGACGGGGACACACTGCCGACGATCGAACGAACGAACGAACGATGCGTCCCTCCTGGTGCTCCGTCGTCGCCACCCCAGATGGGTCTCCTTGAGGACCTCCTCCTCGCCCCGCGCGTCGACGGCGGTGGCGGCGGCGACGGCGAGGCCATGGCGGCGCCCGACTACGCCATCCCTCCCCTCTCCCCAACCGCCGCCTCCGTCGTCCACCGATGCGCCCGGATCGCCGGCGTGGAGGTGGAGCAGCTGCTGCGGCGGTTCGAGCCGGAGAAGGGGGACCAGCCGCTGGCGTACGCCAGGAGCGTCGTGGGGTACTGCTCCTACATTGCCCTGCGCGTCGAGACCAAGCGCCATGACTACCTCAGCGACAGCGAGTTCCACTCGCTCACCTACGACATGATGATCGCCTGGGAAGCCCCCGACGACGAGACGGACGCCGCGTTGCAGAAAATGTCATTTAGCTTCGTTGACGGCAAGGATGACGACGATTGTGGGTCCATGTTCTGTTTGAGCCCCACACAAATGGCCATTCAGGTTGATGGGAGGAGAACGGTCAGTCCTGAAGCATTTGCCAAGATTATTCCTGCGTGTCCTGCAATGGCACACGCGATCACTGTTCGCAACTTATTTGATGCGCTCACAAACTCTACGGGAGGCCGCCTGCATTTTCTCATCTACCATAAGTACCTCAAATGTTTAGACAAGGTGCTGAGATTTGCGAAACGTATATCAGGTGGACACAAAGCTCCAGCTCTTCAACTTTCTGATGGAGAAGTGATCCTTGATATCTATGGTGCCGCGACAACCAAGCCGATTCTTCAACACATTGGGACGTCCACTTGGCCTGGGAGGCTCACACTGACAACCCATGCTTTGTACTTTGAGCCAGTCAGTGTTGATTTCTCATACAACGAGGCTGTGGTGTATGATCTGTCAAGGGACTTGAAGCAGTCTATAAAACGTGAATCAACTGGCCCATGGGGTGCTCAGCTATTTGACAAAGCTGT ATGTACAAATCTAGCTCTACAAGAGAGCCGGTGTTCTTCGAATTTCCTCAATTCAAAGGTCACGCTCGTCGAGACTACTGGTTTGCAATCATCAAAGAGGTGTTGCACGCTCACAAGTTCATTAGGAAGTACAGGATGATCAATTTACATAAGGCCGAGGCGCTTTCTGTTGCGACACTAGGAATTCTCAGATACCGCACGGTGAAGGAGGGATTCCACATACTGCCTGCACATTTCAAGACTACCCTTGCCTTCAATTTGGCAGAGAAATTGCACAAGGGGGACAAGATACTGGAAGCATTGTATGGTCAGATGAAAGATTATTCCTCAAGGTTCAGAGTAGATGAAGATTCTGTTCAAAGCAGTTCAGATGATCTGACGCTTGCTGATCCTTTCCCACTTTCTGCATATACTTTGGTGAACATGGGTTTGTTGACACTCAAAGAGGAGGACAATCCCGAGGAATGGGATCTCACTGTCCGAGATGTGCAGACGGGAGGAACTAG]
[+] EMBL C72447               [                CGGGGACACACTGCCGACGATCGAACGAACGAACGAACGATGCGTCCCTCCTGGTGCTCCGTCGTCGCCACCCCAGATGGGTCTCCTTGAGGACCTCCTCCTCGCCCCGCGCGTCGACGGCGGTGGCGGCGGCGACGGCGAGGCCATGGCGGCGCCCGACTACGCCATCCCTCCCCTCTCCCCAACCGCCGCCTCCGTCGTCCACCGATGCGCCCGGATCGCCGGCGTGGAGGTGGAGCAGCTGCTGCGGCGGTTCGAGCCGGAGAAGGGGGACCAGCCGCTGGCGTACGCAAGAAGCGTCGTGGAGTACTGCTCCTACATTGCCCTGCGCGTCGAGAACAAGCG CATGACTAACTCAGCGACAAGAAGTTCCANTCG TCAACTACGACATGATGATCGCTTGGaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]


>consensus_4620#0 TAAACGGGCGGCGTGACGGGGACACACTGCCGACGATCGAACGAACGAACGAACGATGCG TCCCTCCTGGTGCTCCGTCGTCGCCACCCCAGATGGGTCTCCTTGAGGACCTCCTCCTCG CCCCGCGCGTCGACGGCGGTGGCGGCGGCGACGGCGAGGCCATGGCGGCGCCCGACTACG CCATCCCTCCCCTCTCCCCAACCGCCGCCTCCGTCGTCCACCGATGCGCCCGGATCGCCG GCGTGGAGGTGGAGCAGCTGCTGCGGCGGTTCGAGCCGGAGAAGGGGGACCAGCCGCTGG CGTACGCCAGGAGCGTCGTGGAGTACTGCTCCTACATTGCCCTGCGCGTCGAGACCAAGC GCCATGACTACCTCAGCGACAGCGAGTTCCACTCGCTCACCTACGACATGATGATCGCCT GGGAAGCCCCCGACGACGAGACGGACGCCGCGTTGCAGAAAATGTCATTTAGCTTCGTTG ACGGCAAGGATGACGACGATTGTGGGTCCATGTTCTGTTTGAGCCCCACACAAATGGCCA TTCAGGTTGATGGGAGGAGAACGGTCAGTCCTGAAGCATTTGCCAAGATTATTCCTGCGT GTCCTGCAATGGCACACGCGATCACTGTTCGCAACTTATTTGATGCGCTCACAAACTCTA CGGGAGGCCGCCTGCATTTTCTCATCTACCATAAGTACCTCAAATGTTTAGACAAGGTGC TGAGATTTGCGAAACGTATATCAGGTGGACACAAAGCTCCAGCTCTTCAACTTTCTGATG GAGAAGTGATCCTTGATATCTATGGTGCCGCGACAACCAAGCCGATTCTTCAACACATTG GGACGTCCACTTGGCCTGGGAGGCTCACACTGACAACCCATGCTTTGTACTTTGAGCCAG TCAGTGTTGATTTCTCATACAACGAGGCTGTGGTGTATGATCTGTCAAGGGACTTGAAGC AGTCTATAAAACGTGAATCAACTGGCCCATGGGGTGCTCAGCTATTTGACAAAGCTGTCA TGTACAAATCTAGCTCTACAAGAGAGCCGGTGTTCTTCGAATTTCCTCAATTCAAAGGTC ACACTCGTCGAGACTACTGGTTTGCAATCATCAAAGAGGTGTTGCACGCTCACAAGTTCA TTAGGAAGTACAGGATGATCAATTTACATAAGGCCGAGGCGCTTTCTGTTGCGACACTAG GAATTCTCAGATACCGCACGGTGAAGGAGGGATTCCACATACTGCCTGCACATTTCAAGA CTACCCTTGCCTTCAATTTGGCAGAGAAATTGCCCAAGGGGGACAAGATACTGGAAGCAT TGTATGGTCAGATGAAAGATTATTCCTCAAGGTTCAGAGTAGATGAAGATTCTGTTCAAA GCAGTTCAGATGATCTGACGCTTGCTGATCCTTTCCCACTTTCTGCATATACTTTGGTGA ACATGGGTTTGTTGACACTCAAAGAGGAGGACAATCCCGAGGAATGGGATCTCACTGTCC GAGATGTGCAGACGGGAGGAACTAG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)