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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1681 fasta sequence
[TCGGCGATTAGAGCTGCTAGGTGAAGTTGCAAAATTGGCAAGTTCCCTTCATCTTCCTGAAGATGTGAGCTACACATGTGAAACGGCTGCATACTTTTGGTTATTACATGTTTATGCTCGCTGGGAACAATTTTTAGCTGCCTGTGCGCAAAACCAAGACAAGCCCTCATTTGTTAAAGACCGCTTCCCTTTCTCAGAGTTCTTCTCAGATACTCCACAACCTACCTTCACTGGTGAGTCCTTTGAGAAAGATATGCATGCAGCCAAAGGTTGTTTCAAACATCTTTTGACAATATTTCAAGAGCTGGAAGAATGTAGGGCTTTTGAGCTACTTAAGTCAACAGCAGAGAGGGCAAATTATCTAATGACCAAACAAGCCAAGATTGTTGCCATGACTTGTACTCATGCGGCATTGAAGAGGAGAGACTTTCTTCAGTTAGGGTTCAAATACGATAATTTGCTGATGGAAGAAAGTGCACAGATATTAGAGATAGAGACTTTCATACCGATGCTGCTGCAACGGCAGGAAGATGGCTATGCTCGTCTGAAACGTTGCATTTTAATTGGTGATCACCATCAGTTACCCCCTGTCGTGAAGAACATGGCTTTTCAGAAGTACAGCCACATGGACCAAAGTCTCTTTACAAGATTTGTTCGTCTTGGTGTCCCTTACATTGAGCTCAATGCTCAGGGGCGTGCCAGACCTAGCATCGCCGAACTATATAACTGGAGATACAGAGAACTTGGAGATCTACCTTACGTCCGTGAGGAGGCTATCTTCCACAAAGCTAATTCTGGCTTCTCTTATGACTATCAGTTGGTTGATGTTCCTGATTTCCGTGGCAGAGGTGAGTCTGCCCCTTCTCCTTGGTTCTACCAGAATGAAGGGGAGGCTGAGTTTATAGTTAGTGTCTACATCTACATGCGCCTGATTGGATACCCTGCCAATAAGATTTCGATATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAAGCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACAAAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTGATGTCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTCGTTCACTTTTTGAACAGTGCTACGAATTGCAGCCAACATTCCAGCTTCTCCTCCAGAGGCCTGATAAGCTTGGCTTGAATCTTGAAGAGTGCACACCATTTACAGAGCGACCTTTAGAGGAAACTGGAAATATTCATTATGTTGCTGGTATTGAAGATATTGGTCATCTAGTGAATTTCAGATTAGAACATCTTCGTCAGATGCAATACATGCAATATTATGCACCTCATGCAAATGTACCACTTTCAGCAGTACCAGAAAACAATGCTGATGCAACTGAAAATGGCAATGCTGGCAATGGTATGCATAAGGCAAACGATGTCATGGCTGAAGAAAATGGTGATGCAGTGATGAGAAATAAGATGGAGGAAGACACTATTGATACAATGCAGGAAGAAAACAAGATGGATGGTAAAAATCCTGAGGCAAACGACATGGCTATGGAGGAGAAGACCGTCGACGGAGATGATGATCCAAAGAAT]
[+] EMBL AK110991 [TCGGCGATTAGAGCTGCTAGGTGAAGTTGCAAAATTGGCAAGTTCCCTTCATCTTCCTGAAGATGTGAGCTACACATGTGAAACGGCTGCATACTTTTGGTTATTACATGTTTATGCTCGCTGGGAACAATTTTTAGCTGCCTGTGCGCAAAACCAAGACAAGCCCTCATTTGTTAAAGACCGCTTCCCTTTCTCAGAGTTCTTCTCAGATACTCCACAACCTACCTTCACTGGTGAGTCCTTTGAGAAAGATATGCATGCAGCCAAAGGTTGTTTCAAACATCTTTTGACAATATTTCAAGAGCTGGAAGAATGTAGGGCTTTTGAGCTACTTAAGTCAACAGCAGAGAGGGCAAATTATCTAATGACCAAACAAGCCAAGATTGTTGCCATGACTTGTACTCATGCGGCATTGAAGAGGAGAGACTTTCTTCAGTTAGGGTTCAAATACGATAATTTGCTGATGGAAGAAAGTGCACAGATATTAGAGATAGAGACTTTCATACCGATGCTGCTGCAACGGCAGGAAGATGGCTATGCTCGTCTGAAACGTTGCATTTTAATTGGTGATCACCATCAGTTACCCCCTGTCGTGAAGAACATGGCTTTTCAGAAGTACAGCCACATGGACCAAAGTCTCTTTACAAGATTTGTTCGTCTTGGTGTCCCTTACATTGAGCTCAATGCTCAGGGGCGTGCCAGACCTAGCATCGCCGAACTATATAACTGGAGATACAGAGAACTTGGAGATCTACCTTACGTCCGTGAGGAGGCTATCTTCCACAAAGCTAATTCTGGCTTCTCTTATGACTATCAGTTGGTTGATGTTCCTGATTTCCGTGGCAGAGGTGAGTCTGCCCCTTCTCCTTGGTTCTACCAGAATGAAGGGGAGGCTGAGTTTATAGTTAGTGTCTACATCTACATGCGCCTGATTGGATACCCTGCCAATAAGATTTCGATATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAAGCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACAAAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTGATGTCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTCGTTCACTTTTTGAACAGTGCTACGAATTGCAGCCAACATTCCAGCTTCTCCTCCAGAGGCCTGATAAGCTTGGCTTGAATCTTGAAGAGTGCACACCATTTACAGAGCGACCTTTAGAGGAAACTGGAAATATTCATTATGTTGCTGGTATTGAAGATATTGGTCATCTAGTGAATTTCAGATTAGAACATCTTCGTCAGATGCAATACATGCAATATTATGCACCTCATGCAAATGTACCACTTTCAGCAGTACCAGAAAACAATGCTGATGCAACTGAAAATGGCAATGCTGGCAATGGTATGCATAAGGCAAACGATGTCATGGCTGAAGAAAATGGTGATGCAGTGATGAGAAATAAGATGGAGGAAGACACTATTGATACAATGCAGGAAGAAAACAAGATGGATGGTAAAAATCCTGAGGCAAACGACATGGCTATGGAGGAGAAGACCGTCGACGGAGATGATGATCCAAAGAAT]
[+] EMBL C72167 [ GCCAGACCTAGCATCGNCGAACTATATAACTGGAGATACAGAGAACTTGGAGATCTACCTTACGTCCGTGAGGAGGCTATCTTCCACAAAGCTAATTCTGGCTTCTCTTATGACTATCAGTTGGTTGATGTTCCTGATTTCCGTGGCAGAGGTGAGTCTGCCCCTTCTCCTTGGTTCTACCAGAATGAAGGGGAGGCTGAGTTTATAGTTAGTGTCTACANCTACATGCGCCTGATTGGATACCCTGCCAATAAGATTTCGATATTGACCACTTACANTGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCANGCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACAAAATGATTTCATTTTATTATCTCTTGTCCGGACCCGTTTTGTGGG ]
consensusID : consensus_4628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence
[GGTATCCAATCAGGCGCATGTAGATGTAGACACTAACTATATCGAAATCTTATTGGCAGGGTATCCAATCAGGCGCATGTAGATGTAGACACTAACTATAAGATTTCGATATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAAGCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACAAAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTGGATGTCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTCGT]
[+] EMBL OS1304A [GGTATCCAATCAGGCGCATGTAGATGTAGACACTAACTATATCGAAATCTTATTGGCAGGGTATCCAATCAGGCGCATGTAGATGTAGACACTAACTATAAGATTTCGATATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAAGCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACAAAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTGGATGTCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4628#0 TCGGCGATTAGAGCTGCTAGGTGAAGTTGCAAAATTGGCAAGTTCCCTTCATCTTCCTGA 60
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 AGATGTGAGCTACACATGTGAAACGGCTGCATACTTTTGGTTATTACATGTTTATGCTCG 120
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 CTGGGAACAATTTTTAGCTGCCTGTGCGCAAAACCAAGACAAGCCCTCATTTGTTAAAGA 180
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 CCGCTTCCCTTTCTCAGAGTTCTTCTCAGATACTCCACAACCTACCTTCACTGGTGAGTC 240
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 CTTTGAGAAAGATATGCATGCAGCCAAAGGTTGTTTCAAACATCTTTTGACAATATTTCA 300
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 AGAGCTGGAAGAATGTAGGGCTTTTGAGCTACTTAAGTCAACAGCAGAGAGGGCAAATTA 360
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 TCTAATGACCAAACAAGCCAAGATTGTTGCCATGACTTGTACTCATGCGGCATTGAAGAG 420
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 GAGAGACTTTCTTCAGTTAGGGTTCAAATACGATAATTTGCTGATGGAAGAAAGTGCACA 480
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 GATATTAGAGATAGAGACTTTCATACCGATGCTGCTGCAACGGCAGGAAGATGGCTATGC 540
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 TCGTCTGAAACGTTGCATTTTAATTGGTGATCACCATCAGTTACCCCCTGTCGTGAAGAA 600
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 CATGGCTTTTCAGAAGTACAGCCACATGGACCAAAGTCTCTTTACAAGATTTGTTCGTCT 660
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 TGGTGTCCCTTACATTGAGCTCAATGCTCAGGGGCGTGCCAGACCTAGCATCGCCGAACT 720
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 ATATAACTGGAGATACAGAGAACTTGGAGATCTACCTTACGTCCGTGAGGAGGCTATCTT 780
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 CCACAAAGCTAATTCTGGCTTCTCTTATGACTATCAGTTGGTTGATGTTCCTGATTTCCG 840
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 TGGCAGAGGTGAGTCTGCCCCTTCTCCTTGGTTCTACCAGAATGAAGGGGAGGCTGAGTT 900
consensus_4628#1 ----GGTATCCAATCAGGCGCATGTAGATGTAGACACTA-ACTATATCGAAATCT----- 50
* * ** * * * * * ** ** * * * * * * **
consensus_4628#0 TATAGTTAGTGTCTACATCTACATGCGCCTGATTGGATACCCTGCCAATAAGATTTCGAT 960
consensus_4628#1 TATTGGCAGGGTATCCAATCAGGCGCATGTAGATGTAGACACTAACTATAAGATTTCGAT 110
*** * ** ** * ** * ** * ** * ** ** * *************
consensus_4628#0 ATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAA 1020
consensus_4628#1 ATTGACCACTTACAATGGTCAGAAGCTTCTTATTCGCGATGTTATTAACAGAAGATGCAA 170
************************************************************
consensus_4628#0 GCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACA 1080
consensus_4628#1 GCCATGGAATATCGAACCACCTAGCAAGGTTACCACAGTGGACAAGTTCCAGGGTCAACA 230
************************************************************
consensus_4628#0 AAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTG-ATG 1139
consensus_4628#1 AAATGATTTCATTTTATTATCTCTTGTCCGCACCCGTTTTGTGGGGCATCTTCGTGGATG 290
******************************************************** ***
consensus_4628#0 TCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTC 1199
consensus_4628#1 TCAGAAGACTTATTGTGGCAATGTCCCGTGCTCGTCTGGGCCTGTATGTGTTCTGCCGTC 350
************************************************************
consensus_4628#0 GTTCACTTTTTGAACAGTGCTACGAATTGCAGCCAACATTCCAGCTTCTCCTCCAGAGGC 1259
consensus_4628#1 GT---------------------------------------------------------- 352
**
consensus_4628#0 CTGATAAGCTTGGCTTGAATCTTGAAGAGTGCACACCATTTACAGAGCGACCTTTAGAGG 1319
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 AAACTGGAAATATTCATTATGTTGCTGGTATTGAAGATATTGGTCATCTAGTGAATTTCA 1379
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 GATTAGAACATCTTCGTCAGATGCAATACATGCAATATTATGCACCTCATGCAAATGTAC 1439
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 CACTTTCAGCAGTACCAGAAAACAATGCTGATGCAACTGAAAATGGCAATGCTGGCAATG 1499
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 GTATGCATAAGGCAAACGATGTCATGGCTGAAGAAAATGGTGATGCAGTGATGAGAAATA 1559
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 AGATGGAGGAAGACACTATTGATACAATGCAGGAAGAAAACAAGATGGATGGTAAAAATC 1619
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 CTGAGGCAAACGACATGGCTATGGAGGAGAAGACCGTCGACGGAGATGATGATCCAAAGA 1679
consensus_4628#1 ------------------------------------------------------------
consensus_4628#0 AT 1681
consensus_4628#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||