These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2330 fasta sequence [TCTCGACCGCACCGGCCCCGCATGCCTGCCCACTGCCCAAATAAAGCGTCGTCGATCGACCGCGCGCGATCATGGCGATGGTCGTCGCGGGGAGCCATCGGCCGCCGCCGCCGCCGCAGTCGCTGCGGCTGGTCCCGCCACCGCCGCCGCAGCCTCCTCCTCCTCCTCTGACGTACAGGCACCACTGCAAGGTGTGCAAGAAGGGGTTCATGTGCGGTCGCGCGCTCGGCGGCCACATGAGGGCGCACGGCATCGGCGACGACAACGACACGATGGACGACGACGACGGCCGCGATGATGATCATTCGCTGTCACCGTGCGATGGTGGTGGCGAGCCGTCGGAGGCAGCCGGGAGCCCGACGACGACGACGACGAAACGTATGTACGCGCTGCGGACCAA-TCCCGGGCGGCCAAGGAACTGCAGGACATGCGAGAACTGCGGGAAGGAGTTCACGTCGTGGAAGACGTTGCTGGATCATGGCAGGTGCGGCCTTGACGAGGAGGACGGTCGCCTCGACGTCTCGCTCCGTTCGCCGCCGCTTCACGACGGTGGCGACGAAAACGACGGCGAGGAGGAGGAGGAGGGGGACGACCTCACACTGGCTGCGGGCGGGTGGTCGAAAGGGAAGCGCTCGCGCCGTGCTAAAGTGATGGCCGTCGGGACCGGCTCCGTGTCCGAGCTACAGCTGCCGGCTCCGTCTACCGAAGAGGAAGACCTCGCCAACTTTCTCGTGATGCTCTCTTCTTCTTCGTCATCATCGTCGCGTGTTGCACAGCCAGCCATCGTCGTCGACGACGCGGACCAAGAGTCCTGCGCATCAGGTAGCAAGGACGAGGAGAGGAACAGGTTCTTGGTGCCGCAGCCAATCTCGATGGCAGCCCCCATGATGGCTCAGATGACAGTGATCGCTCCGCAAGTGGTGCCACAGCACATCTCGACCGTGCCACGTGGCATGTTCGAGTGCAAGGCATGCAAGAAGGTGTTTACATCGCACCAGGCTCTTGGCGGGCACCGTGCCAGCCACAAGAAGGTGAAAGGATGCTTCGCCGCGAAGCTCGAGAGCAGCCGCAACGAGACTAGTCAGACTCAGACTCAGCAGCAACACGTCTCAGCCGCTCCTCATGACAATACCAGGGCCACCACCTCTCATGTCATCACCAGCGATATCAGCATGGATGCAAACACGATCGGTGCCAGTGCTGATGCTGACGGCAAGGCAGCGGCAAGCGGCGTTGGCGCAGGTGAAATTGTCCTCGCCGGAGCTTCGTCGACGGATATGGCCATGATGATGTCGGTCGAGGACTTCGCGCCGACACCGTTGGCGCCATCCGCCGTCTCACCGTTCAAGAAGAAGGGGAAGGTGCACGAGTGCTCCATCTGCCACCGGGTGTTCACGTCGGGGCAAGCGCTCGGCGGCCACAAGCGATGCCACTGGCTGACGTCGGGCGCAACGGACCCGCTCACGAAGCTCCAGCCCGTCGCCCAAGACCACGCCATGATGGCCGCCATGTGCCACCAGCTCACGCTCGGGCGCCCAATATTCGACCCTACCGACCAGCGGATACTAGACCTTAACGTGCCGACGAACCCACTGGCAGAAGCGGTCGCGGCCAGGCAGCAGCAGCAGCAGCAGGTCGCCGCTCTCAACGACGGCGCACTCTGCCTCAACGCGGCGGCGTCGGTGTACCTGCAGTCCTGGACAGGGCACAGCAACGGGAGCCACGTGAACAAGACCACCGCGACGAGCAGCCGCATCAACGACGCGGCCGGCGGCGTGACCACGGAGGACGATGAAGCGGACAGCACGAGCGCCAAGAGAGCCAAGATCGGCGACCTCAAGGACATGAAAGTGGCAGGGGAGTCGTTGCCCTGGCTGCAGGTTGGCATCGGAATTTCATCAGAGAGCAAAGAAAAGAACACTCAAGAGTGACCTGGTCATGACAAGGAGGTCATGCCGACTAATGAACTAAGAAATTAATTAATTAATTAATTAGTGCTAATCTAATCCATATATATATATACATATTGTAGGTGTACGTACTATATCAATGCTTTATGTGATCGGGATATATGTATGTGTATATACATCCAATGTAAGTATTTACAAGTAGGGTCAATTCATGTGTTCCTAAAGGTTTGAGGCAACATCTAGGGACGTATTGCTTGGGGGACTGTAAATTAATAGGCTAGCAAGCTTGATTCTAAAAGGTTTCCTTACTGTACGATTCTTTGAGGAGCCTTGCTTTTTATTTTTATTTTTTTCCTTTTATTTTTTCTATTTTGTAACTAACCGATTATTTAATTTGCTGCTTCCAAAATGTATATATGC] [+] EMBL AK107559 [TCTCGACCGCACCGGCCCCGCATGCCTGCCCACTGCCCAAATAAAGCGTCGTCGATCGACCGCGCGCGATCATGGCGATGGTCGTCGCGGGGAGCCATCGGCCGCCGCCGCCGCCGCAGTCGCTGCGGCTGGTCCCGCCACCGCCGCCGCAGCCTCCTCCTCCTCCTCTGACGTACAGGCACCACTGCAAGGTGTGCAAGAAGGGGTTCATGTGCGGTCGCGCGCTCGGCGGCCACATGAGGGCGCACGGCATCGGCGACGACAACGACACGATGGACGACGACGACGGCCGCGATGATGATCATTCGCTGTCACCGTGCGATGGTGGTGGCGAGCCGTCGGAGGCAGCCGGGAGCCCGACGACGACGACGACGAAACGTATGTACGCGCTGCGGACCAA TCCCGGGCGGCCAAGGAACTGCAGGACATGCGAGAACTGCGGGAAGGAGTTCACGTCGTGGAAGACGTTGCTGGATCATGGCAGGTGCGGCCTTGACGAGGAGGACGGTCGCCTCGACGTCTCGCTCCGTTCGCCGCCGCTTCACGACGGTGGCGACGAAAACGACGGCGAGGAGGAGGAGGAGGGGGACGACCTCACACTGGCTGCGGGCGGGTGGTCGAAAGGGAAGCGCTCGCGCCGTGCTAAAGTGATGGCCGTCGGGACCGGCTCCGTGTCCGAGCTACAGCTGCCGGCTCCGTCTACCGAAGAGGAAGACCTCGCCAACTTTCTCGTGATGCTCTCTTCTTCTTCGTCATCATCGTCGCGTGTTGCACAGCCAGCCATCGTCGTCGACGACGCGGACCAAGAGTCCTGCGCATCAGGTAGCAAGGACGAGGAGAGGAACAGGTTCTTGGTGCCGCAGCCAATCTCGATGGCAGCCCCCATGATGGCTCAGATGACAGTGATCGCTCCGCAAGTGGTGCCACAGCACATCTCGACCGTGCCACGTGGCATGTTCGAGTGCAAGGCATGCAAGAAGGTGTTTACATCGCACCAGGCTCTTGGCGGGCACCGTGCCAGCCACAAGAAGGTGAAAGGATGCTTCGCCGCGAAGCTCGAGAGCAGCCGCAACGAGACTAGTCAGACTCAGACTCAGCAGCAACACGTCTCAGCCGCTCCTCATGACAATACCAGGGCCACCACCTCTCATGTCATCACCAGCGATATCAGCATGGATGCAAACACGATCGGTGCCAGTGCTGATGCTGACGGCAAGGCAGCGGCAAGCGGCGTTGGCGCAGGTGAAATTGTCCTCGCCGGAGCTTCGTCGACGGATATGGCCATGATGATGTCGGTCGAGGACTTCGCGCCGACACCGTTGGCGCCATCCGCCGTCTCACCGTTCAAGAAGAAGGGGAAGGTGCACGAGTGCTCCATCTGCCACCGGGTGTTCACGTCGGGGCAAGCGCTCGGCGGCCACAAGCGATGCCACTGGCTGACGTCGGGCGCAACGGACCCGCTCACGAAGCTCCAGCCCGTCGCCCAAGACCACGCCATGATGGCCGCCATGTGCCACCAGCTCACGCTCGGGCGCCCAATATTCGACCCTACCGACCAGCGGATACTAGACCTTAACGTGCCGACGAACCCACTGGCAGAAGCGGTCGCGGCCAGGCAGCAGCAGCAGCAGCAGGTCGCCGCTCTCAACGACGGCGCACTCTGCCTCAACGCGGCGGCGTCGGTGTACCTGCAGTCCTGGACAGGGCACAGCAACGGGAGCCACGTGAACAAGACCACCGCGACGAGCAGCCGCATCAACGACGCGGCCGGCGGCGTGACCACGGAGGACGATGAAGCGGACAGCACGAGCGCCAAGAGAGCCAAGATCGGCGACCTCAAGGACATGAAAGTGGCAGGGGAGTCGTTGCCCTGGCTGCAGGTTGGCATCGGAATTTCATCAGAGAGCAAAGAAAAGAACACTCAAGAGTGACCTGGTCATGACAAGGAGGTCATGCCGACTAATGAACTAAGAAATTAATTAATTAATTAATTAGTGCTAATCTAATCCATATATATATATACATATTGTAGGTGTACGTACTATATCAATGCTTTATGTGATCGGGATATATGTATGTGTATATACATCCAATGTAAGTATTTACAAGTAGGGTCAATTCATGTGTTCCTAAAGGTTTGAGGCAACATCTAGGGACGTATTGCTTGGGGGACTGTAAATTAATAGGCTAGCAAGCTTGATTCTAAAAGGTTTCCTTACTGTACGATTCTTTGAGGAGCCTTGCTTTTTATTTTTATTTTTTTCCTTTTATTTTTTCTATTTTGTAACTAACCGATTATTTAATTTGCTGCTTCCAAAATGTATATATGC] [+] EMBL AU163542 [ ACCGGCCCCGCATGCCTGCCCACTGCCCAAATAAAGCGTCGTCGATCGACCGCGCGCGATCATGGCGATGGTCGTCGCGGGGAGCCATCGGCCGCCGCCGCCGCCGCAGTCGCTGCGGCTGGTCCCGCCACCGCCGCCGCAGCCTCCTCCTCCTCCTCTGACGTACAGGCACCACTGCAAGGTGTGCAAGAAGGGGTTCATGTGCGGTCGCGCGCTCGGCGGCCACATGAGGGCGCACGGCATCGGCGACGACAACGACACGATGGACGACGACGACGGCCGCGATGATGATCATTCGTTGTCAACGTGCGATGGTGGTTGCGAGCCGTCGGAGGAAGCCGGGAGCCCGACGACGACGACGACGAAACGTNTNTACGGGTTTCGGACCAATTCCCGGG GGCCAAGGAAnt ] consensusID : consensus_4689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [GACTAATGAACTAAGAAATTAATTAATTAATTAATTAATTAATTAATTAATTAATTAGTGCTAATCTAATCCATATATATATATATATACATATTGTAGGTGTACGTACTATATCAATGCTTTATGTGATCGGGATATATGTATGTGTATATACATCCAATGTAAGTATTTACAAGTAGGGTCAATTCATGTGTTCCTAAAGGTTTGAGGCAACATCTAGGGACGTATTGCTTGGAGGACTGTAAATTAATAGGCTAGCAAGCTTGATTCTAAAAGGTTTCCTTACTGTACGATTCTTTGAGGAGCCTTGCTTTTTATTTTTATTTTTTTCCTTTTATTTTTTCTATTTTGTAACTAACCGATTATTTAATTTGCTGCTTCCAAAATGTAT] [+] EMBL CA763819 [GACTAATGAACTAAGAAATTAATTAATTAATTAATTAATTAATTAATTAATTAATTAGTGCTAATCTAATCCATATATATATATATATACATATTGTAGGTGTACGTACTATATCAATGCTTTATGTGATCGGGATATATGTATGTGTATATACATCCAATGTAAGTATTTACAAGTAGGGTCAATTCATGTGTTCCTAAAGGTTTGAGGCAACATCTAGGGACGTATTGCTTGGAGGACTGTAAATTAATAGGCTAGCAAGCTTGATTCTAAAAGGTTTCCTTACTGTACGATTCTTTGAGGAGCCTTGCTTTTTATTTTTATTTTTTTCCTTTTATTTTTTCTATTTTGTAACTAACCGATTATTTAATTTGCTGCTTCCAAAATGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4689#0 TCTCGACCGCACCGGCCCCGCATGCCTGCCCACTGCCCAAATAAAGCGTCGTCGATCGAC 60 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 CGCGCGCGATCATGGCGATGGTCGTCGCGGGGAGCCATCGGCCGCCGCCGCCGCCGCAGT 120 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 CGCTGCGGCTGGTCCCGCCACCGCCGCCGCAGCCTCCTCCTCCTCCTCTGACGTACAGGC 180 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 ACCACTGCAAGGTGTGCAAGAAGGGGTTCATGTGCGGTCGCGCGCTCGGCGGCCACATGA 240 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 GGGCGCACGGCATCGGCGACGACAACGACACGATGGACGACGACGACGGCCGCGATGATG 300 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 ATCATTCGCTGTCACCGTGCGATGGTGGTGGCGAGCCGTCGGAGGCAGCCGGGAGCCCGA 360 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 CGACGACGACGACGAAACGTATGTACGCGCTGCGGACCAATCCCGGGCGGCCAAGGAACT 420 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 GCAGGACATGCGAGAACTGCGGGAAGGAGTTCACGTCGTGGAAGACGTTGCTGGATCATG 480 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 GCAGGTGCGGCCTTGACGAGGAGGACGGTCGCCTCGACGTCTCGCTCCGTTCGCCGCCGC 540 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 TTCACGACGGTGGCGACGAAAACGACGGCGAGGAGGAGGAGGAGGGGGACGACCTCACAC 600 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 TGGCTGCGGGCGGGTGGTCGAAAGGGAAGCGCTCGCGCCGTGCTAAAGTGATGGCCGTCG 660 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 GGACCGGCTCCGTGTCCGAGCTACAGCTGCCGGCTCCGTCTACCGAAGAGGAAGACCTCG 720 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 CCAACTTTCTCGTGATGCTCTCTTCTTCTTCGTCATCATCGTCGCGTGTTGCACAGCCAG 780 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 CCATCGTCGTCGACGACGCGGACCAAGAGTCCTGCGCATCAGGTAGCAAGGACGAGGAGA 840 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 GGAACAGGTTCTTGGTGCCGCAGCCAATCTCGATGGCAGCCCCCATGATGGCTCAGATGA 900 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 CAGTGATCGCTCCGCAAGTGGTGCCACAGCACATCTCGACCGTGCCACGTGGCATGTTCG 960 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 AGTGCAAGGCATGCAAGAAGGTGTTTACATCGCACCAGGCTCTTGGCGGGCACCGTGCCA 1020 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 GCCACAAGAAGGTGAAAGGATGCTTCGCCGCGAAGCTCGAGAGCAGCCGCAACGAGACTA 1080 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 GTCAGACTCAGACTCAGCAGCAACACGTCTCAGCCGCTCCTCATGACAATACCAGGGCCA 1140 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 CCACCTCTCATGTCATCACCAGCGATATCAGCATGGATGCAAACACGATCGGTGCCAGTG 1200 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 CTGATGCTGACGGCAAGGCAGCGGCAAGCGGCGTTGGCGCAGGTGAAATTGTCCTCGCCG 1260 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 GAGCTTCGTCGACGGATATGGCCATGATGATGTCGGTCGAGGACTTCGCGCCGACACCGT 1320 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 TGGCGCCATCCGCCGTCTCACCGTTCAAGAAGAAGGGGAAGGTGCACGAGTGCTCCATCT 1380 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 GCCACCGGGTGTTCACGTCGGGGCAAGCGCTCGGCGGCCACAAGCGATGCCACTGGCTGA 1440 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 CGTCGGGCGCAACGGACCCGCTCACGAAGCTCCAGCCCGTCGCCCAAGACCACGCCATGA 1500 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 TGGCCGCCATGTGCCACCAGCTCACGCTCGGGCGCCCAATATTCGACCCTACCGACCAGC 1560 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 GGATACTAGACCTTAACGTGCCGACGAACCCACTGGCAGAAGCGGTCGCGGCCAGGCAGC 1620 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 AGCAGCAGCAGCAGGTCGCCGCTCTCAACGACGGCGCACTCTGCCTCAACGCGGCGGCGT 1680 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 CGGTGTACCTGCAGTCCTGGACAGGGCACAGCAACGGGAGCCACGTGAACAAGACCACCG 1740 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 CGACGAGCAGCCGCATCAACGACGCGGCCGGCGGCGTGACCACGGAGGACGATGAAGCGG 1800 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 ACAGCACGAGCGCCAAGAGAGCCAAGATCGGCGACCTCAAGGACATGAAAGTGGCAGGGG 1860 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 AGTCGTTGCCCTGGCTGCAGGTTGGCATCGGAATTTCATCAGAGAGCAAAGAAAAGAACA 1920 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 CTCAAGAGTGACCTGGTCATGACAAGGAGGTCATGCCGACTAATGAACTAAGAAATTAAT 1980 consensus_4689#1 ----------GACTAATGA--ACTAAGAAATTA-----ATTAATTAATTAATTAATTAAT 43 ** * * ** * ** * * * **** ** *** ******* consensus_4689#0 TAATTAATTAATTAGTGCTAATCTAATCCATATATATATATA----CATATTGTAGGTGT 2036 consensus_4689#1 TAATTAATTAATTAGTGCTAATCTAATCCATATATATATATATATACATATTGTAGGTGT 103 ****************************************** ************** consensus_4689#0 ACGTACTATATCAATGCTTTATGTGATCGGGATATATGTATGTGTATATACATCCAATGT 2096 consensus_4689#1 ACGTACTATATCAATGCTTTATGTGATCGGGATATATGTATGTGTATATACATCCAATGT 163 ************************************************************ consensus_4689#0 AAGTATTTACAAGTAGGGTCAATTCATGTGTTCCTAAAGGTTTGAGGCAACATCTAGGGA 2156 consensus_4689#1 AAGTATTTACAAGTAGGGTCAATTCATGTGTTCCTAAAGGTTTGAGGCAACATCTAGGGA 223 ************************************************************ consensus_4689#0 CGTATTGCTTGGGGGACTGTAAATTAATAGGCTAGCAAGCTTGATTCTAAAAGGTTTCCT 2216 consensus_4689#1 CGTATTGCTTGGAGGACTGTAAATTAATAGGCTAGCAAGCTTGATTCTAAAAGGTTTCCT 283 ************ *********************************************** consensus_4689#0 TACTGTACGATTCTTTGAGGAGCCTTGCTTTTTATTTTTATTTTTTTCCTTTTATTTTTT 2276 consensus_4689#1 TACTGTACGATTCTTTGAGGAGCCTTGCTTTTTATTTTTATTTTTTTCCTTTTATTTTTT 343 ************************************************************ consensus_4689#0 CTATTTTGTAACTAACCGATTATTTAATTTGCTGCTTCCAAAATGTATATATGC 2330 consensus_4689#1 CTATTTTGTAACTAACCGATTATTTAATTTGCTGCTTCCAAAATGTAT------ 391 ************************************************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||