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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4653#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 882 fasta sequence
[CTCTTGAGAAAGAAGAAGATTTATATTCTAGGGAGTAGAATTTGGTCATAGAATTTGTGATCTCAAATAAATATGGAAGCAAGCCTCAAATCTCAGATTATGGTTTATCAGGAAGGAGGAGTGCTTCAAGCATCTGCGAGGAAGAACCCATTCAGATTACGCTGCATTTTTTTTTGTTCTCTCGCCTCCCATCCCCATCTCCGCGTCTCGCGACCCCGAGCTCTTCCTCGCCTCGCCGATCGCCGCGCCGCTCTCCGGCGAAGCGCGGATCGAGCCGCCGCCATCCGCCATGGCGGACCCCGTGGAGCTCGGAGCGCCTCCCTCCCCCGAGCCCCTCTCTCCCTTGAGGGAGCTGATCGACGTCCCCACCGTGGTGTACGTCGCCGACGAGGACCCCAAGTTCGCCGCTCTCGCCGACCAGGCGTACGCCGGGTTCCCCTTCCTCTTCGTCACCATGAGCCTAAAAGCCCTGGCCTACAAAAGGATGGATCTAAATGAACTCGATGAAGAGCACAGTGCTCATTACCTTCGCCTAAGGTTTGAGAACCAACTTCAGGATGCCATGGAAGGTATGGCGGCTGGTGGAGAGGAAATGAGGGTGGCGCTGGCCAGGATGGAGACCCTGAAGAAATCGGTGCAGTTTCATTTTCGCCGTATGCAATACGCAGCGCATGAGTTGCGGAAGGTGGTGCTTAAAGAGGAAGAGATGTACAAGAAGCTGGTTACCCTGACCAACTGAGCCAAGGGAGAATGGCGTAACGATGGCTTCTGTGGTGTAATCTGGGGGTAAATGTCTCTGTGCTCAAGAATTCTCCTCTCATGAGACCTGTTTCCATCTCCTGCCACGTAACTACTCCACGTACTAGAACTTGGACTCGAAAA]
[+] EMBL AK109324 [CTCTTGAGAAAGAAGAAGATTTATATTCTAGGGAGTAGAATTTGGTCATAGAATTTGTGATCTCAAATAAATATGGAAGCAAGCCTCAAATCTCAGATTATGGTTTATCAGGAAGGAGGAGTGCTTCAAGCATCTGCGAGGAAGAACCCATTCAGATTACGCTGCATTTTTTTTTGTTCTCTCGCCTCCCATCCCCATCTCCGCGTCTCGCGACCCCGAGCTCTTCCTCGCCTCGCCGATCGCCGCGCCGCTCTCCGGCGAAGCGCGGATCGAGCCGCCGCCATCCGCCATGGCGGACCCCGTGGAGCTCGGAGCGCCTCCCTCCCCCGAGCCCCTCTCTCCCTTGAGGGAGCTGATCGACGTCCCCACCGTGGTGTACGTCGCCGACGAGGACCCCAAGTTCGCCGCTCTCGCCGACCAGGCGTACGCCGGGTTCCCCTTCCTCTTCGTCACCATGAGCCTAAAAGCCCTGGCCTACAAAAGGATGGATCTAAATGAACTCGATGAAGAGCACAGTGCTCATTACCTTCGCCTAAGGTTTGAGAACCAACTTCAGGATGCCATGGAAGGTATGGCGGCTGGTGGAGAGGAAATGAGGGTGGCGCTGGCCAGGATGGAGACCCTGAAGAAATCGGTGCAGTTTCATTTTCGCCGTATGCAATACGCAGCGCATGAGTTGCGGAAGGTGGTGCTTAAAGAGGAAGAGATGTACAAGAAGCTGGTTACCCTGACCAACTGAGCCAAGGGAGAATGGCGTAACGATGGCTTCTGTGGTGTAATCTGGGGGTAAATGTCTCTGTGCTCAAGAATTCTCCTCTCATGAGACCTGTTTCCATCTCCTGCCACGTAACTACTCCACGTACTAGAACTTGGACTCGAAAA]
[+] EMBL OSS13914A [ ATATTCTAGGGAGTAGAATTTGGTCATAGAATTTGTNATCTCAAATAAATATGGAAGCAAGCCTCAAATCTCAGATTATGGTTTATCAGGAAGGAGGAGTGCTTCAAGCATCTGCNAGGAAGAACCCATTCANATTACGCTGCATTTTTTTTTGNTCTCTNGCCTCCCATCCCCATCTCCGNGTCTCG GACCCCGAGCTCTTCCTCGCCTCGGGGATCGCCGCGCCGCTCTCCGGCGAAG GCGGNTCGAGCCGCCGGCATCCGNCATGGCGGACCCCGTGGAGCTCGGAGCGCCTCC ]
consensusID : consensus_4653#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence
[TTGAGGGAGCTGATCGACGTCCCCACCGTGGTGTACGTCGCCGACGAGGACCCCAAGTTCGCCGCTCTCGCCGACCAGGCGTACGCCGGGTTCCCCTTCCTCTTCGTCACCATGAGCCTAAAAGCCCTGGCCTACAAAAGGATGGATCTAAATGAACTCGATGAAGAGCACAGTGCTCATTACCTTCGCCTAAGGTTTGAGAACCAACTTCAGGATGCCATGGAAGGTATGGCGGCTGGTGGAGAGGAAATGAGGGTGGCGCTGGCCAGGATGGAGACCCTGAAGAAATCGGTGCAGTTTCATTTTCGCCGTATGCAATACGCAGCGCATGAGTTGCGGANNNTGGTGCTTAAAGAGGANGNNATGTACAAGAAGCTGGTNANNNTGACCAACTGAGNCAAGGNNNNNNGGNNNNNNGATGGCTTCTNNNNNNNNNNCTGNGGNNNNNTNNN]
[+] EMBL CF196616 [TTGAGGGAGCTGATCGACGTCCCCACCGTGGTGTACGTCGCCGACGAGGACCCCAAGTTCGCCGCTCTCGCCGACCAGGCGTACGCCGGGTTCCCCTTCCTCTTCGTCACCATGAGCCTAAAAGCCCTGGCCTACAAAAGGATGGATCTAAATGAACTCGATGAAGAGCACAGTGCTCATTACCTTCGCCTAAGGTTTGAGAACCAACTTCAGGATGCCATGGAAGGTATGGCGGCTGGTGGAGAGGAAATGAGGGTGGCGCTGGCCAGGATGGAGACCCTGAAGAAATCGGTGCAGTTTCATTTTCGCCGTATGCAATACGCAGCGCATGAGTTGCGGANNNTGGTGCTTAAAGAGGANGNNATGTACAAGAAGCTGGTNANNNTGACCAACTGAGNCAAGGNNNNNNGGNNNNNNGATGGCTTCTNNNNNNNNNNCTGNGGNNNNNTNNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4653#0 CTCTTGAGAAAGAAGAAGATTTATATTCTAGGGAGTAGAATTTGGTCATAGAATTTGTGA 60
consensus_4653#1 ------------------------------------------------------------
consensus_4653#0 TCTCAAATAAATATGGAAGCAAGCCTCAAATCTCAGATTATGGTTTATCAGGAAGGAGGA 120
consensus_4653#1 ------------------------------------------------------------
consensus_4653#0 GTGCTTCAAGCATCTGCGAGGAAGAACCCATTCAGATTACGCTGCATTTTTTTTTGTTCT 180
consensus_4653#1 ------------------------------------------------------------
consensus_4653#0 CTCGCCTCCCATCCCCATCTCCGCGTCTCGCGACCCCGAGCTCTTCCTCGCCTCGCCGAT 240
consensus_4653#1 ------------------------------------------------------------
consensus_4653#0 CGCCGCGCCGCTCTCCGGCGAAGCGCGGATCGAGCCGCCGCCATCCGCCATGGCGGACCC 300
consensus_4653#1 ------------------------------------------------------------
consensus_4653#0 CGTGGAGCTCGGAGCGCCTCCCTCCCCCGAGCCCCTCTCTCCCTTGAGGGAGCTGATCGA 360
consensus_4653#1 -------------------------------------------TTGAGGGAGCTGATCGA 17
*****************
consensus_4653#0 CGTCCCCACCGTGGTGTACGTCGCCGACGAGGACCCCAAGTTCGCCGCTCTCGCCGACCA 420
consensus_4653#1 CGTCCCCACCGTGGTGTACGTCGCCGACGAGGACCCCAAGTTCGCCGCTCTCGCCGACCA 77
************************************************************
consensus_4653#0 GGCGTACGCCGGGTTCCCCTTCCTCTTCGTCACCATGAGCCTAAAAGCCCTGGCCTACAA 480
consensus_4653#1 GGCGTACGCCGGGTTCCCCTTCCTCTTCGTCACCATGAGCCTAAAAGCCCTGGCCTACAA 137
************************************************************
consensus_4653#0 AAGGATGGATCTAAATGAACTCGATGAAGAGCACAGTGCTCATTACCTTCGCCTAAGGTT 540
consensus_4653#1 AAGGATGGATCTAAATGAACTCGATGAAGAGCACAGTGCTCATTACCTTCGCCTAAGGTT 197
************************************************************
consensus_4653#0 TGAGAACCAACTTCAGGATGCCATGGAAGGTATGGCGGCTGGTGGAGAGGAAATGAGGGT 600
consensus_4653#1 TGAGAACCAACTTCAGGATGCCATGGAAGGTATGGCGGCTGGTGGAGAGGAAATGAGGGT 257
************************************************************
consensus_4653#0 GGCGCTGGCCAGGATGGAGACCCTGAAGAAATCGGTGCAGTTTCATTTTCGCCGTATGCA 660
consensus_4653#1 GGCGCTGGCCAGGATGGAGACCCTGAAGAAATCGGTGCAGTTTCATTTTCGCCGTATGCA 317
************************************************************
consensus_4653#0 ATACGCAGCGCATGAGTTGCGGAAGGTGGTGCTTAAAGAGGAAGAGATGTACAAGAAGCT 720
consensus_4653#1 ATACGCAGCGCATGAGTTGCGGANNNTGGTGCTTAAAGAGGANGNNATGTACAAGAAGCT 377
*********************** **************** * **************
consensus_4653#0 GGTTACCCTGACCAACTGAGCCAAGGGAGAATGGCGTAACGATGGCTTCTGTGGTGTAAT 780
consensus_4653#1 GGTNANNNTGACCAACTGAGNCAAGGNNNNNNGGNNNNNNGATGGCTTCTNNNNNNNNNN 437
*** * ************ ***** ** **********
consensus_4653#0 CTGGGGGTAAATGTCTCTGTGCTCAAGAATTCTCCTCTCATGAGACCTGTTTCCATCTCC 840
consensus_4653#1 CTGNGGNNNNNTNNN--------------------------------------------- 452
*** ** *
consensus_4653#0 TGCCACGTAACTACTCCACGTACTAGAACTTGGACTCGAAAA 882
consensus_4653#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||