cluster # 4639

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Oryza sativa
cluster # 4639 cluster # 4639 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4639#0 length = 335 sequences # 2

consensus_4639#1 length = 272 sequences # 1

consensusID : consensus_4639#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 335
fasta sequence

                              [AGAGTGAGACGTGACTGTTGACGTTTTTTTTTTATCAACGCAAGATCACCGGACGATTTACGGTGCAATCAATTACACCGCAAAACAGTGACATGGAGCTCAACAAGGCGGTGGCCGTGGCGGCGGCGGCGATGGTCGCCGTGGTGGCAATGGTGGCGGCGCCGGCGTCGGGGCAGGCGGTGGCGGCGTCGTGCACGGCGTCGCTGATCACCAGCTTCACGCCGTGCTTCAACTTCATCACCAGCAGCAGCGGCGGCGGCGGCGGCAACGGCACGGCCGCCGGCGGCGGCGCGCCGACGGCGGAGTGCTGCCAGTCGGTGGCGGCGATGATCAAC]

[+] EMBL AU197898             [AGAGTGAGACGTGACTGTTGACGTTTTTTTTTTATCAACGCAAGATCACCGGACGATTTACGGTGCAATCAATTACACCGCAAAACAGTGACATGGAGCTCAACAAGGCGGTGGCCGTGGCGGCGGCGGCGATGGTCGCCGTGGTGGCAATGGTGGCGGCGCCGGCGTCGGGGCAGGCGGTGGCGGCGTCGTGCACGGCGTCGCTGATCACCAGCTTCACGCCGTGCTTCAACTTCATCACCAGCAGCAGCGGCGGCGGCGGCGGCAACGGCACGGCCGCCGGCGGCGGCGCGCCGACGGCGGAGTGCTGCCAGTCGGTGGCGGCGATGATCAAC]
[+] EMBL C27553               [           TGACTGTTGACGTTTTTTTTTTATCAACGCAAGATCACCGGACGATTTACGGTGCAATCAATTANACCGCAAAACAGTGACATGGAGCTCAACAAGGCGGTGGCCGTGGCGGCGTCGGCGATGGTCG CGTGGTGGC                                                                                                                                                                                           ]




>consensus_4639#0
AGAGTGAGACGTGACTGTTGACGTTTTTTTTTTATCAACGCAAGATCACCGGACGATTTA
CGGTGCAATCAATTACACCGCAAAACAGTGACATGGAGCTCAACAAGGCGGTGGCCGTGG
CGGCGGCGGCGATGGTCGCCGTGGTGGCAATGGTGGCGGCGCCGGCGTCGGGGCAGGCGG
TGGCGGCGTCGTGCACGGCGTCGCTGATCACCAGCTTCACGCCGTGCTTCAACTTCATCA
CCAGCAGCAGCGGCGGCGGCGGCGGCAACGGCACGGCCGCCGGCGGCGGCGCGCCGACGG
CGGAGTGCTGCCAGTCGGTGGCGGCGATGATCAAC

consensusID : consensus_4639#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [TGNATGNTGNATGACTGTGGACTTGTTGACGTTTTTTTTTTATCAACGCAAGATCACCGGACGATTTACGGTGCAATCAATTACACCGCAAAACAGTGACATGGAGCTCAACAAGGCGGTGGCTTGGCGNGGCGGCGATGGTCGCCGNGNTGGCAATNGTNGCGGCCGGCGTCGGGGCANGCGGTNGCGGCGTCGTGCACNGCGTCNTGATCACCAGCTTCACNACGTCTTCAACTTCATCACCAGCAGCACGCCGCGGCNGCGGCAAACGG]

[+] EMBL C27561               [TGNATGNTGNATGACTGTGGACTTGTTGACGTTTTTTTTTTATCAACGCAAGATCACCGGACGATTTACGGTGCAATCAATTACACCGCAAAACAGTGACATGGAGCTCAACAAGGCGGTGGCTTGGCGNGGCGGCGATGGTCGCCGNGNTGGCAATNGTNGCGGCCGGCGTCGGGGCANGCGGTNGCGGCGTCGTGCACNGCGTCNTGATCACCAGCTTCACNACGTCTTCAACTTCATCACCAGCAGCACGCCGCGGCNGCGGCAAACGG]




>consensus_4639#1
TGNATGNTGNATGACTGTGGACTTGTTGACGTTTTTTTTTTATCAACGCAAGATCACCGG
ACGATTTACGGTGCAATCAATTACACCGCAAAACAGTGACATGGAGCTCAACAAGGCGGT
GGCTTGGCGNGGCGGCGATGGTCGCCGNGNTGGCAATNGTNGCGGCCGGCGTCGGGGCAN
GCGGTNGCGGCGTCGTGCACNGCGTCNTGATCACCAGCTTCACNACGTCTTCAACTTCAT
CACCAGCAGCACGCCGCGGCNGCGGCAAACGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4639#0      AGAGTGAGACGTGACTGT--------TGACGTTTTTTTTTTATCAACGCAAGATCACCGG 52
consensus_4639#1      TGNATGNTGNATGACTGTGGACTTGTTGACGTTTTTTTTTTATCAACGCAAGATCACCGG 60
                       *  **     *******        **********************************

consensus_4639#0      ACGATTTACGGTGCAATCAATTACACCGCAAAACAGTGACATGGAGCTCAACAAGGCGGT 112
consensus_4639#1      ACGATTTACGGTGCAATCAATTACACCGCAAAACAGTGACATGGAGCTCAACAAGGCGGT 120
                      ************************************************************

consensus_4639#0      GGCCGTGGCGGCGGCGGCGATGGTCGCCGTGGTGGCAATGGTGGCGGCGCCGGCGTCGGG 172
consensus_4639#1      GGCT-TGGCGN-GGCGGCGATGGTCGCCGNGNTGGCAATNGTNGCGG--CCGGCGTCGGG 176
                      ***  *****  ***************** * ******* ** ****  ***********

consensus_4639#0      GCAGGCGGTGGCGGCGTCGTGCACGGCGTCGCTGATCACCAGCTTCACGCCGTGCTTCAA 232
consensus_4639#1      GCANGCGGTNGCGGCGTCGTGCACNGCGTCN-TGATCACCAGCTTCACNACGT-CTTCAA 234
                      *** ***** ************** *****  ****************  *** ******

consensus_4639#0      CTTCATCACCAGCAGCA-GCGGCGGCGGCGGCGGCAACGGCACGGCCGCCGGCGGCGGCG 291
consensus_4639#1      CTTCATCACCAGCAGCACGCCGCGGCNGCGGCA--AACGG-------------------- 272
                      ***************** ** ***** *****   *****                    

consensus_4639#0      CGCCGACGGCGGAGTGCTGCCAGTCGGTGGCGGCGATGATCAAC 335
consensus_4639#1      --------------------------------------------