These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1827 fasta sequence [GCCTCCGCACTGCATTCCTTCCAGTTCGTTTCGTTGCCGTTCGCTCAGCGCTCGCTTCCACGGTTCCCCCACCCACCACGCGCATTCGCATTCGCATTCGCAGCAGCTGAGACTTGGGATATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCTCCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGGGCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCTTCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGAGAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTTAATGTAAAACGAGATTACAGGGAGATCCTACAAACCCAAGATACCCATCATGCTGTATGGACTTTGGATAAGACAATAGCAAAACTGGAGACAGAACTTTCCGCTGCGAGAACTCTGCAGGAATCATTTCTCAATGGTTCTCCGGTTTCAGAAGGGCATAAGGGTTCGGACTCTACAGGAAGGCAGAAATATCTTATGGTGATAGGCATTAATACTGCTTTTAGCAGTCGACAGAGAAGGGATTCTATCCGTAACACATGGATGCCTCAAGGAATAAAGAGAAGAAAACTAGAAGAAGAGAAGGGGATCGTAATCCGTTTTGTTATTGGTCACAGTGCTATTTCAGGTGGCATTGTGGAGAGAGCAATCAAGGCAGAGGAAAGAAAACATGGAGATTTCATGAGAATAGACCATGTTGAAGGATACCTTGAATTGTCTGGCAAAACCAAGACATACTTTGCTACAGCTGTTTCTTTATGGGATGCTGACTTCTATGTGAAGGTTGACGATGATGTGCATGTTAATATAGCAACACTCGGACAGATTTTATCGAATCATGTTAAGAAGCCCAGAGTATATATTGGATGCATGAAGTCCGGTCCCGTCTTATCTGACAAAGATGTGAGGTACTATGAACCTGAGCATTGGAAATTTGGTGACCAGTATTTCCGGCATGCAACTGGTCAATTGTATGCTATTTCAAAAGATTTGGCAACTTACATATCAATAAACAAACGTGTTTTGCATAAGTACATCAATGAGGATGTGTCTTTGGGAGCCTGGTTCATAGGATTAGATGTTGAGCATATTGATGAGCGCCGACTTTGTTGTGGTACTCCACCTGATTGCGAATGGAAAGCTCAGGCAGGGAATACATGCGCAGTGTCATTTGATTGGAAATGCAGTGGCATATGTGACTCTGTGGAGAACATGCAGTGGGTGCACAATAGATGTGGAGAAAGCGAGAAATCTCTCTGGATTTCTTCTTTCTAAGCAGGGCCACCGGAAGATCTGACATGACTAGCTGAATGCTACATTGTATAACAGATCAGAACATGTTGTACATTGTGCAGAAAATGTATTAGATTCATCTTGTAGCAATAGTAGCTAAGCTAGGCTCAATTTTGTGATTGGGGCTCACCATACACCGATACACCAACTATGCAGACCGTGGTTTCACTGAGACTGCCGGTGACGGTTGAGGGTACATAGGCTGATCTACTTTTTCTCATGTTTTAGGTTGCCATTTTTGTTGTAACTTGTAAGGATCTAATGTATTCTGTGCATTGTTACCAAGATATATACATATATGCAGAGCCTTTTCACTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACTTACCGTAT] [+] EMBL AK063283 [GCCTCCGCACTGCATTCCTTCCAGTTCGTTTCGTTGCCGTTCGCTCAGCGCTCGCTTCCACGGTTCCCCCACCCACCACGCGCATTCGCATTCGCATTCGCAGCAGCTGAGACTTGGGATATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCTCCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGGGCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCTTCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGAGAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTTAATGTAAAACGAGATTACAGGGAGATCCTACAAACCCAAGATACCCATCATGCTGTATGGACTTTGGATAAGACAATAGCAAAACTGGAGACAGAACTTTCCGCTGCGAGAACTCTGCAGGAATCATTTCTCAATGGTTCTCCGGTTTCAGAAGGGCATAAGGGTTCGGACTCTACAGGAAGGCAGAAATATCTTATGGTGATAGGCATTAATACTGCTTTTAGCAGTCGACAGAGAAGGGATTCTATCCGTAACACATGGATGCCTCAAGGAATAAAGAGAAGAAAACTAGAAGAAGAGAAGGGGATCGTAATCCGTTTTGTTATTGGTCACAGTGCTATTTCAGGTGGCATTGTGGAGAGAGCAATCAAGGCAGAGGAAAGAAAACATGGAGATTTCATGAGAATAGACCATGTTGAAGGATACCTTGAATTGTCTGGCAAAACCAAGACATACTTTGCTACAGCTGTTTCTTTATGGGATGCTGACTTCTATGTGAAGGTTGACGATGATGTGCATGTTAATATAGCAACACTCGGACAGATTTTATCGAATCATGTTAAGAAGCCCAGAGTATATATTGGATGCATGAAGTCCGGTCCCGTCTTATCTGACAAAGATGTGAGGTACTATGAACCTGAGCATTGGAAATTTGGTGACCAGTATTTCCGGCATGCAACTGGTCAATTGTATGCTATTTCAAAAGATTTGGCAACTTACATATCAATAAACAAACGTGTTTTGCATAAGTACATCAATGAGGATGTGTCTTTGGGAGCCTGGTTCATAGGATTAGATGTTGAGCATATTGATGAGCGCCGACTTTGTTGTGGTACTCCACCTGATTGCGAATGGAAAGCTCAGGCAGGGAATACATGCGCAGTGTCATTTGATTGGAAATGCAGTGGCATATGTGACTCTGTGGAGAACATGCAGTGGGTGCACAATAGATGTGGAGAAAGCGAGAAATCTCTCTGGATTTCTTCTTTCTAAGCAGGGCCACCGGAAGATCTGACATGACTAGCTGAATGCTACATTGTATAACAGATCAGAACATGTTGTACATTGTGCAGAAAATGTATTAGATTCATCTTGTAGCAATAGTAGCTAAGCTAGGCTCAATTTTGTGATTGGGGCTCACCATACACCGATACACCAACTATGCAGACCGTGGTTTCACTGAGACTGCCGGTGACGGTTGAGGGTACATAGGCTGATCTACTTTTTCTCATGTTTTAGGTTGCCATTTTTGTTGTAACTTGTAAGGATCTAATGTATTCTGTGCATTGTTACCAAGATATATACATATATGCAGAGCCTT ] [+] EMBL CF327425 [ CACCGATACACCAACTATGCAGACCGTGGTTTCACTGAGACTGCCGGTGACGGTTAAGGGTACATAGGCTGATCTACTTTTTCTCATGTTTTAGGTTGCCATTTTTGTTGTAACTTGTAAGGATCTAATGTATTCTGTGCATTGTTACCAAGATATATACATATATGCAGAGCCTTTTCACTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACTTACCGTAT] consensusID : consensus_4642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [TTCGCAGCAGCTGAGACTTGGGATATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCTCCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGGGCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCTTCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGAGAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTGTACCATTCCCCAACCACAAGTAATTCCTGACAGTATTTGCATATGTCACATAGCGAAGAACGAATTGCATATTATCTCTTTAATTAGAATACTCTTTATTTTTTTTTCTTGAAAACGCAAGAGAATTGCATTTCATTTCA] [+] EMBL AK108015 [TTCGCAGCAGCTGAGACTTGGGATATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCTCCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGGGCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCTTCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGAGAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTGTACCATTCCCCAACCACAAGTAATTCCTGACAGTATTTGCATATGTCACATAGCGAAGAACGAATTGCATATTATCTCTTTAATTAGAATACTCTTTATTTTTTTTTCTTGAAAACGCAAGAGAATTGCATTTCATTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4642#0 GCCTCCGCACTGCATTCCTTCCAGTTCGTTTCGTTGCCGTTCGCTCAGCGCTCGCTTCCA 60 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 CGGTTCCCCCACCCACCACGCGCATTCGCATTCGCATTCGCAGCAGCTGAGACTTGGGAT 120 consensus_4642#1 ------------------------------------TTCGCAGCAGCTGAGACTTGGGAT 24 ************************ consensus_4642#0 ATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCT 180 consensus_4642#1 ATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCT 84 ************************************************************ consensus_4642#0 CCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGG 240 consensus_4642#1 CCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGG 144 ************************************************************ consensus_4642#0 GCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCT 300 consensus_4642#1 GCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCT 204 ************************************************************ consensus_4642#0 TCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGA 360 consensus_4642#1 TCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGA 264 ************************************************************ consensus_4642#0 GAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTTAATGTAAAAC 420 consensus_4642#1 GAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTGTACC------ 318 ************************************************* * consensus_4642#0 GAGATTACAGGGAGATCCTACAAACCCAAGATACCCATCATGCTGTATGGACTTTGGATA 480 consensus_4642#1 --------------ATTCCCCAACCACAAGTAATTCCTGACAGTATTTGCATATGTCACA 364 ** * *** * **** * * * * * * ** * * * * consensus_4642#0 AGACAATAGCAAAACTGGAGACAGAACTTTCCGCTGCGAGAACTCTGCAGGAATCATTTC 540 consensus_4642#1 TAGCGAAGAACGAATTGCATATT-ATCTCTTTAATTAGAATACTCT-------TTATTTT 416 * * ** ** * * * ** * * ** ***** * **** consensus_4642#0 TCAATGGTTCTCCGGTTTCAGAAGGGCATAAGGGTTCGGACTCTACAGGAAGGCAGAAAT 600 consensus_4642#1 TT-----TTTCTTGAAAACGCAAGAGAATTGCATTTC--ATTTCA--------------- 454 * ** * * *** * ** *** * * * consensus_4642#0 ATCTTATGGTGATAGGCATTAATACTGCTTTTAGCAGTCGACAGAGAAGGGATTCTATCC 660 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 GTAACACATGGATGCCTCAAGGAATAAAGAGAAGAAAACTAGAAGAAGAGAAGGGGATCG 720 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 TAATCCGTTTTGTTATTGGTCACAGTGCTATTTCAGGTGGCATTGTGGAGAGAGCAATCA 780 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 AGGCAGAGGAAAGAAAACATGGAGATTTCATGAGAATAGACCATGTTGAAGGATACCTTG 840 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 AATTGTCTGGCAAAACCAAGACATACTTTGCTACAGCTGTTTCTTTATGGGATGCTGACT 900 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 TCTATGTGAAGGTTGACGATGATGTGCATGTTAATATAGCAACACTCGGACAGATTTTAT 960 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 CGAATCATGTTAAGAAGCCCAGAGTATATATTGGATGCATGAAGTCCGGTCCCGTCTTAT 1020 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 CTGACAAAGATGTGAGGTACTATGAACCTGAGCATTGGAAATTTGGTGACCAGTATTTCC 1080 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 GGCATGCAACTGGTCAATTGTATGCTATTTCAAAAGATTTGGCAACTTACATATCAATAA 1140 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 ACAAACGTGTTTTGCATAAGTACATCAATGAGGATGTGTCTTTGGGAGCCTGGTTCATAG 1200 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 GATTAGATGTTGAGCATATTGATGAGCGCCGACTTTGTTGTGGTACTCCACCTGATTGCG 1260 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 AATGGAAAGCTCAGGCAGGGAATACATGCGCAGTGTCATTTGATTGGAAATGCAGTGGCA 1320 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 TATGTGACTCTGTGGAGAACATGCAGTGGGTGCACAATAGATGTGGAGAAAGCGAGAAAT 1380 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 CTCTCTGGATTTCTTCTTTCTAAGCAGGGCCACCGGAAGATCTGACATGACTAGCTGAAT 1440 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 GCTACATTGTATAACAGATCAGAACATGTTGTACATTGTGCAGAAAATGTATTAGATTCA 1500 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 TCTTGTAGCAATAGTAGCTAAGCTAGGCTCAATTTTGTGATTGGGGCTCACCATACACCG 1560 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 ATACACCAACTATGCAGACCGTGGTTTCACTGAGACTGCCGGTGACGGTTGAGGGTACAT 1620 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 AGGCTGATCTACTTTTTCTCATGTTTTAGGTTGCCATTTTTGTTGTAACTTGTAAGGATC 1680 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 TAATGTATTCTGTGCATTGTTACCAAGATATATACATATATGCAGAGCCTTTTCACTCTT 1740 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1800 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 CCCCTGTCATGCCGTTACTTACCGTAT 1827 consensus_4642#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||