These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [GACACAAGGAAATTGGAAGCTACTTGTCTAGCCGAGCACCATTGTTCTCTTTTTCTTTTCTTGACCAAAACAATAGGGGAGGCCCCTACGATATAAAAAGATACCATTGTTCTCCCGATAAATTAAATAAGCAACTGAGTGCTTCATTTTGTGAATCGGGTCATGTACATAAAGAACCATACCTTGTTCATAATACTTCAGTCTACAACTGGAGTGTTTTGATGTACAATCTGCTTTGATGTGTTTGAACTTAAATTGGTTATAGTTCGTACAAATATTAAAAAGAAACAACAACGATCTCAACCAATTAGTAGTTTGTTGTCACTACCTTGAAATTCATGATCTCATATACATACAATTAGTAGTTTGTTGTTACTACCTTGAAATTCATGATCACATCTCTATGTCTTAGGTAGTCCTCTGACATTTGAATGTTTCTTTTGGAACTTTCAGACTAGAAGAGCAGAATTCCATGGTTCTGGATTAATTGGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAAGGTTTTACAGGGTTGGTCTTGCCT] [+] EMBL CF304221 [GACACAAGGAAATTGGAAGCTACTTGTCTAGCCGAGCACCATTGTTCTCTTTTTCTTTTCTTGACCAAAACAATAGGGGAGGCCCCTACGATATAAAAAGATACCATTGTTCTCCCGATAAATTAAATAAGCAACTGAGTGCTTCATTTTGTGAATCGGGTCATGTACATAAAGAACCATACCTTGTTCATAATACTTCAGTCTACAACTGGAGTGTTTTGATGTACAATCTGCTTTGATGTGTTTGAACTTAAATTGGTTATAGTTCGTACAAATATTAAAAAGAAACAACAACGATCTCAACCAATTAGTAGTTTGTTGTCACTACCTTGAAATTCATGATCTCATATACATACAATTAGTAGTTTGTTGTTACTACCTTGAAATTCATGATCACATCTCTATGTCTTAGGTAGTCCTCTGACATTTGAATGTTTCTTTTGGAACTTTCAGACTAGAAGAGCAGAATTCCATGGTTCTGGATTAATTGGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAAGGTTTTACAGGGTTGGTCTTGCCT] consensusID : consensus_4622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 535 fasta sequence [TCTCCTCCTCGCGTTCGCTTCTCCCCCCCTCTCCCCCTCCCTCTCCCGCGACGAGGCGGGAGGCATGGAGGCGCGCGCGCGGGGGCGGGAGGCGGGGGAGGGAGGTTGGGGCGGAGGCGGAGGTGGCCTGCCGCTCGCCGTGCGGGAGCTCGTCGCCGGCGGGGTGGCGGGGGGAGTCGCCAAGACGGCCGTCGCGCCGCTCGAGCGCGTCAAGATCCTCTTCCAGACTAGAAGAGCAGAATTCCATGGTTCTGGATTAATTGGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAGGGTTTTACAGGGGAAATGGAGCCAGTGTTGCTCGGATTGTTCCTTATGCAGCTTT-CATTATATGGCCTATGAAG-ATACAAGNCGATNGATCAATCTTGGTTTTCCTAATGTTTAGCAA-GNCCTATT-TTGATCTAGTGGCTGGATCAATAGCTGGTGGAACAGCTGTCATATGCACATACCCTCTTGATCTAGTTCGCACAAAGTTGGCTTATCAGGTTGGTCTTACACCTTGC] [+] EMBL C72272 [TCTCCTCCTCGCGTTCGCTTCTCCCCCCCTCTCCCCCTCCCTCTCCCGCGACGAGGCGGGAGGCATGGAGGCGCGCGCGCGGGGGCGGGAGGCGGGGGAGGGAGGTTGGGGCGGAGGCGGAGGTGGCCTGCCGCTCGCCGTGCGGGAGCTCGTCGCCGGCGGGGTGGCGGGGGGAGTCGCCAAGACGGCCGTCGCGCCGCTCGAGCGCGTCAAGATCCTCTTCCAGACTAGAAGAGCAGAATTCCATGGTTCTGGATTAATTGGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAGGGTTTTACAGGGGAAATGGAGCCAGTGTTGCTCGGATTGTTCCTTATGCAGCTTT CATTATATGGCCTATGAAG ATACAAGNCGATNGATCAATCTTGGTTTTCCTAATGTTTAGCAA GNCCTATT TTGATCTAGT ] [+] EMBL CF306203 [ ACGGCCGTCGCGCCGCTCGAGCGCGTCAAGATCCTCTTCCAGACTAGAAGAGCAGAATTCCATGGTTCTGGATTAATTGGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAGGGTTTTACAGGGGAATTGTTTCCAGTGTTGCTCGGATTGTTCCTTATGCAGCTTTGCATTATATGGCCTATGAAGAATAC AGACGATGGATCATTCTTGGTTTTCCTAATGTTGAGCAAGGCCCTATTCTTGATCTAGTGGCTGGATCAATAGCTGGTGGAACAGCTGTCATATGCACATACCCTCTTGATCTAGTTCGCACAAAGTTGGCTTATCAGGTTGGTCTTACACCTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4622#0 GACACAAGGAAATTGGAAGCTACTTGT-CTAGCCGAGCACCATTGTTCTCTTTTTCTTTT 59 consensus_4622#1 ---------------TCTCCTCCTCGCGTTCGCTTCTCCCCCCCTCTCCCCCTCCCTCTC 45 ** ** * * ** * ** ** * * ** * consensus_4622#0 CTTGACCAAAACAATAGG---GGAGGCCCCTACGATATAAAAAGATACCATTGTTCTCCC 116 consensus_4622#1 CCGCGACGAGGCGGGAGGCATGGAGGCGCGCGCGCGGGGGCGGGAGGCGGGGGAGGGAGG 105 * * * * *** ****** * ** ** * * consensus_4622#0 GATAAATTAAATAAGCAACTGAGTGCTTCATTTTGTGAATCGGGTCAT-GTACATAAAGA 175 consensus_4622#1 TTGGGGCGGAGGCGGAGGTGGCCTGCCGCTCGCCGTGCGGGAGCTCGTCGCCGGCGGGGT 165 * * * *** * *** * ** * * * consensus_4622#0 ACCATACCTTGTTCATAATACTTCAGTC-TACAACTGGAGTGTTTTGATGTACAATCTGC 234 consensus_4622#1 GGCGGGGGGAGTCGCCAAGACGGCCGTCGCGCCGCTCGAGCGCGTCAA-----GATCCTC 220 * ** ** ** * *** * ** *** * * * *** * consensus_4622#0 TTTGATGTGTTTGAACTTAAATTGGTTATAGTTCGTACAAATATTAAAAAGAAACAACAA 294 consensus_4622#1 TTCCAGACTAGAAGAGCAGAATT--CCATGGTTC-TGGATTAATTGGATCATTTCGAACA 277 ** * * **** ** **** * * *** * * * * consensus_4622#0 CGATCTCAACCAATTAGTAGTTTGTTGTCACTACCTTGAAATTCATGATCTCATATACAT 354 consensus_4622#1 ATCTCTCGAACAGAAGGGCTTTTAGGGTT-TTACAGGGGAAATG--GAGCCAGTGTTGCT 334 **** * ** * *** ** *** * ** * ** * * * * consensus_4622#0 ACAATTAGTAGTT-TGTTGTTACTACCTTGAAATTCATGATCACATCTCTATGTCTTAGG 413 consensus_4622#1 CGGATTGTTCCTTATGCAGCTTTCATTATATGGCCTATGAAGATA---CAAGNCGATNGA 391 *** * ** ** * * * * **** * * * * * * consensus_4622#0 TAGTCCTCTGACATTTGAATGTTTCTTTTGGAACTTTCAGACTAGAAGAGCAGAATTCCA 473 consensus_4622#1 TCAATCTTGGTTTTCCTAATGTTTAGCAAGNCCTATTTTGATCTAGTGGCTGGA--TCAA 449 * ** * * ******* * ** ** * ** ** * consensus_4622#0 TGGTTC-TGGATTAATTGGATCATTT-CGAACAATCTCTCGAACAGAAGGGCTTTTAAGG 531 consensus_4622#1 TAGCTGGTGGAACAGCTG--TCATATGCACATACCCTCTTGATCT--AGTTCGCACAAAG 505 * * * **** * ** **** * * * * **** ** * ** * ** * consensus_4622#0 TT---TTACAGGGTTGGTCTTGCCT----- 553 consensus_4622#1 TTGGCTTATCAGGTTGGTCTTACACCTTGC 535 ** *** ********** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||