cluster # 4649

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Oryza sativa
cluster # 4649 cluster # 4649 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4649#0 length = 579 sequences # 1

consensus_4649#1 length = 346 sequences # 2

consensusID : consensus_4649#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [TAGCTGCAAAGTCCTCAAGGCGAACGGCCTCCATCTTCTCCTTCCAGCTCCTCCCATGGCGTCCCTCGTCGCCATCGCCATCGCCATGGCTCTCATGGTGCAGAGGATATCCCAGCCATGGCTGAAATTAACTTGACGCATATCATCTCATCATCACTTGCATTTCAACTTCTGGATTGTGCAGACATGTTTAGCTGATGCAGTAAACGTTGCCTGTTTGAATTGGTCCTTGATCAGGTGGTTCAACCTGGCCGGCAGATGACTGCCTTTGCTGCTCGGACGTCGCCGGCGGCGGCGGCGGAGGCGTTCTGGCGTGCCGCCATGCCCGGCGCTCCCATGCCGGACGCCATCGTCGAGCTCCTCCACCATGGTGAATCCGTGAACTTAATTGTGTACACTACTTTAAATGATACTAGTATTAGTGATGGTCACTACTAGAAAACAAGTTTTTGCAGGCAGCTAGTAAATATTTCGCCGGTAGGCTAAGGCCTGCGAAAGTCGTTGATTTTTGCAGGCGGAGCCTCTATCCGCTTGCGCAGACGGCATCCTTGTATCACCCACTTGCAAAAAGTTTTTGGG]

[+] EMBL AK109240             [TAGCTGCAAAGTCCTCAAGGCGAACGGCCTCCATCTTCTCCTTCCAGCTCCTCCCATGGCGTCCCTCGTCGCCATCGCCATCGCCATGGCTCTCATGGTGCAGAGGATATCCCAGCCATGGCTGAAATTAACTTGACGCATATCATCTCATCATCACTTGCATTTCAACTTCTGGATTGTGCAGACATGTTTAGCTGATGCAGTAAACGTTGCCTGTTTGAATTGGTCCTTGATCAGGTGGTTCAACCTGGCCGGCAGATGACTGCCTTTGCTGCTCGGACGTCGCCGGCGGCGGCGGCGGAGGCGTTCTGGCGTGCCGCCATGCCCGGCGCTCCCATGCCGGACGCCATCGTCGAGCTCCTCCACCATGGTGAATCCGTGAACTTAATTGTGTACACTACTTTAAATGATACTAGTATTAGTGATGGTCACTACTAGAAAACAAGTTTTTGCAGGCAGCTAGTAAATATTTCGCCGGTAGGCTAAGGCCTGCGAAAGTCGTTGATTTTTGCAGGCGGAGCCTCTATCCGCTTGCGCAGACGGCATCCTTGTATCACCCACTTGCAAAAAGTTTTTGGG]




>consensus_4649#0
TAGCTGCAAAGTCCTCAAGGCGAACGGCCTCCATCTTCTCCTTCCAGCTCCTCCCATGGC
GTCCCTCGTCGCCATCGCCATCGCCATGGCTCTCATGGTGCAGAGGATATCCCAGCCATG
GCTGAAATTAACTTGACGCATATCATCTCATCATCACTTGCATTTCAACTTCTGGATTGT
GCAGACATGTTTAGCTGATGCAGTAAACGTTGCCTGTTTGAATTGGTCCTTGATCAGGTG
GTTCAACCTGGCCGGCAGATGACTGCCTTTGCTGCTCGGACGTCGCCGGCGGCGGCGGCG
GAGGCGTTCTGGCGTGCCGCCATGCCCGGCGCTCCCATGCCGGACGCCATCGTCGAGCTC
CTCCACCATGGTGAATCCGTGAACTTAATTGTGTACACTACTTTAAATGATACTAGTATT
AGTGATGGTCACTACTAGAAAACAAGTTTTTGCAGGCAGCTAGTAAATATTTCGCCGGTA
GGCTAAGGCCTGCGAAAGTCGTTGATTTTTGCAGGCGGAGCCTCTATCCGCTTGCGCAGA
CGGCATCCTTGTATCACCCACTTGCAAAAAGTTTTTGGG

consensusID : consensus_4649#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 346
fasta sequence

                              [GTCCTCAAGGCGAACGGCCTCCATCTTCTCCTTCCAGCTCCTCCCATGGCGTCCCTCGTCGCCATCGCCATCGCCATGGCTCTCATGGTGGTTCAACCTGGCCGGCAGATGACTGCCTTTGCTGCTCGGACGTCGCCGGCGGNGCGGCGGAGGCGTTCTGGCGTGCCGCCATGCCCGGCGCTCCCATGCCGGACGCCATCGTCGAGCTCCTCCANCATGAGCACGGCGTTGCTAGCGCCGGCGGCAAGGCCAACGGCGGCGGCGACGGTCCACCGCCGCCGATGAACTTCAACTACGACGACTACAGGGCCCTGCCTCGGAGCGACGCCCCTTCCCCGGATGCATT]

[+] EMBL C72467               [GTCCTCAAGGCGAACGGCCTCCATCTTCTCCTTCCAGCTCCTCCCATGGCGTCCCTCGTCGCCATCGCCATCGCCATGGCTCTCATGGTGGTTCAACCTGGCCGGCAGATGACTGCCTTTGCTGCTCGGACGTCGCCGGCGGNGCGGCGGAGGCGTTCTGGCGTGCCGCCATGCCCGGCGCTCCCATGCCGGACGCCATCGTCGAGCTCCTCCANCATGAGCACGGCGTTGCTAGCGCCGGCGGCAAGGCCAACGGCGGCGGCGACGGTCCACCGCCGCCGATGAACTTCAACTACGACGACTACAGGGCCCTGCCTCGGAGCGACGCCCCTTCCCCGGATGCATT]
[+] EMBL C71788               [    TCAAGGCGAACGGCCTCCATCTTCTCCTTCCAGCTCCTCCCATGGCGTCCCTCGTCGCCATCGCCATCGCCATGGCTCTNATGGTGGTTCAACCTGGCCGGCAGATGACTGCNTTTNCTGCTCGGACGTCGCCGGCGGGGCGGCGGAGGCGTTCTGGCGTGCCGCCATGCCCGGNGCTCCCATGCCGGACGCCATCGTCNAGCTCCTCCACCATNAGCACGGCGTTGCTAGCGCCGGCGGCAAGGCCAACGGNGGCGGCna                                                                                 ]




>consensus_4649#1
GTCCTCAAGGCGAACGGCCTCCATCTTCTCCTTCCAGCTCCTCCCATGGCGTCCCTCGTC
GCCATCGCCATCGCCATGGCTCTCATGGTGGTTCAACCTGGCCGGCAGATGACTGCCTTT
GCTGCTCGGACGTCGCCGGCGGNGCGGCGGAGGCGTTCTGGCGTGCCGCCATGCCCGGCG
CTCCCATGCCGGACGCCATCGTCGAGCTCCTCCANCATGAGCACGGCGTTGCTAGCGCCG
GCGGCAAGGCCAACGGCGGCGGCGACGGTCCACCGCCGCCGATGAACTTCAACTACGACG
ACTACAGGGCCCTGCCTCGGAGCGACGCCCCTTCCCCGGATGCATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4649#0      TAGCTGCAAAGTCCTCAAGGCGAACGGCCTCCATCTTCTCCTTCCAGCTCCTCCCATGGC 60
consensus_4649#1      ------------------------------------------------------------
                                                                                  

consensus_4649#0      GTCCCTCGTCGCCATCGCCATCGCCATGGCTCTCATGGTGCAGAGGATATCCCAGCCATG 120
consensus_4649#1      ------------------------------------------------------------
                                                                                  

consensus_4649#0      GCTGAAATTAACTTGACGCATATCATCTCATCATCACTTGCATTTCAACTTCTGGATTGT 180
consensus_4649#1      --------GTCCTCAAGGCGAACGGCCTC--CATCTTCTCC-TTCCAGCTCCTCCCATG- 48
                                 **  * **  *    ***  ****   * * ** ** ** **    ** 

consensus_4649#0      GCAGACATGTTTAGCTGATGCAGTAAACGTTGCCTGTTTGAATTGGTCCTTGATCAGGTG 240
consensus_4649#1      ----GCGTCCCTCGTCGCCATCGCCATCGCCA-----------TGGCTCTCA---TGGTG 90
                           * *   * *  *     *  * **              ***  **      ****

consensus_4649#0      GTTCAACCTGGCCGGCAGATGACTGCCTTTGCTGCTCGGACGTCGCCGGCGGCGGCGGCG 300
consensus_4649#1      GTTCAACCTGGCCGGCAGATGACTGCCTTTGCTGCTCGGACGTCGCCGGCGGNG-CGGCG 149
                      **************************************************** * *****

consensus_4649#0      GAGGCGTTCTGGCGTGCCGCCATGCCCGGCGCTCCCATGCCGGACGCCATCGTCGAGCTC 360
consensus_4649#1      GAGGCGTTCTGGCGTGCCGCCATGCCCGGCGCTCCCATGCCGGACGCCATCGTCGAGCTC 209
                      ************************************************************

consensus_4649#0      CTCCACCATGGTGAATCCGTGAACTTAATTGTGTACACTACTTTAAATGATACTAGTATT 420
consensus_4649#1      CTCCANCATGA---------GCACGGCGTTGCTAGCGCCGGCGGCAAGGCCAACGGCGGC 260
                      ***** ****          * **    ***    * *       ** *  *   *    

consensus_4649#0      AGTGATGGTC-ACTACTAGAAAACAAGTTTTTGCA-GGCAGCTAGTAAATATTTCGCCGG 478
consensus_4649#1      GGCGACGGTCCACCGCCGCCGATGAACTTCAACTACGACGACTACAGGGCCCTGCCTCGG 320
                       * ** **** **  *     *  ** **     * * *  ***        * *  ***

consensus_4649#0      TAGGCTAAGGCCTGCGAAAGT-CGTTGATTTTTGCAGGCGGAGCCTCTATCCGCTTGCGC 537
consensus_4649#1      AGCGACGCCCCTTCCCCGGATGCATT---------------------------------- 346
                         *      * * *     * * **                                  

consensus_4649#0      AGACGGCATCCTTGTATCACCCACTTGCAAAAAGTTTTTGGG 579
consensus_4649#1      ------------------------------------------