cluster # 4622

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Oryza sativa
cluster # 4622 cluster # 4622 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4622#0 length = 553 sequences # 1

consensus_4622#1 length = 535 sequences # 2

consensusID : consensus_4622#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence

                              [GACACAAGGAAATTGGAAGCTACTTGTCTAGCCGAGCACCATTGTTCTCTTTTTCTTTTCTTGACCAAAACAATAGGGGAGGCCCCTACGATATAAAAAGATACCATTGTTCTCCCGATAAATTAAATAAGCAACTGAGTGCTTCATTTTGTGAATCGGGTCATGTACATAAAGAACCATACCTTGTTCATAATACTTCAGTCTACAACTGGAGTGTTTTGATGTACAATCTGCTTTGATGTGTTTGAACTTAAATTGGTTATAGTTCGTACAAATATTAAAAAGAAACAACAACGATCTCAACCAATTAGTAGTTTGTTGTCACTACCTTGAAATTCATGATCTCATATACATACAATTAGTAGTTTGTTGTTACTACCTTGAAATTCATGATCACATCTCTATGTCTTAGGTAGTCCTCTGACATTTGAATGTTTCTTTTGGAACTTTCAGACTAGAAGAGCAGAATTCCATGGTTCTGGATTAATTGGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAAGGTTTTACAGGGTTGGTCTTGCCT]

[+] EMBL CF304221             [GACACAAGGAAATTGGAAGCTACTTGTCTAGCCGAGCACCATTGTTCTCTTTTTCTTTTCTTGACCAAAACAATAGGGGAGGCCCCTACGATATAAAAAGATACCATTGTTCTCCCGATAAATTAAATAAGCAACTGAGTGCTTCATTTTGTGAATCGGGTCATGTACATAAAGAACCATACCTTGTTCATAATACTTCAGTCTACAACTGGAGTGTTTTGATGTACAATCTGCTTTGATGTGTTTGAACTTAAATTGGTTATAGTTCGTACAAATATTAAAAAGAAACAACAACGATCTCAACCAATTAGTAGTTTGTTGTCACTACCTTGAAATTCATGATCTCATATACATACAATTAGTAGTTTGTTGTTACTACCTTGAAATTCATGATCACATCTCTATGTCTTAGGTAGTCCTCTGACATTTGAATGTTTCTTTTGGAACTTTCAGACTAGAAGAGCAGAATTCCATGGTTCTGGATTAATTGGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAAGGTTTTACAGGGTTGGTCTTGCCT]




>consensus_4622#0
GACACAAGGAAATTGGAAGCTACTTGTCTAGCCGAGCACCATTGTTCTCTTTTTCTTTTC
TTGACCAAAACAATAGGGGAGGCCCCTACGATATAAAAAGATACCATTGTTCTCCCGATA
AATTAAATAAGCAACTGAGTGCTTCATTTTGTGAATCGGGTCATGTACATAAAGAACCAT
ACCTTGTTCATAATACTTCAGTCTACAACTGGAGTGTTTTGATGTACAATCTGCTTTGAT
GTGTTTGAACTTAAATTGGTTATAGTTCGTACAAATATTAAAAAGAAACAACAACGATCT
CAACCAATTAGTAGTTTGTTGTCACTACCTTGAAATTCATGATCTCATATACATACAATT
AGTAGTTTGTTGTTACTACCTTGAAATTCATGATCACATCTCTATGTCTTAGGTAGTCCT
CTGACATTTGAATGTTTCTTTTGGAACTTTCAGACTAGAAGAGCAGAATTCCATGGTTCT
GGATTAATTGGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAAGGTTTTACAGG
GTTGGTCTTGCCT

consensusID : consensus_4622#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 535
fasta sequence

                              [TCTCCTCCTCGCGTTCGCTTCTCCCCCCCTCTCCCCCTCCCTCTCCCGCGACGAGGCGGGAGGCATGGAGGCGCGCGCGCGGGGGCGGGAGGCGGGGGAGGGAGGTTGGGGCGGAGGCGGAGGTGGCCTGCCGCTCGCCGTGCGGGAGCTCGTCGCCGGCGGGGTGGCGGGGGGAGTCGCCAAGACGGCCGTCGCGCCGCTCGAGCGCGTCAAGATCCTCTTCCAGACTAGAAGAGCAGAATTCCATGGTTCTGGATTAATTGGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAGGGTTTTACAGGGGAAATGGAGCCAGTGTTGCTCGGATTGTTCCTTATGCAGCTTT-CATTATATGGCCTATGAAG-ATACAAGNCGATNGATCAATCTTGGTTTTCCTAATGTTTAGCAA-GNCCTATT-TTGATCTAGTGGCTGGATCAATAGCTGGTGGAACAGCTGTCATATGCACATACCCTCTTGATCTAGTTCGCACAAAGTTGGCTTATCAGGTTGGTCTTACACCTTGC]

[+] EMBL C72272               [TCTCCTCCTCGCGTTCGCTTCTCCCCCCCTCTCCCCCTCCCTCTCCCGCGACGAGGCGGGAGGCATGGAGGCGCGCGCGCGGGGGCGGGAGGCGGGGGAGGGAGGTTGGGGCGGAGGCGGAGGTGGCCTGCCGCTCGCCGTGCGGGAGCTCGTCGCCGGCGGGGTGGCGGGGGGAGTCGCCAAGACGGCCGTCGCGCCGCTCGAGCGCGTCAAGATCCTCTTCCAGACTAGAAGAGCAGAATTCCATGGTTCTGGATTAATTGGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAGGGTTTTACAGGGGAAATGGAGCCAGTGTTGCTCGGATTGTTCCTTATGCAGCTTT CATTATATGGCCTATGAAG ATACAAGNCGATNGATCAATCTTGGTTTTCCTAATGTTTAGCAA GNCCTATT TTGATCTAGT                                                                                                 ]
[+] EMBL CF306203             [                                                                                                                                                                                        ACGGCCGTCGCGCCGCTCGAGCGCGTCAAGATCCTCTTCCAGACTAGAAGAGCAGAATTCCATGGTTCTGGATTAATTGGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAGGGTTTTACAGGGGAATTGTTTCCAGTGTTGCTCGGATTGTTCCTTATGCAGCTTTGCATTATATGGCCTATGAAGAATAC AGACGATGGATCATTCTTGGTTTTCCTAATGTTGAGCAAGGCCCTATTCTTGATCTAGTGGCTGGATCAATAGCTGGTGGAACAGCTGTCATATGCACATACCCTCTTGATCTAGTTCGCACAAAGTTGGCTTATCAGGTTGGTCTTACACCTTGC]




>consensus_4622#1
TCTCCTCCTCGCGTTCGCTTCTCCCCCCCTCTCCCCCTCCCTCTCCCGCGACGAGGCGGG
AGGCATGGAGGCGCGCGCGCGGGGGCGGGAGGCGGGGGAGGGAGGTTGGGGCGGAGGCGG
AGGTGGCCTGCCGCTCGCCGTGCGGGAGCTCGTCGCCGGCGGGGTGGCGGGGGGAGTCGC
CAAGACGGCCGTCGCGCCGCTCGAGCGCGTCAAGATCCTCTTCCAGACTAGAAGAGCAGA
ATTCCATGGTTCTGGATTAATTGGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTT
AGGGTTTTACAGGGGAAATGGAGCCAGTGTTGCTCGGATTGTTCCTTATGCAGCTTTCAT
TATATGGCCTATGAAGATACAAGNCGATNGATCAATCTTGGTTTTCCTAATGTTTAGCAA
GNCCTATTTTGATCTAGTGGCTGGATCAATAGCTGGTGGAACAGCTGTCATATGCACATA
CCCTCTTGATCTAGTTCGCACAAAGTTGGCTTATCAGGTTGGTCTTACACCTTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4622#0      GACACAAGGAAATTGGAAGCTACTTGT-CTAGCCGAGCACCATTGTTCTCTTTTTCTTTT 59
consensus_4622#1      ---------------TCTCCTCCTCGCGTTCGCTTCTCCCCCCCTCTCCCCCTCCCTCTC 45
                                         ** ** *   * **    * **     ** *  *  ** * 

consensus_4622#0      CTTGACCAAAACAATAGG---GGAGGCCCCTACGATATAAAAAGATACCATTGTTCTCCC 116
consensus_4622#1      CCGCGACGAGGCGGGAGGCATGGAGGCGCGCGCGCGGGGGCGGGAGGCGGGGGAGGGAGG 105
                      *     * *  *   ***   ****** *   **         **  *    *       

consensus_4622#0      GATAAATTAAATAAGCAACTGAGTGCTTCATTTTGTGAATCGGGTCAT-GTACATAAAGA 175
consensus_4622#1      TTGGGGCGGAGGCGGAGGTGGCCTGCCGCTCGCCGTGCGGGAGCTCGTCGCCGGCGGGGT 165
                               *    *     *  ***  *     ***     * ** * *        * 

consensus_4622#0      ACCATACCTTGTTCATAATACTTCAGTC-TACAACTGGAGTGTTTTGATGTACAATCTGC 234
consensus_4622#1      GGCGGGGGGAGTCGCCAAGACGGCCGTCGCGCCGCTCGAGCGCGTCAA-----GATCCTC 220
                        *       **    ** **  * ***   *  ** *** *  *  *      ***  *

consensus_4622#0      TTTGATGTGTTTGAACTTAAATTGGTTATAGTTCGTACAAATATTAAAAAGAAACAACAA 294
consensus_4622#1      TTCCAGACTAGAAGAGCAGAATT--CCATGGTTC-TGGATTAATTGGATCATTTCGAACA 277
                      **  *         *    ****    ** **** *  *   ***  *      * *  *

consensus_4622#0      CGATCTCAACCAATTAGTAGTTTGTTGTCACTACCTTGAAATTCATGATCTCATATACAT 354
consensus_4622#1      ATCTCTCGAACAGAAGGGCTTTTAGGGTT-TTACAGGGGAAATG--GAGCCAGTGTTGCT 334
                         **** * **    *   ***   **   ***   * ** *   ** *   * *   *

consensus_4622#0      ACAATTAGTAGTT-TGTTGTTACTACCTTGAAATTCATGATCACATCTCTATGTCTTAGG 413
consensus_4622#1      CGGATTGTTCCTTATGCAGCTTTCATTATATGGCCTATGAAGATA---CAAGNCGATNGA 391
                         ***  *  ** **  * *   *   *       ****  * *   * *     * * 

consensus_4622#0      TAGTCCTCTGACATTTGAATGTTTCTTTTGGAACTTTCAGACTAGAAGAGCAGAATTCCA 473
consensus_4622#1      TCAATCTTGGTTTTCCTAATGTTTAGCAAGNCCTATTTTGATCTAGTGGCTGGA--TCAA 449
                      *    **  *   *   *******     *     **  **      *    **  ** *

consensus_4622#0      TGGTTC-TGGATTAATTGGATCATTT-CGAACAATCTCTCGAACAGAAGGGCTTTTAAGG 531
consensus_4622#1      TAGCTGGTGGAACAGCTG--TCATATGCACATACCCTCTTGATCT--AGTTCGCACAAAG 505
                      * * *  ****  *  **  **** * *  * *  **** ** *   **  *    ** *

consensus_4622#0      TT---TTACAGGGTTGGTCTTGCCT----- 553
consensus_4622#1      TTGGCTTATCAGGTTGGTCTTACACCTTGC 535
                      **   ***   ********** *