These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1681 fasta sequence [TCGGCGATTAGAGCTGCTAGGTGAAGTTGCAAAATTGGCAAGTTCCCTTCATCTTCCTGAAGATGTGAGCTACACATGTGAAACGGCTGCATACTTTTGGTTATTACATGTTTATGCTCGCTGGGAACAATTTTTAGCTGCCTGTGCGCAAAACCAAGACAAGCCCTCATTTGTTAAAGACCGCTTCCCTTTCTCAGAGTTCTTCTCAGATACTCCACAACCTACCTTCACTGGTGAGTCCTTTGAGAAAGATATGCATGCAGCCAAAGGTTGTTTCAAACATCTTTTGACAATATTTCAAGAGCTGGAAGAATGTAGGGCTTTTGAGCTACTTAAGTCAACAGCAGAGAGGGCAAATTATCTAATGACCAAACAAGCCAAGATTGTTGCCATGACTTGTACTCATGCGGCATTGAAGAGGAGAGACTTTCTTCAGTTAGGGTTCAAATACGATAATTTGCTGATGGAAGAAAGTGCACAGATATTAGAGATAGAGACTTTCATACCGATGCTGCTGCAACGGCAGGAAGATGGCTATGCTCGTCTGAAACGTTGCATTTTAATTGGTGATCACCATCAGTTACCCCCTGTCGTGAAGAACATGGCTTTTCAGAAGTACAGCCACATGGACCAAAGTCTCTTTACAAGATTTGTTCGTCTTGGTGTCCCTTACATTGAGCTCAATGCTCAGGGGCGTGCCAGACCTAGCATCGCCGAACTATATAACTGGAGATACAGAGAACTTGGAGATCTACCTTACGTCCGTGAGGAGGCTATCTTCCACAAAGCTAATTCTGGCTTCTCTTATGACTATCAGTTGGTTGATGTTCCTGATTTCCGTGGCAGAGGTGAGTCTGCCCCTTCTCCTTGGTTCTACCAGAATGAAGGGGAGGCTGAGTTTATAGTTAGTGTCTACATCTACATGCGCCTGATTGGATACCCTGCCAATAAGATTTCGATATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAAGCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACAAAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTGATGTCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTCGTTCACTTTTTGAACAGTGCTACGAATTGCAGCCAACATTCCAGCTTCTCCTCCAGAGGCCTGATAAGCTTGGCTTGAATCTTGAAGAGTGCACACCATTTACAGAGCGACCTTTAGAGGAAACTGGAAATATTCATTATGTTGCTGGTATTGAAGATATTGGTCATCTAGTGAATTTCAGATTAGAACATCTTCGTCAGATGCAATACATGCAATATTATGCACCTCATGCAAATGTACCACTTTCAGCAGTACCAGAAAACAATGCTGATGCAACTGAAAATGGCAATGCTGGCAATGGTATGCATAAGGCAAACGATGTCATGGCTGAAGAAAATGGTGATGCAGTGATGAGAAATAAGATGGAGGAAGACACTATTGATACAATGCAGGAAGAAAACAAGATGGATGGTAAAAATCCTGAGGCAAACGACATGGCTATGGAGGAGAAGACCGTCGACGGAGATGATGATCCAAAGAAT] [+] EMBL AK110991 [TCGGCGATTAGAGCTGCTAGGTGAAGTTGCAAAATTGGCAAGTTCCCTTCATCTTCCTGAAGATGTGAGCTACACATGTGAAACGGCTGCATACTTTTGGTTATTACATGTTTATGCTCGCTGGGAACAATTTTTAGCTGCCTGTGCGCAAAACCAAGACAAGCCCTCATTTGTTAAAGACCGCTTCCCTTTCTCAGAGTTCTTCTCAGATACTCCACAACCTACCTTCACTGGTGAGTCCTTTGAGAAAGATATGCATGCAGCCAAAGGTTGTTTCAAACATCTTTTGACAATATTTCAAGAGCTGGAAGAATGTAGGGCTTTTGAGCTACTTAAGTCAACAGCAGAGAGGGCAAATTATCTAATGACCAAACAAGCCAAGATTGTTGCCATGACTTGTACTCATGCGGCATTGAAGAGGAGAGACTTTCTTCAGTTAGGGTTCAAATACGATAATTTGCTGATGGAAGAAAGTGCACAGATATTAGAGATAGAGACTTTCATACCGATGCTGCTGCAACGGCAGGAAGATGGCTATGCTCGTCTGAAACGTTGCATTTTAATTGGTGATCACCATCAGTTACCCCCTGTCGTGAAGAACATGGCTTTTCAGAAGTACAGCCACATGGACCAAAGTCTCTTTACAAGATTTGTTCGTCTTGGTGTCCCTTACATTGAGCTCAATGCTCAGGGGCGTGCCAGACCTAGCATCGCCGAACTATATAACTGGAGATACAGAGAACTTGGAGATCTACCTTACGTCCGTGAGGAGGCTATCTTCCACAAAGCTAATTCTGGCTTCTCTTATGACTATCAGTTGGTTGATGTTCCTGATTTCCGTGGCAGAGGTGAGTCTGCCCCTTCTCCTTGGTTCTACCAGAATGAAGGGGAGGCTGAGTTTATAGTTAGTGTCTACATCTACATGCGCCTGATTGGATACCCTGCCAATAAGATTTCGATATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAAGCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACAAAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTGATGTCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTCGTTCACTTTTTGAACAGTGCTACGAATTGCAGCCAACATTCCAGCTTCTCCTCCAGAGGCCTGATAAGCTTGGCTTGAATCTTGAAGAGTGCACACCATTTACAGAGCGACCTTTAGAGGAAACTGGAAATATTCATTATGTTGCTGGTATTGAAGATATTGGTCATCTAGTGAATTTCAGATTAGAACATCTTCGTCAGATGCAATACATGCAATATTATGCACCTCATGCAAATGTACCACTTTCAGCAGTACCAGAAAACAATGCTGATGCAACTGAAAATGGCAATGCTGGCAATGGTATGCATAAGGCAAACGATGTCATGGCTGAAGAAAATGGTGATGCAGTGATGAGAAATAAGATGGAGGAAGACACTATTGATACAATGCAGGAAGAAAACAAGATGGATGGTAAAAATCCTGAGGCAAACGACATGGCTATGGAGGAGAAGACCGTCGACGGAGATGATGATCCAAAGAAT] [+] EMBL C72167 [ GCCAGACCTAGCATCGNCGAACTATATAACTGGAGATACAGAGAACTTGGAGATCTACCTTACGTCCGTGAGGAGGCTATCTTCCACAAAGCTAATTCTGGCTTCTCTTATGACTATCAGTTGGTTGATGTTCCTGATTTCCGTGGCAGAGGTGAGTCTGCCCCTTCTCCTTGGTTCTACCAGAATGAAGGGGAGGCTGAGTTTATAGTTAGTGTCTACANCTACATGCGCCTGATTGGATACCCTGCCAATAAGATTTCGATATTGACCACTTACANTGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCANGCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACAAAATGATTTCATTTTATTATCTCTTGTCCGGACCCGTTTTGTGGG ] consensusID : consensus_4628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [GGTATCCAATCAGGCGCATGTAGATGTAGACACTAACTATATCGAAATCTTATTGGCAGGGTATCCAATCAGGCGCATGTAGATGTAGACACTAACTATAAGATTTCGATATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAAGCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACAAAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTGGATGTCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTCGT] [+] EMBL OS1304A [GGTATCCAATCAGGCGCATGTAGATGTAGACACTAACTATATCGAAATCTTATTGGCAGGGTATCCAATCAGGCGCATGTAGATGTAGACACTAACTATAAGATTTCGATATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAAGCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACAAAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTGGATGTCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4628#0 TCGGCGATTAGAGCTGCTAGGTGAAGTTGCAAAATTGGCAAGTTCCCTTCATCTTCCTGA 60 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 AGATGTGAGCTACACATGTGAAACGGCTGCATACTTTTGGTTATTACATGTTTATGCTCG 120 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 CTGGGAACAATTTTTAGCTGCCTGTGCGCAAAACCAAGACAAGCCCTCATTTGTTAAAGA 180 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 CCGCTTCCCTTTCTCAGAGTTCTTCTCAGATACTCCACAACCTACCTTCACTGGTGAGTC 240 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 CTTTGAGAAAGATATGCATGCAGCCAAAGGTTGTTTCAAACATCTTTTGACAATATTTCA 300 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 AGAGCTGGAAGAATGTAGGGCTTTTGAGCTACTTAAGTCAACAGCAGAGAGGGCAAATTA 360 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 TCTAATGACCAAACAAGCCAAGATTGTTGCCATGACTTGTACTCATGCGGCATTGAAGAG 420 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 GAGAGACTTTCTTCAGTTAGGGTTCAAATACGATAATTTGCTGATGGAAGAAAGTGCACA 480 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 GATATTAGAGATAGAGACTTTCATACCGATGCTGCTGCAACGGCAGGAAGATGGCTATGC 540 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 TCGTCTGAAACGTTGCATTTTAATTGGTGATCACCATCAGTTACCCCCTGTCGTGAAGAA 600 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 CATGGCTTTTCAGAAGTACAGCCACATGGACCAAAGTCTCTTTACAAGATTTGTTCGTCT 660 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 TGGTGTCCCTTACATTGAGCTCAATGCTCAGGGGCGTGCCAGACCTAGCATCGCCGAACT 720 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 ATATAACTGGAGATACAGAGAACTTGGAGATCTACCTTACGTCCGTGAGGAGGCTATCTT 780 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 CCACAAAGCTAATTCTGGCTTCTCTTATGACTATCAGTTGGTTGATGTTCCTGATTTCCG 840 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 TGGCAGAGGTGAGTCTGCCCCTTCTCCTTGGTTCTACCAGAATGAAGGGGAGGCTGAGTT 900 consensus_4628#1 ----GGTATCCAATCAGGCGCATGTAGATGTAGACACTA-ACTATATCGAAATCT----- 50 * * ** * * * * * ** ** * * * * * * ** consensus_4628#0 TATAGTTAGTGTCTACATCTACATGCGCCTGATTGGATACCCTGCCAATAAGATTTCGAT 960 consensus_4628#1 TATTGGCAGGGTATCCAATCAGGCGCATGTAGATGTAGACACTAACTATAAGATTTCGAT 110 *** * ** ** * ** * ** * ** * ** ** * ************* consensus_4628#0 ATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAA 1020 consensus_4628#1 ATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAA 170 ************************************************************ consensus_4628#0 GCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACA 1080 consensus_4628#1 GCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACA 230 ************************************************************ consensus_4628#0 AAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTG-ATG 1139 consensus_4628#1 AAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTGGATG 290 ******************************************************** *** consensus_4628#0 TCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTC 1199 consensus_4628#1 TCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTC 350 ************************************************************ consensus_4628#0 GTTCACTTTTTGAACAGTGCTACGAATTGCAGCCAACATTCCAGCTTCTCCTCCAGAGGC 1259 consensus_4628#1 GT---------------------------------------------------------- 352 ** consensus_4628#0 CTGATAAGCTTGGCTTGAATCTTGAAGAGTGCACACCATTTACAGAGCGACCTTTAGAGG 1319 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 AAACTGGAAATATTCATTATGTTGCTGGTATTGAAGATATTGGTCATCTAGTGAATTTCA 1379 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 GATTAGAACATCTTCGTCAGATGCAATACATGCAATATTATGCACCTCATGCAAATGTAC 1439 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 CACTTTCAGCAGTACCAGAAAACAATGCTGATGCAACTGAAAATGGCAATGCTGGCAATG 1499 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 GTATGCATAAGGCAAACGATGTCATGGCTGAAGAAAATGGTGATGCAGTGATGAGAAATA 1559 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 AGATGGAGGAAGACACTATTGATACAATGCAGGAAGAAAACAAGATGGATGGTAAAAATC 1619 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 CTGAGGCAAACGACATGGCTATGGAGGAGAAGACCGTCGACGGAGATGATGATCCAAAGA 1679 consensus_4628#1 ------------------------------------------------------------ consensus_4628#0 AT 1681 consensus_4628#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||