These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4680#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 806 fasta sequence [TCTTCCCCTTCATCACAGTCTAGTACTTCTTGCACCTGCATCATCTGCATTGGCAGCAGTAAACTAAGGGTGCGTTCGTTCTGAGAGATTGGCTGACGACACCATTGCAAGCTCGGTAGGAGTAGCAGTAGCTCTGTTGTTCGGTTGTTCTGCTCAATGGCCGCTCGAGCACTGTCTGCTGCTGCCGCCGCCGCCGGTCGCCGGATGGCCGGACAGACTGGC-TTCCCTCTTCTTGCCTCCTGCAGGAGAGGAGATCAAGCTCATCAGAATTACTCGATTAGCGCACAGGCCCAGCCGGAGGAGGAGCAGAAGGCCATCCACGACGGCGGCGGCGCCGCCGGAGCGCAGGTGGAGGCGGCGCTGAACCGCAAGAACGTGGAGGTGCACCCGGAGGAGGAGACGGTGGAGGACGCGTGGGTGCCCGACCACGAGACCGGCGTCTTTGTCCCCGCCGACGAGGCCGCCGTCTCCGGCACCGAAAACCACGACCACTGCGGAGCGGCGGCGGCGGCGGCCGGCGGCTCGCCGTCGGTGCTTGACCAGGCGGTGTTCGTCCGCGAGGAGGACATGGAGGACGTCGANAGGCCGGCCGTCGACATGGCCGCTGCCAATCACAAGCCCAAATGAGCATCAACTCAGCAGTAGCAGCAATAACCAATAAAGCCAAATAATGCCTTCTGAAATCTCATGTACAACTAGTACTAGAAAATTTCCAGTGAAAATCTTGCGTCGTTGGTTGTATGAATCTTGTTATCTACAGTGATCAATCGGATAATCTGTTCTTTGATGAAAAAAAAAAAAAAAAA] [+] EMBL C74252 [TCTTCCCCTTCATCACAGTCTAGTACTTCTTGCACCTGCATCATCTGCATTGGCAGCAGTAAACTAAGGGTGCGTTCGTTCTGAGAGATTGGCTGACGACACCATTGCAAGCTCGGTAGGAGTAGCAGTAGCTCTGTTGTTCGGTTGTTCTGCTCAATGGCCGCTCGAGCACTGTCTGCTGCTGCCGCCGCCGCCGGTCGCCGGATGGCCGGACAGACTGGC TTCCCTCTTCTTGCCTCCTGCAGGAGAGGAGATCAAGCTCATCAGAATTACTCGATTAGCGCACAGGCCCAGCCGGAGGAGGAGCAGAAGGCCATCCACGACGGCGGCGGCGCCGCCGGAGCGCAGGTGGAGGCGGCGCTGAACCGCAAGAACGTGGAGGTGCACCCGGAGGAGGAGACGGTGGAGGACGCGTGGGTGCCCGACCACGAGACCGGCGTCTTTGTCCCCGCCGACGAGGCCGCCGTCTCCGGCACCGAAAACCACGACCACTGCGGAGCGGCGGCGGCG ] [+] EMBL AU082409 [ GTACCAGTAGCTCTGTTGTCGGGTTGTTCTGCTCAATGGCCGCTCGAGCACTGTTTGCTGCTGCCGCCGCCGCCGGTCGCCGGATGGCCGGACAGACTGGCTTTCCCTCTTCTTGCCTCCTGCAGGAGAGGAGATCAAGCTCATCAGAATTACTCGATTAGCGCACAGGCCCAGCCGGAGGAGGAGCAGAAGGCCATCCACGACGGCGGCGGCGCCGCCGGAGCGCAGGTGGAGGCGGCGCTGAACCGCAAGAACGTGGAGGTGCACCCGGAGGAGGAGACGGTGGAGGACGCGTGGGTGCCCGACCACGAGACCGGCGTCTTTGTCCCCGCCGACGAGGCCGCCGTNTCCGGCACCGAAAACCACGACCACTGCGGANCGGCGGCGGCGGCGGCCGGCGGCTCGCCGTCGGTGCTTGACCAGGCGGTGTTCGTCCGCGAGGAGGACATGGAGGACGTCGANAGGCCGGCCGTCGACATGGCCGCTGCCAATCACAAGCCCAAATGAGCATCAACTCAGCAGTAGCAGCAATAACCAATAAAGCCAAATAATGCCTTCTGAAATCTCATGTACAACTAGTACTAGAAAATTTCCAGTGAAAATCTTGCGTCGTTGGTTGTATGAATCTTGTTATCTACAGTGATCAATCGGATAATCTGTTCTTTGATGAAAAAAAAAAAAAAAAA] consensusID : consensus_4680#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [TTTTTTTTTTAAAGCCAAATAATGGCTTCTGAAATCTCATGTACAACTAGTACTAGAAAATTTCCAGTGAAAATCTTGCGTCGTTGGTTGTATGAATCTTGTTATCTACAGGATCAATCGGATAATCTGTTCTTTGATGAATCTTGTTGTGGTTTTATCGGATGGAATTTGCTGGGATGTTTGAATTCGTGCACGACGCCGTCGATCTCGATGAGGCTGCAGCCGGGGACCTTGTCGATCTCGTTCCTCCTCATCTGCCCCCTCACCTTCACCGCCTCACCGGTGCCGGCCATTCGACGCGTACGTGTTCGACATGAGCACGTAGTCGCCGGCGTCCGCGTCGGCCACGCGCCGTCGCATCACCCGCTCGGCGCGCTCGACGTCGCCGTGCGCGCGGCATGCGGCGAGCAGCGAGCTCCAGATGAGCGCGTCGGAGTGTACTGGCATTGCCGCGATGAGCTCCTCTGGCCTTGTCTAGTCTCCCGGGCGGNCGAGCATGTCTGACG] [-] EMBL BM421678 [TTTTTTTTTTAAAGCCAAATAATGGCTTCTGAAATCTCATGTACAACTAGTACTAGAAAATTTCCAGTGAAAATCTTGCGTCGTTGGTTGTATGAATCTTGTTATCTACAGGATCAATCGGATAATCTGTTCTTTGATGAATCTTGTTGTGGTTTTATCGGATGGAATTTGCTGGGATGTTTGAATTCGTGCACGACGCCGTCGATCTCGATGAGGCTGCAGCCGGGGACCTTGTCGATCTCGTTCCTCCTCATCTGCCCCCTCACCTTCACCGCCTCACCGGTGCCGGCCATTCGACGCGTACGTGTTCGACATGAGCACGTAGTCGCCGGCGTCCGCGTCGGCCACGCGCCGTCGCATCACCCGCTCGGCGCGCTCGACGTCGCCGTGCGCGCGGCATGCGGCGAGCAGCGAGCTCCAGATGAGCGCGTCGGAGTGTACTGGCATTGCCGCGATGAGCTCCTCTGGCCTTGTCTAGTCTCCCGGGCGGNCGAGCATGTCTGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4680#0 TCTTCCCCTTCATCACAGTCTAGTACTTCTTGCACCTGCATCATCTGCATTGGCAGCAGT 60 consensus_4680#1 ------------------------------------------------------------ consensus_4680#0 AAACTAAGGGTGCGTTCGTTCTGAGAGATTGGCTGACGACACCATTGCAAGCTCG-GTAG 119 consensus_4680#1 --------------TTTTTTTTTTAAAGCCAAATAATGGCTTC--TGAAATCTCATGTAC 44 ** ** * * * * * * * ** ** *** *** consensus_4680#0 GAGTAGCAGTAGCTCTGTTGTT-CGGTTGTTCTGC-TCAATGGCCGCTCGAGCACTGTCT 177 consensus_4680#1 AACTAGTACTAGAAAATTTCCAGTGAAAATCTTGCGTCGTTGGTTGTATGAATCTTGTTA 104 * *** * *** ** * * *** ** *** * ** *** consensus_4680#0 GCTGCTGCCGCCGCCGCCGGTCGCCGGATGGCCGGACAGACTGGCTTCCCTCTTCTTGCC 237 consensus_4680#1 TCTACAGGATCAATCG--GATAATCTGTTCTTTGATGAATCTTGTTGTGGTTTTATCGGA 162 ** * * * ** * * * * * * * ** * * * ** * * consensus_4680#0 TCCTGCAGGAGAGGA-GATCAAGCTCAT-CAGAATTAC-TCGATTAGCGCACAGGCCCAG 294 consensus_4680#1 TGGAATTTGCTGGGATGTTTGAATTCGTGCACGACGCCGTCGATCTCGATGAGGCTGCAG 222 * * *** * * * ** * ** * * ***** * *** consensus_4680#0 CCGGAGGAGGAGCAGAAGGCCATCCACGACGGCGGCGGCGCCGCCGGAGCGCAGGTGGAG 354 consensus_4680#1 CCGGGGACCTTGTCGATCTCGTTCCTCCTCATCTGCCCCCTCACCTTCACC---GCCTCA 279 **** * * ** * *** * * * ** * * ** * * consensus_4680#0 GCGGCGCTGAACCGCAAGAACGTGGAGGTGCACCCGGAGGAGG-AGACGGTGGAGGACGC 413 consensus_4680#1 CCGGTGCCGGCCATTCGACGCGTACGTGTTCGACATGAGCACGTAGTCGCCGGCGTCCGC 339 *** ** * * *** ** * * *** * * ** ** ** * *** consensus_4680#0 GTGGGTGCCCGACCACGAGACCGGCGTCTTTGTCCCCGCCGACGAGGCCGCCGTCTCCGG 473 consensus_4680#1 GTCGGCCACGCGCCGTCGCATCACCCGCTCGGCGCGC-TCGACGTCGCCGT-GCGCGCGG 397 ** ** * ** * * * ** * * * ***** **** * *** consensus_4680#0 CA--CCGAAAACCACGACCACTGCGGAGCGGCGGCGGCGGCGGCCGGCGGCTCGCCGTCG 531 consensus_4680#1 CATGCGGCGAGCAGCGAGCTCCAGATGAGCGCGTCGGAGTGTACTGGCA--TTGCCGCGA 455 ** * * * * *** * * *** *** * * *** * **** consensus_4680#0 GTGCTTGACCAGGCGGTGTTC-GTCCGCGAGGAGGACATGGAGGACGTCGANAGGCCGGC 590 consensus_4680#1 TGAGCTCCTCTGGCCTTGTCTAGTCTCCCGGGCGGNC---GAGCATGTCTGACG------ 506 * * *** *** *** * ** ** * *** * *** * consensus_4680#0 CGTCGACATGGCCGCTGCCAATCACAAGCCCAAATGAGCATCAACTCAGCAGTAGCAGCA 650 consensus_4680#1 ------------------------------------------------------------ consensus_4680#0 ATAACCAATAAAGCCAAATAATGCCTTCTGAAATCTCATGTACAACTAGTACTAGAAAAT 710 consensus_4680#1 ------------------------------------------------------------ consensus_4680#0 TTCCAGTGAAAATCTTGCGTCGTTGGTTGTATGAATCTTGTTATCTACAGTGATCAATCG 770 consensus_4680#1 ------------------------------------------------------------ consensus_4680#0 GATAATCTGTTCTTTGATGAAAAAAAAAAAAAAAAA 806 consensus_4680#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||