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Oryza sativa
cluster # 4628 cluster # 4628       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4628#0 length = 1681 sequences # 2  
consensus_4628#1 length = 352 sequences # 1  

consensusID : consensus_4628#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1681
fasta sequence
                              [TCGGCGATTAGAGCTGCTAGGTGAAGTTGCAAAATTGGCAAGTTCCCTTCATCTTCCTGAAGATGTGAGCTACACATGTGAAACGGCTGCATACTTTTGGTTATTACATGTTTATGCTCGCTGGGAACAATTTTTAGCTGCCTGTGCGCAAAACCAAGACAAGCCCTCATTTGTTAAAGACCGCTTCCCTTTCTCAGAGTTCTTCTCAGATACTCCACAACCTACCTTCACTGGTGAGTCCTTTGAGAAAGATATGCATGCAGCCAAAGGTTGTTTCAAACATCTTTTGACAATATTTCAAGAGCTGGAAGAATGTAGGGCTTTTGAGCTACTTAAGTCAACAGCAGAGAGGGCAAATTATCTAATGACCAAACAAGCCAAGATTGTTGCCATGACTTGTACTCATGCGGCATTGAAGAGGAGAGACTTTCTTCAGTTAGGGTTCAAATACGATAATTTGCTGATGGAAGAAAGTGCACAGATATTAGAGATAGAGACTTTCATACCGATGCTGCTGCAACGGCAGGAAGATGGCTATGCTCGTCTGAAACGTTGCATTTTAATTGGTGATCACCATCAGTTACCCCCTGTCGTGAAGAACATGGCTTTTCAGAAGTACAGCCACATGGACCAAAGTCTCTTTACAAGATTTGTTCGTCTTGGTGTCCCTTACATTGAGCTCAATGCTCAGGGGCGTGCCAGACCTAGCATCGCCGAACTATATAACTGGAGATACAGAGAACTTGGAGATCTACCTTACGTCCGTGAGGAGGCTATCTTCCACAAAGCTAATTCTGGCTTCTCTTATGACTATCAGTTGGTTGATGTTCCTGATTTCCGTGGCAGAGGTGAGTCTGCCCCTTCTCCTTGGTTCTACCAGAATGAAGGGGAGGCTGAGTTTATAGTTAGTGTCTACATCTACATGCGCCTGATTGGATACCCTGCCAATAAGATTTCGATATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAAGCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACAAAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTGATGTCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTCGTTCACTTTTTGAACAGTGCTACGAATTGCAGCCAACATTCCAGCTTCTCCTCCAGAGGCCTGATAAGCTTGGCTTGAATCTTGAAGAGTGCACACCATTTACAGAGCGACCTTTAGAGGAAACTGGAAATATTCATTATGTTGCTGGTATTGAAGATATTGGTCATCTAGTGAATTTCAGATTAGAACATCTTCGTCAGATGCAATACATGCAATATTATGCACCTCATGCAAATGTACCACTTTCAGCAGTACCAGAAAACAATGCTGATGCAACTGAAAATGGCAATGCTGGCAATGGTATGCATAAGGCAAACGATGTCATGGCTGAAGAAAATGGTGATGCAGTGATGAGAAATAAGATGGAGGAAGACACTATTGATACAATGCAGGAAGAAAACAAGATGGATGGTAAAAATCCTGAGGCAAACGACATGGCTATGGAGGAGAAGACCGTCGACGGAGATGATGATCCAAAGAAT]

[+] EMBL AK110991             [TCGGCGATTAGAGCTGCTAGGTGAAGTTGCAAAATTGGCAAGTTCCCTTCATCTTCCTGAAGATGTGAGCTACACATGTGAAACGGCTGCATACTTTTGGTTATTACATGTTTATGCTCGCTGGGAACAATTTTTAGCTGCCTGTGCGCAAAACCAAGACAAGCCCTCATTTGTTAAAGACCGCTTCCCTTTCTCAGAGTTCTTCTCAGATACTCCACAACCTACCTTCACTGGTGAGTCCTTTGAGAAAGATATGCATGCAGCCAAAGGTTGTTTCAAACATCTTTTGACAATATTTCAAGAGCTGGAAGAATGTAGGGCTTTTGAGCTACTTAAGTCAACAGCAGAGAGGGCAAATTATCTAATGACCAAACAAGCCAAGATTGTTGCCATGACTTGTACTCATGCGGCATTGAAGAGGAGAGACTTTCTTCAGTTAGGGTTCAAATACGATAATTTGCTGATGGAAGAAAGTGCACAGATATTAGAGATAGAGACTTTCATACCGATGCTGCTGCAACGGCAGGAAGATGGCTATGCTCGTCTGAAACGTTGCATTTTAATTGGTGATCACCATCAGTTACCCCCTGTCGTGAAGAACATGGCTTTTCAGAAGTACAGCCACATGGACCAAAGTCTCTTTACAAGATTTGTTCGTCTTGGTGTCCCTTACATTGAGCTCAATGCTCAGGGGCGTGCCAGACCTAGCATCGCCGAACTATATAACTGGAGATACAGAGAACTTGGAGATCTACCTTACGTCCGTGAGGAGGCTATCTTCCACAAAGCTAATTCTGGCTTCTCTTATGACTATCAGTTGGTTGATGTTCCTGATTTCCGTGGCAGAGGTGAGTCTGCCCCTTCTCCTTGGTTCTACCAGAATGAAGGGGAGGCTGAGTTTATAGTTAGTGTCTACATCTACATGCGCCTGATTGGATACCCTGCCAATAAGATTTCGATATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAAGCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACAAAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTGATGTCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTCGTTCACTTTTTGAACAGTGCTACGAATTGCAGCCAACATTCCAGCTTCTCCTCCAGAGGCCTGATAAGCTTGGCTTGAATCTTGAAGAGTGCACACCATTTACAGAGCGACCTTTAGAGGAAACTGGAAATATTCATTATGTTGCTGGTATTGAAGATATTGGTCATCTAGTGAATTTCAGATTAGAACATCTTCGTCAGATGCAATACATGCAATATTATGCACCTCATGCAAATGTACCACTTTCAGCAGTACCAGAAAACAATGCTGATGCAACTGAAAATGGCAATGCTGGCAATGGTATGCATAAGGCAAACGATGTCATGGCTGAAGAAAATGGTGATGCAGTGATGAGAAATAAGATGGAGGAAGACACTATTGATACAATGCAGGAAGAAAACAAGATGGATGGTAAAAATCCTGAGGCAAACGACATGGCTATGGAGGAGAAGACCGTCGACGGAGATGATGATCCAAAGAAT]
[+] EMBL C72167               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCCAGACCTAGCATCGNCGAACTATATAACTGGAGATACAGAGAACTTGGAGATCTACCTTACGTCCGTGAGGAGGCTATCTTCCACAAAGCTAATTCTGGCTTCTCTTATGACTATCAGTTGGTTGATGTTCCTGATTTCCGTGGCAGAGGTGAGTCTGCCCCTTCTCCTTGGTTCTACCAGAATGAAGGGGAGGCTGAGTTTATAGTTAGTGTCTACANCTACATGCGCCTGATTGGATACCCTGCCAATAAGATTTCGATATTGACCACTTACANTGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCANGCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACAAAATGATTTCATTTTATTATCTCTTGTCCGGACCCGTTTTGTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]


>consensus_4628#0 TCGGCGATTAGAGCTGCTAGGTGAAGTTGCAAAATTGGCAAGTTCCCTTCATCTTCCTGA AGATGTGAGCTACACATGTGAAACGGCTGCATACTTTTGGTTATTACATGTTTATGCTCG CTGGGAACAATTTTTAGCTGCCTGTGCGCAAAACCAAGACAAGCCCTCATTTGTTAAAGA CCGCTTCCCTTTCTCAGAGTTCTTCTCAGATACTCCACAACCTACCTTCACTGGTGAGTC CTTTGAGAAAGATATGCATGCAGCCAAAGGTTGTTTCAAACATCTTTTGACAATATTTCA AGAGCTGGAAGAATGTAGGGCTTTTGAGCTACTTAAGTCAACAGCAGAGAGGGCAAATTA TCTAATGACCAAACAAGCCAAGATTGTTGCCATGACTTGTACTCATGCGGCATTGAAGAG GAGAGACTTTCTTCAGTTAGGGTTCAAATACGATAATTTGCTGATGGAAGAAAGTGCACA GATATTAGAGATAGAGACTTTCATACCGATGCTGCTGCAACGGCAGGAAGATGGCTATGC TCGTCTGAAACGTTGCATTTTAATTGGTGATCACCATCAGTTACCCCCTGTCGTGAAGAA CATGGCTTTTCAGAAGTACAGCCACATGGACCAAAGTCTCTTTACAAGATTTGTTCGTCT TGGTGTCCCTTACATTGAGCTCAATGCTCAGGGGCGTGCCAGACCTAGCATCGCCGAACT ATATAACTGGAGATACAGAGAACTTGGAGATCTACCTTACGTCCGTGAGGAGGCTATCTT CCACAAAGCTAATTCTGGCTTCTCTTATGACTATCAGTTGGTTGATGTTCCTGATTTCCG TGGCAGAGGTGAGTCTGCCCCTTCTCCTTGGTTCTACCAGAATGAAGGGGAGGCTGAGTT TATAGTTAGTGTCTACATCTACATGCGCCTGATTGGATACCCTGCCAATAAGATTTCGAT ATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAA GCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACA AAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTGATGT CAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTCG TTCACTTTTTGAACAGTGCTACGAATTGCAGCCAACATTCCAGCTTCTCCTCCAGAGGCC TGATAAGCTTGGCTTGAATCTTGAAGAGTGCACACCATTTACAGAGCGACCTTTAGAGGA AACTGGAAATATTCATTATGTTGCTGGTATTGAAGATATTGGTCATCTAGTGAATTTCAG ATTAGAACATCTTCGTCAGATGCAATACATGCAATATTATGCACCTCATGCAAATGTACC ACTTTCAGCAGTACCAGAAAACAATGCTGATGCAACTGAAAATGGCAATGCTGGCAATGG TATGCATAAGGCAAACGATGTCATGGCTGAAGAAAATGGTGATGCAGTGATGAGAAATAA GATGGAGGAAGACACTATTGATACAATGCAGGAAGAAAACAAGATGGATGGTAAAAATCC TGAGGCAAACGACATGGCTATGGAGGAGAAGACCGTCGACGGAGATGATGATCCAAAGAA T



consensusID : consensus_4628#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence
                              [GGTATCCAATCAGGCGCATGTAGATGTAGACACTAACTATATCGAAATCTTATTGGCAGGGTATCCAATCAGGCGCATGTAGATGTAGACACTAACTATAAGATTTCGATATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAAGCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACAAAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTGGATGTCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTCGT]

[+] EMBL OS1304A              [GGTATCCAATCAGGCGCATGTAGATGTAGACACTAACTATATCGAAATCTTATTGGCAGGGTATCCAATCAGGCGCATGTAGATGTAGACACTAACTATAAGATTTCGATATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAAGCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACAAAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTGGATGTCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTCGT]


>consensus_4628#1 GGTATCCAATCAGGCGCATGTAGATGTAGACACTAACTATATCGAAATCTTATTGGCAGG GTATCCAATCAGGCGCATGTAGATGTAGACACTAACTATAAGATTTCGATATTGACCACT TACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAAGCCATGGAAT ATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACAAAATGATTTC ATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTGGATGTCAGAAGACT TATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4628#0      TCGGCGATTAGAGCTGCTAGGTGAAGTTGCAAAATTGGCAAGTTCCCTTCATCTTCCTGA 60
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      AGATGTGAGCTACACATGTGAAACGGCTGCATACTTTTGGTTATTACATGTTTATGCTCG 120
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      CTGGGAACAATTTTTAGCTGCCTGTGCGCAAAACCAAGACAAGCCCTCATTTGTTAAAGA 180
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      CCGCTTCCCTTTCTCAGAGTTCTTCTCAGATACTCCACAACCTACCTTCACTGGTGAGTC 240
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      CTTTGAGAAAGATATGCATGCAGCCAAAGGTTGTTTCAAACATCTTTTGACAATATTTCA 300
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      AGAGCTGGAAGAATGTAGGGCTTTTGAGCTACTTAAGTCAACAGCAGAGAGGGCAAATTA 360
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      TCTAATGACCAAACAAGCCAAGATTGTTGCCATGACTTGTACTCATGCGGCATTGAAGAG 420
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      GAGAGACTTTCTTCAGTTAGGGTTCAAATACGATAATTTGCTGATGGAAGAAAGTGCACA 480
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      GATATTAGAGATAGAGACTTTCATACCGATGCTGCTGCAACGGCAGGAAGATGGCTATGC 540
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      TCGTCTGAAACGTTGCATTTTAATTGGTGATCACCATCAGTTACCCCCTGTCGTGAAGAA 600
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      CATGGCTTTTCAGAAGTACAGCCACATGGACCAAAGTCTCTTTACAAGATTTGTTCGTCT 660
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      TGGTGTCCCTTACATTGAGCTCAATGCTCAGGGGCGTGCCAGACCTAGCATCGCCGAACT 720
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      ATATAACTGGAGATACAGAGAACTTGGAGATCTACCTTACGTCCGTGAGGAGGCTATCTT 780
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      CCACAAAGCTAATTCTGGCTTCTCTTATGACTATCAGTTGGTTGATGTTCCTGATTTCCG 840
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      TGGCAGAGGTGAGTCTGCCCCTTCTCCTTGGTTCTACCAGAATGAAGGGGAGGCTGAGTT 900
consensus_4628#1      ----GGTATCCAATCAGGCGCATGTAGATGTAGACACTA-ACTATATCGAAATCT----- 50
                           *     * ** * * * * *   **     ** * * *  *  * *  **     

consensus_4628#0      TATAGTTAGTGTCTACATCTACATGCGCCTGATTGGATACCCTGCCAATAAGATTTCGAT 960
consensus_4628#1      TATTGGCAGGGTATCCAATCAGGCGCATGTAGATGTAGACACTAACTATAAGATTTCGAT 110
                      *** *  ** ** * **   *   **   *   ** * ** **  * *************

consensus_4628#0      ATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAA 1020
consensus_4628#1      ATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAA 170
                      ************************************************************

consensus_4628#0      GCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACA 1080
consensus_4628#1      GCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACA 230
                      ************************************************************

consensus_4628#0      AAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTG-ATG 1139
consensus_4628#1      AAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTGGATG 290
                      ******************************************************** ***

consensus_4628#0      TCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTC 1199
consensus_4628#1      TCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTC 350
                      ************************************************************

consensus_4628#0      GTTCACTTTTTGAACAGTGCTACGAATTGCAGCCAACATTCCAGCTTCTCCTCCAGAGGC 1259
consensus_4628#1      GT---------------------------------------------------------- 352
                      **                                                          

consensus_4628#0      CTGATAAGCTTGGCTTGAATCTTGAAGAGTGCACACCATTTACAGAGCGACCTTTAGAGG 1319
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      AAACTGGAAATATTCATTATGTTGCTGGTATTGAAGATATTGGTCATCTAGTGAATTTCA 1379
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      GATTAGAACATCTTCGTCAGATGCAATACATGCAATATTATGCACCTCATGCAAATGTAC 1439
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      CACTTTCAGCAGTACCAGAAAACAATGCTGATGCAACTGAAAATGGCAATGCTGGCAATG 1499
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      GTATGCATAAGGCAAACGATGTCATGGCTGAAGAAAATGGTGATGCAGTGATGAGAAATA 1559
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      AGATGGAGGAAGACACTATTGATACAATGCAGGAAGAAAACAAGATGGATGGTAAAAATC 1619
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      CTGAGGCAAACGACATGGCTATGGAGGAGAAGACCGTCGACGGAGATGATGATCCAAAGA 1679
consensus_4628#1      ------------------------------------------------------------
                                                                                  

consensus_4628#0      AT 1681
consensus_4628#1      --
                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)