cluster # 4680

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Oryza sativa
cluster # 4680 cluster # 4680 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4680#0 length = 806 sequences # 2

consensus_4680#1 length = 506 sequences # 1

consensusID : consensus_4680#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 806
fasta sequence

                              [TCTTCCCCTTCATCACAGTCTAGTACTTCTTGCACCTGCATCATCTGCATTGGCAGCAGTAAACTAAGGGTGCGTTCGTTCTGAGAGATTGGCTGACGACACCATTGCAAGCTCGGTAGGAGTAGCAGTAGCTCTGTTGTTCGGTTGTTCTGCTCAATGGCCGCTCGAGCACTGTCTGCTGCTGCCGCCGCCGCCGGTCGCCGGATGGCCGGACAGACTGGC-TTCCCTCTTCTTGCCTCCTGCAGGAGAGGAGATCAAGCTCATCAGAATTACTCGATTAGCGCACAGGCCCAGCCGGAGGAGGAGCAGAAGGCCATCCACGACGGCGGCGGCGCCGCCGGAGCGCAGGTGGAGGCGGCGCTGAACCGCAAGAACGTGGAGGTGCACCCGGAGGAGGAGACGGTGGAGGACGCGTGGGTGCCCGACCACGAGACCGGCGTCTTTGTCCCCGCCGACGAGGCCGCCGTCTCCGGCACCGAAAACCACGACCACTGCGGAGCGGCGGCGGCGGCGGCCGGCGGCTCGCCGTCGGTGCTTGACCAGGCGGTGTTCGTCCGCGAGGAGGACATGGAGGACGTCGANAGGCCGGCCGTCGACATGGCCGCTGCCAATCACAAGCCCAAATGAGCATCAACTCAGCAGTAGCAGCAATAACCAATAAAGCCAAATAATGCCTTCTGAAATCTCATGTACAACTAGTACTAGAAAATTTCCAGTGAAAATCTTGCGTCGTTGGTTGTATGAATCTTGTTATCTACAGTGATCAATCGGATAATCTGTTCTTTGATGAAAAAAAAAAAAAAAAA]

[+] EMBL C74252               [TCTTCCCCTTCATCACAGTCTAGTACTTCTTGCACCTGCATCATCTGCATTGGCAGCAGTAAACTAAGGGTGCGTTCGTTCTGAGAGATTGGCTGACGACACCATTGCAAGCTCGGTAGGAGTAGCAGTAGCTCTGTTGTTCGGTTGTTCTGCTCAATGGCCGCTCGAGCACTGTCTGCTGCTGCCGCCGCCGCCGGTCGCCGGATGGCCGGACAGACTGGC TTCCCTCTTCTTGCCTCCTGCAGGAGAGGAGATCAAGCTCATCAGAATTACTCGATTAGCGCACAGGCCCAGCCGGAGGAGGAGCAGAAGGCCATCCACGACGGCGGCGGCGCCGCCGGAGCGCAGGTGGAGGCGGCGCTGAACCGCAAGAACGTGGAGGTGCACCCGGAGGAGGAGACGGTGGAGGACGCGTGGGTGCCCGACCACGAGACCGGCGTCTTTGTCCCCGCCGACGAGGCCGCCGTCTCCGGCACCGAAAACCACGACCACTGCGGAGCGGCGGCGGCG                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU082409             [                                                                                                                         GTACCAGTAGCTCTGTTGTCGGGTTGTTCTGCTCAATGGCCGCTCGAGCACTGTTTGCTGCTGCCGCCGCCGCCGGTCGCCGGATGGCCGGACAGACTGGCTTTCCCTCTTCTTGCCTCCTGCAGGAGAGGAGATCAAGCTCATCAGAATTACTCGATTAGCGCACAGGCCCAGCCGGAGGAGGAGCAGAAGGCCATCCACGACGGCGGCGGCGCCGCCGGAGCGCAGGTGGAGGCGGCGCTGAACCGCAAGAACGTGGAGGTGCACCCGGAGGAGGAGACGGTGGAGGACGCGTGGGTGCCCGACCACGAGACCGGCGTCTTTGTCCCCGCCGACGAGGCCGCCGTNTCCGGCACCGAAAACCACGACCACTGCGGANCGGCGGCGGCGGCGGCCGGCGGCTCGCCGTCGGTGCTTGACCAGGCGGTGTTCGTCCGCGAGGAGGACATGGAGGACGTCGANAGGCCGGCCGTCGACATGGCCGCTGCCAATCACAAGCCCAAATGAGCATCAACTCAGCAGTAGCAGCAATAACCAATAAAGCCAAATAATGCCTTCTGAAATCTCATGTACAACTAGTACTAGAAAATTTCCAGTGAAAATCTTGCGTCGTTGGTTGTATGAATCTTGTTATCTACAGTGATCAATCGGATAATCTGTTCTTTGATGAAAAAAAAAAAAAAAAA]




>consensus_4680#0
TCTTCCCCTTCATCACAGTCTAGTACTTCTTGCACCTGCATCATCTGCATTGGCAGCAGT
AAACTAAGGGTGCGTTCGTTCTGAGAGATTGGCTGACGACACCATTGCAAGCTCGGTAGG
AGTAGCAGTAGCTCTGTTGTTCGGTTGTTCTGCTCAATGGCCGCTCGAGCACTGTCTGCT
GCTGCCGCCGCCGCCGGTCGCCGGATGGCCGGACAGACTGGCTTCCCTCTTCTTGCCTCC
TGCAGGAGAGGAGATCAAGCTCATCAGAATTACTCGATTAGCGCACAGGCCCAGCCGGAG
GAGGAGCAGAAGGCCATCCACGACGGCGGCGGCGCCGCCGGAGCGCAGGTGGAGGCGGCG
CTGAACCGCAAGAACGTGGAGGTGCACCCGGAGGAGGAGACGGTGGAGGACGCGTGGGTG
CCCGACCACGAGACCGGCGTCTTTGTCCCCGCCGACGAGGCCGCCGTCTCCGGCACCGAA
AACCACGACCACTGCGGAGCGGCGGCGGCGGCGGCCGGCGGCTCGCCGTCGGTGCTTGAC
CAGGCGGTGTTCGTCCGCGAGGAGGACATGGAGGACGTCGANAGGCCGGCCGTCGACATG
GCCGCTGCCAATCACAAGCCCAAATGAGCATCAACTCAGCAGTAGCAGCAATAACCAATA
AAGCCAAATAATGCCTTCTGAAATCTCATGTACAACTAGTACTAGAAAATTTCCAGTGAA
AATCTTGCGTCGTTGGTTGTATGAATCTTGTTATCTACAGTGATCAATCGGATAATCTGT
TCTTTGATGAAAAAAAAAAAAAAAAA

consensusID : consensus_4680#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [TTTTTTTTTTAAAGCCAAATAATGGCTTCTGAAATCTCATGTACAACTAGTACTAGAAAATTTCCAGTGAAAATCTTGCGTCGTTGGTTGTATGAATCTTGTTATCTACAGGATCAATCGGATAATCTGTTCTTTGATGAATCTTGTTGTGGTTTTATCGGATGGAATTTGCTGGGATGTTTGAATTCGTGCACGACGCCGTCGATCTCGATGAGGCTGCAGCCGGGGACCTTGTCGATCTCGTTCCTCCTCATCTGCCCCCTCACCTTCACCGCCTCACCGGTGCCGGCCATTCGACGCGTACGTGTTCGACATGAGCACGTAGTCGCCGGCGTCCGCGTCGGCCACGCGCCGTCGCATCACCCGCTCGGCGCGCTCGACGTCGCCGTGCGCGCGGCATGCGGCGAGCAGCGAGCTCCAGATGAGCGCGTCGGAGTGTACTGGCATTGCCGCGATGAGCTCCTCTGGCCTTGTCTAGTCTCCCGGGCGGNCGAGCATGTCTGACG]

[-] EMBL BM421678             [TTTTTTTTTTAAAGCCAAATAATGGCTTCTGAAATCTCATGTACAACTAGTACTAGAAAATTTCCAGTGAAAATCTTGCGTCGTTGGTTGTATGAATCTTGTTATCTACAGGATCAATCGGATAATCTGTTCTTTGATGAATCTTGTTGTGGTTTTATCGGATGGAATTTGCTGGGATGTTTGAATTCGTGCACGACGCCGTCGATCTCGATGAGGCTGCAGCCGGGGACCTTGTCGATCTCGTTCCTCCTCATCTGCCCCCTCACCTTCACCGCCTCACCGGTGCCGGCCATTCGACGCGTACGTGTTCGACATGAGCACGTAGTCGCCGGCGTCCGCGTCGGCCACGCGCCGTCGCATCACCCGCTCGGCGCGCTCGACGTCGCCGTGCGCGCGGCATGCGGCGAGCAGCGAGCTCCAGATGAGCGCGTCGGAGTGTACTGGCATTGCCGCGATGAGCTCCTCTGGCCTTGTCTAGTCTCCCGGGCGGNCGAGCATGTCTGACG]




>consensus_4680#1
TTTTTTTTTTAAAGCCAAATAATGGCTTCTGAAATCTCATGTACAACTAGTACTAGAAAA
TTTCCAGTGAAAATCTTGCGTCGTTGGTTGTATGAATCTTGTTATCTACAGGATCAATCG
GATAATCTGTTCTTTGATGAATCTTGTTGTGGTTTTATCGGATGGAATTTGCTGGGATGT
TTGAATTCGTGCACGACGCCGTCGATCTCGATGAGGCTGCAGCCGGGGACCTTGTCGATC
TCGTTCCTCCTCATCTGCCCCCTCACCTTCACCGCCTCACCGGTGCCGGCCATTCGACGC
GTACGTGTTCGACATGAGCACGTAGTCGCCGGCGTCCGCGTCGGCCACGCGCCGTCGCAT
CACCCGCTCGGCGCGCTCGACGTCGCCGTGCGCGCGGCATGCGGCGAGCAGCGAGCTCCA
GATGAGCGCGTCGGAGTGTACTGGCATTGCCGCGATGAGCTCCTCTGGCCTTGTCTAGTC
TCCCGGGCGGNCGAGCATGTCTGACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4680#0      TCTTCCCCTTCATCACAGTCTAGTACTTCTTGCACCTGCATCATCTGCATTGGCAGCAGT 60
consensus_4680#1      ------------------------------------------------------------
                                                                                  

consensus_4680#0      AAACTAAGGGTGCGTTCGTTCTGAGAGATTGGCTGACGACACCATTGCAAGCTCG-GTAG 119
consensus_4680#1      --------------TTTTTTTTTTAAAGCCAAATAATGGCTTC--TGAAATCTCATGTAC 44
                                    **  ** *   *       * * * *  *  ** ** ***  *** 

consensus_4680#0      GAGTAGCAGTAGCTCTGTTGTT-CGGTTGTTCTGC-TCAATGGCCGCTCGAGCACTGTCT 177
consensus_4680#1      AACTAGTACTAGAAAATTTCCAGTGAAAATCTTGCGTCGTTGGTTGTATGAATCTTGTTA 104
                       * *** * ***     **     *    *  *** **  ***  *   **    ***  

consensus_4680#0      GCTGCTGCCGCCGCCGCCGGTCGCCGGATGGCCGGACAGACTGGCTTCCCTCTTCTTGCC 237
consensus_4680#1      TCTACAGGATCAATCG--GATAATCTGTTCTTTGATGAATCTTGTTGTGGTTTTATCGGA 162
                       ** * *   *   **  * *   * * *    *   *  ** * *    * ** * *  

consensus_4680#0      TCCTGCAGGAGAGGA-GATCAAGCTCAT-CAGAATTAC-TCGATTAGCGCACAGGCCCAG 294
consensus_4680#1      TGGAATTTGCTGGGATGTTTGAATTCGTGCACGACGCCGTCGATCTCGATGAGGCTGCAG 222
                      *       *   *** * *  *  ** * **  *   * *****         *   ***

consensus_4680#0      CCGGAGGAGGAGCAGAAGGCCATCCACGACGGCGGCGGCGCCGCCGGAGCGCAGGTGGAG 354
consensus_4680#1      CCGGGGACCTTGTCGATCTCGTTCCTCCTCATCTGCCCCCTCACCTTCACC---GCCTCA 279
                      **** *     *  **   *  *** *  *  * **  *  * **    *    *     

consensus_4680#0      GCGGCGCTGAACCGCAAGAACGTGGAGGTGCACCCGGAGGAGG-AGACGGTGGAGGACGC 413
consensus_4680#1      CCGGTGCCGGCCATTCGACGCGTACGTGTTCGACATGAGCACGTAGTCGCCGGCGTCCGC 339
                       *** ** *  *        ***    ** *  *  *** * * ** **  ** *  ***

consensus_4680#0      GTGGGTGCCCGACCACGAGACCGGCGTCTTTGTCCCCGCCGACGAGGCCGCCGTCTCCGG 473
consensus_4680#1      GTCGGCCACGCGCCGTCGCATCACCCGCTCGGCGCGC-TCGACGTCGCCGT-GCGCGCGG 397
                      ** **   *   **     * *  *  **  *  * *  *****  ****  *    ***

consensus_4680#0      CA--CCGAAAACCACGACCACTGCGGAGCGGCGGCGGCGGCGGCCGGCGGCTCGCCGTCG 531
consensus_4680#1      CATGCGGCGAGCAGCGAGCTCCAGATGAGCGCGTCGGAGTGTACTGGCA--TTGCCGCGA 455
                      **  * *  * *  *** * *         *** *** *    * ***   * ****   

consensus_4680#0      GTGCTTGACCAGGCGGTGTTC-GTCCGCGAGGAGGACATGGAGGACGTCGANAGGCCGGC 590
consensus_4680#1      TGAGCTCCTCTGGCCTTGTCTAGTCTCCCGGGCGGNC---GAGCATGTCTGACG------ 506
                           *   * ***  ***   ***  *  ** ** *   *** * ***    *      

consensus_4680#0      CGTCGACATGGCCGCTGCCAATCACAAGCCCAAATGAGCATCAACTCAGCAGTAGCAGCA 650
consensus_4680#1      ------------------------------------------------------------
                                                                                  

consensus_4680#0      ATAACCAATAAAGCCAAATAATGCCTTCTGAAATCTCATGTACAACTAGTACTAGAAAAT 710
consensus_4680#1      ------------------------------------------------------------
                                                                                  

consensus_4680#0      TTCCAGTGAAAATCTTGCGTCGTTGGTTGTATGAATCTTGTTATCTACAGTGATCAATCG 770
consensus_4680#1      ------------------------------------------------------------
                                                                                  

consensus_4680#0      GATAATCTGTTCTTTGATGAAAAAAAAAAAAAAAAA 806
consensus_4680#1      ------------------------------------