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Oryza sativa
cluster # 4642 cluster # 4642       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4642#0 length = 1827 sequences # 2  
consensus_4642#1 length = 454 sequences # 1  

consensusID : consensus_4642#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1827
fasta sequence
                              [GCCTCCGCACTGCATTCCTTCCAGTTCGTTTCGTTGCCGTTCGCTCAGCGCTCGCTTCCACGGTTCCCCCACCCACCACGCGCATTCGCATTCGCATTCGCAGCAGCTGAGACTTGGGATATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCTCCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGGGCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCTTCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGAGAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTTAATGTAAAACGAGATTACAGGGAGATCCTACAAACCCAAGATACCCATCATGCTGTATGGACTTTGGATAAGACAATAGCAAAACTGGAGACAGAACTTTCCGCTGCGAGAACTCTGCAGGAATCATTTCTCAATGGTTCTCCGGTTTCAGAAGGGCATAAGGGTTCGGACTCTACAGGAAGGCAGAAATATCTTATGGTGATAGGCATTAATACTGCTTTTAGCAGTCGACAGAGAAGGGATTCTATCCGTAACACATGGATGCCTCAAGGAATAAAGAGAAGAAAACTAGAAGAAGAGAAGGGGATCGTAATCCGTTTTGTTATTGGTCACAGTGCTATTTCAGGTGGCATTGTGGAGAGAGCAATCAAGGCAGAGGAAAGAAAACATGGAGATTTCATGAGAATAGACCATGTTGAAGGATACCTTGAATTGTCTGGCAAAACCAAGACATACTTTGCTACAGCTGTTTCTTTATGGGATGCTGACTTCTATGTGAAGGTTGACGATGATGTGCATGTTAATATAGCAACACTCGGACAGATTTTATCGAATCATGTTAAGAAGCCCAGAGTATATATTGGATGCATGAAGTCCGGTCCCGTCTTATCTGACAAAGATGTGAGGTACTATGAACCTGAGCATTGGAAATTTGGTGACCAGTATTTCCGGCATGCAACTGGTCAATTGTATGCTATTTCAAAAGATTTGGCAACTTACATATCAATAAACAAACGTGTTTTGCATAAGTACATCAATGAGGATGTGTCTTTGGGAGCCTGGTTCATAGGATTAGATGTTGAGCATATTGATGAGCGCCGACTTTGTTGTGGTACTCCACCTGATTGCGAATGGAAAGCTCAGGCAGGGAATACATGCGCAGTGTCATTTGATTGGAAATGCAGTGGCATATGTGACTCTGTGGAGAACATGCAGTGGGTGCACAATAGATGTGGAGAAAGCGAGAAATCTCTCTGGATTTCTTCTTTCTAAGCAGGGCCACCGGAAGATCTGACATGACTAGCTGAATGCTACATTGTATAACAGATCAGAACATGTTGTACATTGTGCAGAAAATGTATTAGATTCATCTTGTAGCAATAGTAGCTAAGCTAGGCTCAATTTTGTGATTGGGGCTCACCATACACCGATACACCAACTATGCAGACCGTGGTTTCACTGAGACTGCCGGTGACGGTTGAGGGTACATAGGCTGATCTACTTTTTCTCATGTTTTAGGTTGCCATTTTTGTTGTAACTTGTAAGGATCTAATGTATTCTGTGCATTGTTACCAAGATATATACATATATGCAGAGCCTTTTCACTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACTTACCGTAT]

[+] EMBL AK063283             [GCCTCCGCACTGCATTCCTTCCAGTTCGTTTCGTTGCCGTTCGCTCAGCGCTCGCTTCCACGGTTCCCCCACCCACCACGCGCATTCGCATTCGCATTCGCAGCAGCTGAGACTTGGGATATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCTCCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGGGCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCTTCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGAGAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTTAATGTAAAACGAGATTACAGGGAGATCCTACAAACCCAAGATACCCATCATGCTGTATGGACTTTGGATAAGACAATAGCAAAACTGGAGACAGAACTTTCCGCTGCGAGAACTCTGCAGGAATCATTTCTCAATGGTTCTCCGGTTTCAGAAGGGCATAAGGGTTCGGACTCTACAGGAAGGCAGAAATATCTTATGGTGATAGGCATTAATACTGCTTTTAGCAGTCGACAGAGAAGGGATTCTATCCGTAACACATGGATGCCTCAAGGAATAAAGAGAAGAAAACTAGAAGAAGAGAAGGGGATCGTAATCCGTTTTGTTATTGGTCACAGTGCTATTTCAGGTGGCATTGTGGAGAGAGCAATCAAGGCAGAGGAAAGAAAACATGGAGATTTCATGAGAATAGACCATGTTGAAGGATACCTTGAATTGTCTGGCAAAACCAAGACATACTTTGCTACAGCTGTTTCTTTATGGGATGCTGACTTCTATGTGAAGGTTGACGATGATGTGCATGTTAATATAGCAACACTCGGACAGATTTTATCGAATCATGTTAAGAAGCCCAGAGTATATATTGGATGCATGAAGTCCGGTCCCGTCTTATCTGACAAAGATGTGAGGTACTATGAACCTGAGCATTGGAAATTTGGTGACCAGTATTTCCGGCATGCAACTGGTCAATTGTATGCTATTTCAAAAGATTTGGCAACTTACATATCAATAAACAAACGTGTTTTGCATAAGTACATCAATGAGGATGTGTCTTTGGGAGCCTGGTTCATAGGATTAGATGTTGAGCATATTGATGAGCGCCGACTTTGTTGTGGTACTCCACCTGATTGCGAATGGAAAGCTCAGGCAGGGAATACATGCGCAGTGTCATTTGATTGGAAATGCAGTGGCATATGTGACTCTGTGGAGAACATGCAGTGGGTGCACAATAGATGTGGAGAAAGCGAGAAATCTCTCTGGATTTCTTCTTTCTAAGCAGGGCCACCGGAAGATCTGACATGACTAGCTGAATGCTACATTGTATAACAGATCAGAACATGTTGTACATTGTGCAGAAAATGTATTAGATTCATCTTGTAGCAATAGTAGCTAAGCTAGGCTCAATTTTGTGATTGGGGCTCACCATACACCGATACACCAACTATGCAGACCGTGGTTTCACTGAGACTGCCGGTGACGGTTGAGGGTACATAGGCTGATCTACTTTTTCTCATGTTTTAGGTTGCCATTTTTGTTGTAACTTGTAAGGATCTAATGTATTCTGTGCATTGTTACCAAGATATATACATATATGCAGAGCCTT                                                                                                ]
[+] EMBL CF327425             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CACCGATACACCAACTATGCAGACCGTGGTTTCACTGAGACTGCCGGTGACGGTTAAGGGTACATAGGCTGATCTACTTTTTCTCATGTTTTAGGTTGCCATTTTTGTTGTAACTTGTAAGGATCTAATGTATTCTGTGCATTGTTACCAAGATATATACATATATGCAGAGCCTTTTCACTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACTTACCGTAT]


>consensus_4642#0 GCCTCCGCACTGCATTCCTTCCAGTTCGTTTCGTTGCCGTTCGCTCAGCGCTCGCTTCCA CGGTTCCCCCACCCACCACGCGCATTCGCATTCGCATTCGCAGCAGCTGAGACTTGGGAT ATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCT CCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGG GCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCT TCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGA GAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTTAATGTAAAAC GAGATTACAGGGAGATCCTACAAACCCAAGATACCCATCATGCTGTATGGACTTTGGATA AGACAATAGCAAAACTGGAGACAGAACTTTCCGCTGCGAGAACTCTGCAGGAATCATTTC TCAATGGTTCTCCGGTTTCAGAAGGGCATAAGGGTTCGGACTCTACAGGAAGGCAGAAAT ATCTTATGGTGATAGGCATTAATACTGCTTTTAGCAGTCGACAGAGAAGGGATTCTATCC GTAACACATGGATGCCTCAAGGAATAAAGAGAAGAAAACTAGAAGAAGAGAAGGGGATCG TAATCCGTTTTGTTATTGGTCACAGTGCTATTTCAGGTGGCATTGTGGAGAGAGCAATCA AGGCAGAGGAAAGAAAACATGGAGATTTCATGAGAATAGACCATGTTGAAGGATACCTTG AATTGTCTGGCAAAACCAAGACATACTTTGCTACAGCTGTTTCTTTATGGGATGCTGACT TCTATGTGAAGGTTGACGATGATGTGCATGTTAATATAGCAACACTCGGACAGATTTTAT CGAATCATGTTAAGAAGCCCAGAGTATATATTGGATGCATGAAGTCCGGTCCCGTCTTAT CTGACAAAGATGTGAGGTACTATGAACCTGAGCATTGGAAATTTGGTGACCAGTATTTCC GGCATGCAACTGGTCAATTGTATGCTATTTCAAAAGATTTGGCAACTTACATATCAATAA ACAAACGTGTTTTGCATAAGTACATCAATGAGGATGTGTCTTTGGGAGCCTGGTTCATAG GATTAGATGTTGAGCATATTGATGAGCGCCGACTTTGTTGTGGTACTCCACCTGATTGCG AATGGAAAGCTCAGGCAGGGAATACATGCGCAGTGTCATTTGATTGGAAATGCAGTGGCA TATGTGACTCTGTGGAGAACATGCAGTGGGTGCACAATAGATGTGGAGAAAGCGAGAAAT CTCTCTGGATTTCTTCTTTCTAAGCAGGGCCACCGGAAGATCTGACATGACTAGCTGAAT GCTACATTGTATAACAGATCAGAACATGTTGTACATTGTGCAGAAAATGTATTAGATTCA TCTTGTAGCAATAGTAGCTAAGCTAGGCTCAATTTTGTGATTGGGGCTCACCATACACCG ATACACCAACTATGCAGACCGTGGTTTCACTGAGACTGCCGGTGACGGTTGAGGGTACAT AGGCTGATCTACTTTTTCTCATGTTTTAGGTTGCCATTTTTGTTGTAACTTGTAAGGATC TAATGTATTCTGTGCATTGTTACCAAGATATATACATATATGCAGAGCCTTTTCACTCTT CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA CCCCTGTCATGCCGTTACTTACCGTAT



consensusID : consensus_4642#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence
                              [TTCGCAGCAGCTGAGACTTGGGATATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCTCCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGGGCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCTTCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGAGAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTGTACCATTCCCCAACCACAAGTAATTCCTGACAGTATTTGCATATGTCACATAGCGAAGAACGAATTGCATATTATCTCTTTAATTAGAATACTCTTTATTTTTTTTTCTTGAAAACGCAAGAGAATTGCATTTCATTTCA]

[+] EMBL AK108015             [TTCGCAGCAGCTGAGACTTGGGATATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCTCCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGGGCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCTTCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGAGAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTGTACCATTCCCCAACCACAAGTAATTCCTGACAGTATTTGCATATGTCACATAGCGAAGAACGAATTGCATATTATCTCTTTAATTAGAATACTCTTTATTTTTTTTTCTTGAAAACGCAAGAGAATTGCATTTCATTTCA]


>consensus_4642#1 TTCGCAGCAGCTGAGACTTGGGATATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGAT TCCCCCCCTTTCTTTCCTCACTCTCCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCA TGAGCTGGAGGAGAGGGGACGGGGGCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCG GGAGCTTCTTCCTCGGCCTGCTCTTCACCGACAGGATGTGGACACTGCCTGAGGTTACTG AAGTTGCCAGGCCAAATGGAAGGAGAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTA ATTCTGCTAAGGTGTACCATTCCCCAACCACAAGTAATTCCTGACAGTATTTGCATATGT CACATAGCGAAGAACGAATTGCATATTATCTCTTTAATTAGAATACTCTTTATTTTTTTT TCTTGAAAACGCAAGAGAATTGCATTTCATTTCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4642#0      GCCTCCGCACTGCATTCCTTCCAGTTCGTTTCGTTGCCGTTCGCTCAGCGCTCGCTTCCA 60
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      CGGTTCCCCCACCCACCACGCGCATTCGCATTCGCATTCGCAGCAGCTGAGACTTGGGAT 120
consensus_4642#1      ------------------------------------TTCGCAGCAGCTGAGACTTGGGAT 24
                                                          ************************

consensus_4642#0      ATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCT 180
consensus_4642#1      ATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCT 84
                      ************************************************************

consensus_4642#0      CCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGG 240
consensus_4642#1      CCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGG 144
                      ************************************************************

consensus_4642#0      GCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCT 300
consensus_4642#1      GCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCT 204
                      ************************************************************

consensus_4642#0      TCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGA 360
consensus_4642#1      TCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGA 264
                      ************************************************************

consensus_4642#0      GAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTTAATGTAAAAC 420
consensus_4642#1      GAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTGTACC------ 318
                      *************************************************  *        

consensus_4642#0      GAGATTACAGGGAGATCCTACAAACCCAAGATACCCATCATGCTGTATGGACTTTGGATA 480
consensus_4642#1      --------------ATTCCCCAACCACAAGTAATTCCTGACAGTATTTGCATATGTCACA 364
                                    ** *  *** * ****  *  * * *   * * ** *  *   * *

consensus_4642#0      AGACAATAGCAAAACTGGAGACAGAACTTTCCGCTGCGAGAACTCTGCAGGAATCATTTC 540
consensus_4642#1      TAGCGAAGAACGAATTGCATATT-ATCTCTTTAATTAGAATACTCT-------TTATTTT 416
                         * *      ** ** * *   * ** *    *  **  *****       * **** 

consensus_4642#0      TCAATGGTTCTCCGGTTTCAGAAGGGCATAAGGGTTCGGACTCTACAGGAAGGCAGAAAT 600
consensus_4642#1      TT-----TTTCTTGAAAACGCAAGAGAATTGCATTTC--ATTTCA--------------- 454
                      *      **    *    *  *** * **     ***  * *  *               

consensus_4642#0      ATCTTATGGTGATAGGCATTAATACTGCTTTTAGCAGTCGACAGAGAAGGGATTCTATCC 660
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      GTAACACATGGATGCCTCAAGGAATAAAGAGAAGAAAACTAGAAGAAGAGAAGGGGATCG 720
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      TAATCCGTTTTGTTATTGGTCACAGTGCTATTTCAGGTGGCATTGTGGAGAGAGCAATCA 780
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      AGGCAGAGGAAAGAAAACATGGAGATTTCATGAGAATAGACCATGTTGAAGGATACCTTG 840
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      AATTGTCTGGCAAAACCAAGACATACTTTGCTACAGCTGTTTCTTTATGGGATGCTGACT 900
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      TCTATGTGAAGGTTGACGATGATGTGCATGTTAATATAGCAACACTCGGACAGATTTTAT 960
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      CGAATCATGTTAAGAAGCCCAGAGTATATATTGGATGCATGAAGTCCGGTCCCGTCTTAT 1020
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      CTGACAAAGATGTGAGGTACTATGAACCTGAGCATTGGAAATTTGGTGACCAGTATTTCC 1080
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      GGCATGCAACTGGTCAATTGTATGCTATTTCAAAAGATTTGGCAACTTACATATCAATAA 1140
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      ACAAACGTGTTTTGCATAAGTACATCAATGAGGATGTGTCTTTGGGAGCCTGGTTCATAG 1200
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      GATTAGATGTTGAGCATATTGATGAGCGCCGACTTTGTTGTGGTACTCCACCTGATTGCG 1260
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      AATGGAAAGCTCAGGCAGGGAATACATGCGCAGTGTCATTTGATTGGAAATGCAGTGGCA 1320
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      TATGTGACTCTGTGGAGAACATGCAGTGGGTGCACAATAGATGTGGAGAAAGCGAGAAAT 1380
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      CTCTCTGGATTTCTTCTTTCTAAGCAGGGCCACCGGAAGATCTGACATGACTAGCTGAAT 1440
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      GCTACATTGTATAACAGATCAGAACATGTTGTACATTGTGCAGAAAATGTATTAGATTCA 1500
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      TCTTGTAGCAATAGTAGCTAAGCTAGGCTCAATTTTGTGATTGGGGCTCACCATACACCG 1560
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      ATACACCAACTATGCAGACCGTGGTTTCACTGAGACTGCCGGTGACGGTTGAGGGTACAT 1620
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      AGGCTGATCTACTTTTTCTCATGTTTTAGGTTGCCATTTTTGTTGTAACTTGTAAGGATC 1680
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      TAATGTATTCTGTGCATTGTTACCAAGATATATACATATATGCAGAGCCTTTTCACTCTT 1740
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1800
consensus_4642#1      ------------------------------------------------------------
                                                                                  

consensus_4642#0      CCCCTGTCATGCCGTTACTTACCGTAT 1827
consensus_4642#1      ---------------------------
                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)