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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2084 fasta sequence
[CTCATCCTCACGCGCGGAAACTGTTTGTACTCGAGCCCACTCCAACTCCACTCCACTACGCCGATCGTGTCACACGCACGCGCGCATGGCGGCGGTCGCGCTGCTCTCGCCAGCGGCGGCTGCGGCGGTGGTGACAGAGGGTGAGGAGAAGCCGCCGCTGGAGGAGGTGGAGGTGGAGGTGGAGGTGGTGGTGCGGGCGATCGTGGCCGACGGCGACGGGAGGGAGGCGAATGCGGCGGCGCCGGGGGCGAATTGGTGCGGGGAGGAGGAGGTGCCGGCGCATGCAGCGGAGGGGGGCACGGTCGCCGCGATGGTGGACGAGAATGCGGCGGCGCCTGCAGCGGAGGGGGACACGGTGGCCGCGGCGAAGGGGGAGGCGCCTGCAGCGGAGGGGGACATGGTGGTCGCCGCGAAGGGGGCGGCGCATGCAGCGGCGGAGGGGGACACGGTGGCGGCGGCGGCGGTAGCGGGCGAGAACGAGGCGGCGCATGCACCAGCAGCGGGGGGGAACACGGTGGCCGCGGCTGCGGATGTCAAGGGCGAGTGCTTCAAGCGATTCCGGTGGCCGACGAGGCGGCGGCCGTGGCGGAGGGGGTTAACGCGATCGCCGCGGCGGAGCGGGAGGAGGACGACGAGGGGGTGAAGTGGCTGAAGCACTACTCCTCCCTCCAGAGCATACTCACCGTCGGGGACGGGGACTTCTCCTTCTCGCTGGCGCTCGCCACCGCGTTCGGCTCCGGCGACAACCTCGTCGCCACCTCGCTGGACACCATTGAGGACCTGAGGGGCAAATACAGCAAAGCAGAATCAAATATAATGGAGCTGAAAAGGATGGGGGCCACTGTTTTGCATGGCATCGATGCAAAAAGGATGAAGGATCACACCAACCTGAAGCTGAGACGGTTTGATCGAATTATCTTCAATTTTCCTCATGCTGGATTCAAAGGAAAAGAGGATGATTTGCATATGATCAATTTGCACAGGGAGTTGGTATGGGGTTTTTTTCAGAATGCAAGACACCTGCTTCGACCCTATGGTGAAATTCATGTTAGCCACAAGATAGGATTGCCATATGACAGGTGGTGTATCGAGCATCTAGCATATGAGTCTTCTCTTACAATGATTGCTAAAGTTGATTTCAGAAAAGAGGACTACCCAGGTTACAACCAAAAGAGAGGAGACAGTGCAAAGTGTGATCAACCTTTTGAACTAGGTGCTTGCTGCACTTTCATGTTCATGAGAGATTTGACGAGGCTGAAAAGGGCACGTCGGAACAGGATCAATGCATCTTCACTGGGAATCCAAGCCCAACATGACATGCCATTTCACCCACGTCCGCTTGTTCCAGCATATCCTCAGCCACATTTCCCTTCACAAGTCAATGCAGCTCACAGGCAAGTTCCTCCAGAGCATTACCCCCTCGGAATTGCTCATGGGCAAGAGCCAGGTTTTCTAGATAACTTTGGTGGCATAGAGAGGTATCCTTACCAGCGTGGCGCTATCGGGACAGTGATCGGCATGCCAGGCACTCCTTCACCAATGCGCGGAATAACCAGAAGTAGCTTCCCTGCACCTCAGGAGCAGCCTTGGCGTCAAGAGAGATATATTATGGATCCAGAAGTAAGAGATGATCACTACCATTTTGCCCGGGAATACCCGAGGAATCTGCAGGAGTATGAAATGGAGAGGCAGGTGATGCCAGGAGGAACCAGGTTGAGGTACGTCGATTTCCTGGAAAATCGTTACGAGGAATCTGTTCGGAGGCAGGAGCACCTGCGAAGGCTGATTGCAGAGTATGGTGGATACGACTGATGGTCTTCAGTGTATGGGTGTATCTTTTATCTGCTTGTAGAACAGATGAACTCGCCCTTTCAAGATGTGATATGCTCGGTCTGATATGGGTATTGAAAGATGCTTTTGGGTTGAAGCTGTACAGGTAGAGTCATTTTGTGTGGCAAATTATCGTCTAGCCACAAAAACATAGCAGCATAAGGAAATGCTCTTTAGTGTAAGAAATCCTATACTTTCAGGCAATAGTTGCTACCTGCAACAAGCCAACAACTATCTTCATATATGCACAGCGT]
[+] EMBL AK109596 [CTCATCCTCACGCGCGGAAACTGTTTGTACTCGAGCCCACTCCAACTCCACTCCACTACGCCGATCGTGTCACACGCACGCGCGCATGGCGGCGGTCGCGCTGCTCTCGCCAGCGGCGGCTGCGGCGGTGGTGACAGAGGGTGAGGAGAAGCCGCCGCTGGAGGAGGTGGAGGTGGAGGTGGAGGTGGTGGTGCGGGCGATCGTGGCCGACGGCGACGGGAGGGAGGCGAATGCGGCGGCGCCGGGGGCGAATTGGTGCGGGGAGGAGGAGGTGCCGGCGCATGCAGCGGAGGGGGGCACGGTCGCCGCGATGGTGGACGAGAATGCGGCGGCGCCTGCAGCGGAGGGGGACACGGTGGCCGCGGCGAAGGGGGAGGCGCCTGCAGCGGAGGGGGACATGGTGGTCGCCGCGAAGGGGGCGGCGCATGCAGCGGCGGAGGGGGACACGGTGGCGGCGGCGGCGGTAGCGGGCGAGAACGAGGCGGCGCATGCACCAGCAGCGGGGGGGAACACGGTGGCCGCGGCTGCGGATGTCAAGGGCGAGTGCTTCAAGCGATTCCGGTGGCCGACGAGGCGGCGGCCGTGGCGGAGGGGGTTAACGCGATCGCCGCGGCGGAGCGGGAGGAGGACGACGAGGGGGTGAAGTGGCTGAAGCACTACTCCTCCCTCCAGAGCATACTCACCGTCGGGGACGGGGACTTCTCCTTCTCGCTGGCGCTCGCCACCGCGTTCGGCTCCGGCGACAACCTCGTCGCCACCTCGCTGGACACCATTGAGGACCTGAGGGGCAAATACAGCAAAGCAGAATCAAATATAATGGAGCTGAAAAGGATGGGGGCCACTGTTTTGCATGGCATCGATGCAAAAAGGATGAAGGATCACACCAACCTGAAGCTGAGACGGTTTGATCGAATTATCTTCAATTTTCCTCATGCTGGATTCAAAGGAAAAGAGGATGATTTGCATATGATCAATTTGCACAGGGAGTTGGTATGGGGTTTTTTTCAGAATGCAAGACACCTGCTTCGACCCTATGGTGAAATTCATGTTAGCCACAAGATAGGATTGCCATATGACAGGTGGTGTATCGAGCATCTAGCATATGAGTCTTCTCTTACAATGATTGCTAAAGTTGATTTCAGAAAAGAGGACTACCCAGGTTACAACCAAAAGAGAGGAGACAGTGCAAAGTGTGATCAACCTTTTGAACTAGGTGCTTGCTGCACTTTCATGTTCATGAGAGATTTGACGAGGCTGAAAAGGGCACGTCGGAACAGGATCAATGCATCTTCACTGGGAATCCAAGCCCAACATGACATGCCATTTCACCCACGTCCGCTTGTTCCAGCATATCCTCAGCCACATTTCCCTTCACAAGTCAATGCAGCTCACAGGCAAGTTCCTCCAGAGCATTACCCCCTCGGAATTGCTCATGGGCAAGAGCCAGGTTTTCTAGATAACTTTGGTGGCATAGAGAGGTATCCTTACCAGCGTGGCGCTATCGGGACAGTGATCGGCATGCCAGGCACTCCTTCACCAATGCGCGGAATAACCAGAAGTAGCTTCCCTGCACCTCAGGAGCAGCCTTGGCGTCAAGAGAGATATATTATGGATCCAGAAGTAAGAGATGATCACTACCATTTTGCCCGGGAATACCCGAGGAATCTGCAGGAGTATGAAATGGAGAGGCAGGTGATGCCAGGAGGAACCAGGTTGAGGTACGTCGATTTCCTGGAAAATCGTTACGAGGAATCTGTTCGGAGGCAGGAGCACCTGCGAAGGCTGATTGCAGAGTATGGTGGATACGACTGATGGTCTTCAGTGTATGGGTGTATCTTTTATCTGCTTGTAGAACAGATGAACTCGCCCTTTCAAGATGTGATATGCTCGGTCTGATATGGGTATTGAAAGATGCTTTTGGGTTGAAGCTGTACAGGTAGAGTCATTTTGTGTGGCAAATTATCGTCTAGCCACAAAAACATAGCAGCATAAGGAAATGCTCTTTAGTGTAAGAAATCCTATACTTTCAGGCAATAGTTGCTACCTGCAACAAGCCAACAACTATCTTCATATATGCACAGCGT]
[+] EMBL CF328131 [ GCATCTAGCATATGAGTCTTCTCTTACAATGATTGCTAAAGTTGATTTCAGAAAAGAGGACTACCCAGGTTACAACCAAAAGAGAGGAGACAGTGCAAAGTGTGATCAACCTTTTGAACTAGGTGCTTGCTGCACTTTCATGTTCATGAGAGATTTGACGAGGCTGAAAAGGGCACGTCGGAACAGGATCAATGCATCTTCACTGGGAATCCAAGCCCAACATGACATGCCATTTCACCCACGTCCGCTTGTTCCAGCATATCCTCAGCCACATTTCCCTTCACAAGTCAATGCAGCTCACAGGCAAGTTCCTCCAGAGCATTACCCCCTCGGAATTGCTCATGGGCAAGAGCCAGGTTTTCTAGATAACTTTGGTGGCATAGAGAGGTATCCTTACCAGCGTGGCGCTATCGGGACAGTGATCGGCATGCCAGGCACTCCTTCACCAATGCGCGGAATAACCAGAAGTAGCTTCCCTGCACCTCAGGAGCAGCCTTGGCGTCAAGAGAGATATATTATGGATCCAGAAGTAAGAGATGATCACTACCATTTTGCCCGGGAATACCCGAGGAATCTGCAGGAGTATGAAATGGAGAGGCAGGTGATGCCAGGAGGAACCAGGTTGAGGTACGTCGATTTCCTGG ]
consensusID : consensus_4637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence
[TTTCAAGATGTGATATGCTCGGTCTGATATGGGTATTGAAAGATGCTTTTGGGTTGAAGCTGTACAGGTAGAGTCATCTTGTGTGGCAAATTATCGTCTAGCCACAAAAACATAGCAGCATAAGGAAATGCTCTTTAGTGTAAGAAATCCTATACTTTCAGGCAATAGTTGCTACCTGCAACAAGCCAACAACTATCTTCATAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF327321 [TTTCAAGATGTGATATGCTCGGTCTGATATGGGTATTGAAAGATGCTTTTGGGTTGAAGCTGTACAGGTAGAGTCATCTTGTGTGGCAAATTATCGTCTAGCCACAAAAACATAGCAGCATAAGGAAATGCTCTTTAGTGTAAGAAATCCTATACTTTCAGGCAATAGTTGCTACCTGCAACAAGCCAACAACTATCTTCATAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4637#0 CTCATCCTCACGCGCGGAAACTGTTTGTACTCGAGCCCACTCCAACTCCACTCCACTACG 60
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 CCGATCGTGTCACACGCACGCGCGCATGGCGGCGGTCGCGCTGCTCTCGCCAGCGGCGGC 120
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 TGCGGCGGTGGTGACAGAGGGTGAGGAGAAGCCGCCGCTGGAGGAGGTGGAGGTGGAGGT 180
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 GGAGGTGGTGGTGCGGGCGATCGTGGCCGACGGCGACGGGAGGGAGGCGAATGCGGCGGC 240
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 GCCGGGGGCGAATTGGTGCGGGGAGGAGGAGGTGCCGGCGCATGCAGCGGAGGGGGGCAC 300
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 GGTCGCCGCGATGGTGGACGAGAATGCGGCGGCGCCTGCAGCGGAGGGGGACACGGTGGC 360
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 CGCGGCGAAGGGGGAGGCGCCTGCAGCGGAGGGGGACATGGTGGTCGCCGCGAAGGGGGC 420
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 GGCGCATGCAGCGGCGGAGGGGGACACGGTGGCGGCGGCGGCGGTAGCGGGCGAGAACGA 480
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 GGCGGCGCATGCACCAGCAGCGGGGGGGAACACGGTGGCCGCGGCTGCGGATGTCAAGGG 540
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 CGAGTGCTTCAAGCGATTCCGGTGGCCGACGAGGCGGCGGCCGTGGCGGAGGGGGTTAAC 600
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 GCGATCGCCGCGGCGGAGCGGGAGGAGGACGACGAGGGGGTGAAGTGGCTGAAGCACTAC 660
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 TCCTCCCTCCAGAGCATACTCACCGTCGGGGACGGGGACTTCTCCTTCTCGCTGGCGCTC 720
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 GCCACCGCGTTCGGCTCCGGCGACAACCTCGTCGCCACCTCGCTGGACACCATTGAGGAC 780
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 CTGAGGGGCAAATACAGCAAAGCAGAATCAAATATAATGGAGCTGAAAAGGATGGGGGCC 840
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 ACTGTTTTGCATGGCATCGATGCAAAAAGGATGAAGGATCACACCAACCTGAAGCTGAGA 900
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 CGGTTTGATCGAATTATCTTCAATTTTCCTCATGCTGGATTCAAAGGAAAAGAGGATGAT 960
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 TTGCATATGATCAATTTGCACAGGGAGTTGGTATGGGGTTTTTTTCAGAATGCAAGACAC 1020
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 CTGCTTCGACCCTATGGTGAAATTCATGTTAGCCACAAGATAGGATTGCCATATGACAGG 1080
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 TGGTGTATCGAGCATCTAGCATATGAGTCTTCTCTTACAATGATTGCTAAAGTTGATTTC 1140
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 AGAAAAGAGGACTACCCAGGTTACAACCAAAAGAGAGGAGACAGTGCAAAGTGTGATCAA 1200
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 CCTTTTGAACTAGGTGCTTGCTGCACTTTCATGTTCATGAGAGATTTGACGAGGCTGAAA 1260
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 AGGGCACGTCGGAACAGGATCAATGCATCTTCACTGGGAATCCAAGCCCAACATGACATG 1320
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 CCATTTCACCCACGTCCGCTTGTTCCAGCATATCCTCAGCCACATTTCCCTTCACAAGTC 1380
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 AATGCAGCTCACAGGCAAGTTCCTCCAGAGCATTACCCCCTCGGAATTGCTCATGGGCAA 1440
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 GAGCCAGGTTTTCTAGATAACTTTGGTGGCATAGAGAGGTATCCTTACCAGCGTGGCGCT 1500
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 ATCGGGACAGTGATCGGCATGCCAGGCACTCCTTCACCAATGCGCGGAATAACCAGAAGT 1560
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 AGCTTCCCTGCACCTCAGGAGCAGCCTTGGCGTCAAGAGAGATATATTATGGATCCAGAA 1620
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 GTAAGAGATGATCACTACCATTTTGCCCGGGAATACCCGAGGAATCTGCAGGAGTATGAA 1680
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 ATGGAGAGGCAGGTGATGCCAGGAGGAACCAGGTTGAGGTACGTCGATTTCCTGGAAAAT 1740
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 CGTTACGAGGAATCTGTTCGGAGGCAGGAGCACCTGCGAAGGCTGATTGCAGAGTATGGT 1800
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 GGATACGACTGATGGTCTTCAGTGTATGGGTGTATCTTTTATCTGCTTGTAGAACAGATG 1860
consensus_4637#1 ------------------------------------------------------------
consensus_4637#0 AACTCGCCCTTTCAAGATGTGATATGCTCGGTCTGATATGGGTATTGAAAGATGCTTTTG 1920
consensus_4637#1 ---------TTTCAAGATGTGATATGCTCGGTCTGATATGGGTATTGAAAGATGCTTTTG 51
***************************************************
consensus_4637#0 GGTTGAAGCTGTACAGGTAGAGTCATTTTGTGTGGCAAATTATCGTCTAGCCACAAAAAC 1980
consensus_4637#1 GGTTGAAGCTGTACAGGTAGAGTCATCTTGTGTGGCAAATTATCGTCTAGCCACAAAAAC 111
************************** *********************************
consensus_4637#0 ATAGCAGCATAAGGAAATGCTCTTTAGTGTAAGAAATCCTATACTTTCAGGCAATAGTTG 2040
consensus_4637#1 ATAGCAGCATAAGGAAATGCTCTTTAGTGTAAGAAATCCTATACTTTCAGGCAATAGTTG 171
************************************************************
consensus_4637#0 CTACCTGCAACAAGCCAACAACTATCTTCATATATGCACAGCGT---------- 2084
consensus_4637#1 CTACCTGCAACAAGCCAACAACTATCTTCATAAAAAAAAAAAAAAAAAAAAAAA 225
******************************** * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||