These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1197 fasta sequence [GCTGTTCTTGGCTTCAAGAAGCTGCGTGTTGCAGAGACTCAGAGAGGCTTGCAAGCAAAATCTACTATTCATTTGGGTCTTGGGTTCTTTGCCCTGATTAATTGTTGGGCGGTTTTGGTGCGAAAGTTTCAGTTTCTTGTGTGATGCAAAAAAAACTGAAATTTTTGTGGAGAGGCAAGGATTGAAACTGCTTGGGTGCCACCGAAGATCGAGTTCATGGTGAATATTGTGAGAGTTCTTGGTGAAGTTCTTGCCTGAGAAGGAAGGTGTGAGAGTTCTTGTCAAGGTTATTGCCTGAGAAGGAAGGTTTTGTGGTCTATCTTGCTGTGATTTGATTTCTCTCCCCTTCTGCAAATCCCCGCCAAAAAATGAGAAGAATTCATTGACATTCTCCTCTCCAATTTCTGATTGTCCTTGCAATCCAGAATGAGCTCAGTTTCTTTGGATGTCATGGCTCCAGCTCTGAGACAAATTATTCACTTATACCCTCTTCAACTACTCTAGCTTCTCCTTTTTTTCCCCTTAGTGTTGTCTGCTTATCTGTATCTCTGTGCAATTCATGGCCCTTTGATACCATTTTAGCCTCCAATTTTCATTGGGATTCATCATGGATAGTACCTTTAGAAAGCTTAAATTAGTTCTAGCTCTTGTTGGGATCATCGACAAGAGGATCGCCGGGACAATCAGGCCAGAATCGCTGAGGAAGTACGGGGAGACGGTGGAGAAATGCCTCGCGGAGTACGGCGTCGAACGGCCTACGATGGGAGATGTCCTGTGGAACCTGGAGTTTGTGCTCCAGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATAGCATGAATCAGATCTCTGAACTCCCTTCAAATGCCCAGAGGATAAGCTCCCTGGAGATCAGCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCTTCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCACTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGATTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGAATTTTTGTTACCCCTATACTGTACATACATATGTTTCTTATTTATCTTAAAGCCTGAAAAT] [+] EMBL AK067124 [GCTGTTCTTGGCTTCAAGAAGCTGCGTGTTGCAGAGACTCAGAGAGGCTTGCAAGCAAAATCTACTATTCATTTGGGTCTTGGGTTCTTTGCCCTGATTAATTGTTGGGCGGTTTTGGTGCGAAAGTTTCAGTTTCTTGTGTGATGCAAAAAAAACTGAAATTTTTGTGGAGAGGCAAGGATTGAAACTGCTTGGGTGCCACCGAAGATCGAGTTCATGGTGAATATTGTGAGAGTTCTTGGTGAAGTTCTTGCCTGAGAAGGAAGGTGTGAGAGTTCTTGTCAAGGTTATTGCCTGAGAAGGAAGGTTTTGTGGTCTATCTTGCTGTGATTTGATTTCTCTCCCCTTCTGCAAATCCCCGCCAAAAAATGAGAAGAATTCATTGACATTCTCCTCTCCAATTTCTGATTGTCCTTGCAATCCAGAATGAGCTCAGTTTCTTTGGATGTCATGGCTCCAGCTCTGAGACAAATTATTCACTTATACCCTCTTCAACTACTCTAGCTTCTCCTTTTTTTCCCCTTAGTGTTGTCTGCTTATCTGTATCTCTGTGCAATTCATGGCCCTTTGATACCATTTTAGCCTCCAATTTTCATTGGGATTCATCATGGATAGTACCTTTAGAAAGCTTAAATTAGTTCTAGCTCTTGTTGGGATCATCGACAAGAGGATCGCCGGGACAATCAGGCCAGAATCGCTGAGGAAGTACGGGGAGACGGTGGAGAAATGCCTCGCGGAGTACGGCGTCGAACGGCCTACGATGGGAGATGTCCTGTGGAACCTGGAGTTTGTGCTCCAGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATAGCATGAATCAGATCTCTGAACTCCCTTCAAATGCCCAGAGGATAAGCTCCCTGGAGATCAGCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCTTCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCACTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGATTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGAATTTTTGTTACCCCTATACTGTACATACATATGTTTCTTATTTATCTTAAAGCCTGAAAAT] consensusID : consensus_4666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 777 fasta sequence [ATGTTAGCACCGCCGTGAAAGGGAGTTTCGGCTATCTTGATCCTGAGTACTACAGGAGGCAGAAGCTGACCGACAAGTCAGACGTGTACTCGTTCGGTGTGGTCTTGCTAGAGGTGATCTGCGCAAGGCCAGTCATCGACCCGACGCTTCCAAGAGACATGATCAACCTTGCAGAGTGGGCTATTAAGTGGCAAAAGAGAGGAGAGCTTGATCAGATCATCGACAAGAGGATCGCCGGGACAATCAGGCCAGAATCGCTGAGGAAGTACGGGGAGACGGTGGAGAAATGCCTCGCGGAGTACGGCGTCGAACGGCCTACGATGGGAGATGTCCTGTGGAACCTGGAGTTCGTGCTCCAGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATAGCATGAATCAGATCTCTGAACTCCCTTCAAATGCCCAGAGGATAAGCTCCCTGGAGATCAGCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCTTCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCACTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGATTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGAATTTTTGTTACCCCTATACTGTACATACATATGTTTCGTATTTATCTTAAAGCCTGAAAATGGATTATGTTAAAAAAAGGA] [-] EMBL CB630870 [ATGTTAGCACCGCCGTGAAAGGGAGTTTCGGCTATCTTGATCCTGAGTACTACAGGAGGCAGAAGCTGACCGACAAGTCAGACGTGTACTCGTTCGGTGTGGTCTTGCTAGAGGTGATCTGCGCAAGGCCAGTCATCGACCCGACGCTTCCAAGAGACATGATCAACCTTGCAGAGTGGGCTATTAAGTGGCAAAAGAGAGGAGAGCTTGATCAGATCATCGACAAGAGGATCGCCGGGACAATCAGGCCAGAATCGCTGAGGAAGTACGGGGAGACGGTGGAGAAATGCCTCGCGGAGTACGGCGTCGAACGGCCTACGATGGGAGATGTCCTGTGGAACCTGGAGTTCGTGCTCCAGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATAGCATGAATCAGATCTCTGAACTCCCTTCAAATGCCCAGAGGATAAGCTCCCTGGAGATCAGCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCTTCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCACTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGATTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGAATTTTTGTTACCCCTATACTGTACATACATATGTTTCGTATTTATCTTAAAGCCTGAAAATGGATTATGTTAAAAAAAGGA] consensusID : consensus_4666#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [CTACGATGGGAGATGTCCCTGTGGANCCTGGAGTTTGTGCTCCCAGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATAGCATGAATCAGATCTCTGAACTCCCTTCAAATNCCCAGAGGATAAGCTCCCTGGAGATCAGCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCTTCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCACTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGATTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGAATTTTTGTTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU033168 [CTACGATGGGAGATGTCCCTGTGGANCCTGGAGTTTGTGCTCCCAGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATAGCATGAATCAGATCTCTGAACTCCCTTCAAATNCCCAGAGGATAAGCTCCCTGGAGATCAGCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCTTCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCACTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGATTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGAATTTTTGTTAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4666#0 GCTGTTCTTGGCTTCAAGAAGCTGCGTGTTGCAGAGACTCAGAGAGGCTTGCAAGCAAAA 60 consensus_4666#2 ------------------------------------------------------------ consensus_4666#1 ------------------------------------------------------------ consensus_4666#0 TCTACTATTCATTTGGGTCTTGGGTTCTTTGCCCTGATTAATTGTTGGGCGGTTTTGGTG 120 consensus_4666#2 ------------------------------------------------------------ consensus_4666#1 ------------------------------------------------------------ consensus_4666#0 CGAAAGTTTCAGTTTCTTGTGTGATGCAAAAAAAACTGAAATTTTTGTGGAGAGGCAAGG 180 consensus_4666#2 ------------------------------------------------------------ consensus_4666#1 ------------------------------------------------------------ consensus_4666#0 ATTGAAACTGCTTGGGTGCCACCGAAGATCGAGTTCATGGTGAATATTGTGAGAGTTCTT 240 consensus_4666#2 ------------------------------------------------------------ consensus_4666#1 ------------------------------------------------------------ consensus_4666#0 GGTGAAGTTCTTGCCTGAGAAGGAAGGTGTGAGAGTTCTTGTCAAGGTTATTGCCTGAGA 300 consensus_4666#2 ------------------------------------------------------------ consensus_4666#1 ------------------------------------------------------------ consensus_4666#0 AGGAAGGTTTTGTGGTCTATCTTGCTGTGATTTGATTTCTCTCCCCTTCTGCAAATCCCC 360 consensus_4666#2 ------------------------------------------------------------ consensus_4666#1 ------------------------------------------------------------ consensus_4666#0 GCCAAAAAATGAGAAGAATTCATTGACATTCTCCTCTCCAATTTCTGATTGTCCTTGCAA 420 consensus_4666#2 ------------------------------------------------------------ consensus_4666#1 ------------------------------------------------ATGTTAGCACCG 12 consensus_4666#0 TCCAGAATGAGCTCAGTTTCTTTGGATGTCATGGCTCCAGCTCTGAGACAAATTATTCAC 480 consensus_4666#2 ------------------------------------------------------------ consensus_4666#1 CCGTGAAAGGG---AGTTTC---GGCTATCTTGATCCTGAGTACTACAGGAGGCAGAAGC 66 consensus_4666#0 TTATACCCTCTTCAACTACTCTAGCTTCTCCTTTTTTTCCCCTTAGTGTTGTCTGCTTAT 540 consensus_4666#2 ------------------------------------------------------------ consensus_4666#1 TGAC--------CGACAAGTCAGACGTGTACTCGTTC-------GGTGTGGTCTTGCTAG 111 consensus_4666#0 CTGTATCTCTGTGCAATTCATGGCCCTTTGATACCATTTTAGCCTCCAATTTTCATTGGG 600 consensus_4666#2 ------------------------------------------------------------ consensus_4666#1 AGGTGA-TCTGCGCAAGGCCAG--TCATCGACCCGAC----GCTTCCAAGAGACAT---G 161 consensus_4666#0 ATTCATCATGGATAGTA--CCTTTAGAAAGCTTAAATTAGTTCTAGCTCTTGTTGGGATC 658 consensus_4666#2 ------------------------------------------------------------ consensus_4666#1 ATCAACCTTGCAGAGTGGGCTATTAAGTGGCAAAAGAGAGG---AGAGCTTGATCAGATC 218 consensus_4666#0 ATCGACAAGAGGATCGCCGGGACAATCAGGCCAGAATCGCTGAGGAAGTACGGGGAGACG 718 consensus_4666#2 ------------------------------------------------------------ consensus_4666#1 ATCGACAAGAGGATCGCCGGGACAATCAGGCCAGAATCGCTGAGGAAGTACGGGGAGACG 278 consensus_4666#0 GTGGAGAAATGCCTCGCGGAGTACGGCGTCGAACGGCCTACGATGGGAGATGTCC-TGTG 777 consensus_4666#2 -------------------------------------CTACGATGGGAGATGTCCCTGTG 23 consensus_4666#1 GTGGAGAAATGCCTCGCGGAGTACGGCGTCGAACGGCCTACGATGGGAGATGTCC-TGTG 337 ****************** **** consensus_4666#0 GAACCTGGAGTTTGTGCTCC-AGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATA 836 consensus_4666#2 GANCCTGGAGTTTGTGCTCCCAGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATA 83 consensus_4666#1 GAACCTGGAGTTCGTGCTCC-AGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATA 396 ** ********* ******* *************************************** consensus_4666#0 GCATGAATCAGATCTCTGAACTCCCTTCAAATGCCCAGAGGATAAGCTCCCTGGAGATCA 896 consensus_4666#2 GCATGAATCAGATCTCTGAACTCCCTTCAAATNCCCAGAGGATAAGCTCCCTGGAGATCA 143 consensus_4666#1 GCATGAATCAGATCTCTGAACTCCCTTCAAATGCCCAGAGGATAAGCTCCCTGGAGATCA 456 ******************************** *************************** consensus_4666#0 GCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCT 956 consensus_4666#2 GCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCT 203 consensus_4666#1 GCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCT 516 ************************************************************ consensus_4666#0 TCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCA 1016 consensus_4666#2 TCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCA 263 consensus_4666#1 TCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCA 576 ************************************************************ consensus_4666#0 CTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGA 1076 consensus_4666#2 CTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGA 323 consensus_4666#1 CTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGA 636 ************************************************************ consensus_4666#0 TTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGA 1136 consensus_4666#2 TTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGA 383 consensus_4666#1 TTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGA 696 ************************************************************ consensus_4666#0 ATTTTTGTTACCCCTATACTGTACATACATATGTTTCTTATTTATCTTAAAGCCTGAAAA 1196 consensus_4666#2 ATTTTTGTTAAAAAAAAAAAAAAAAAAAAAA----------------------------- 414 consensus_4666#1 ATTTTTGTTACCCCTATACTGTACATACATATGTTTCGTATTTATCTTAAAGCCTGAAAA 756 ********** * * * * * * * consensus_4666#0 T-------------------- 1197 consensus_4666#2 --------------------- consensus_4666#1 TGGATTATGTTAAAAAAAGGA 777 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||