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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 614 fasta sequence
[GGAAAAGCCTTCCCTTGGATGTAACTCTTTCTGGTAAGGATCAAGGAAGAATTTGGATGTGGACTAGGTGTTTGAGATGCAATGGTAAGCCCACCCAGAGGGTTATAATCTCTTCCTCTGCGCGTAATCTGTCATTTGGGAAGTTCTTGGAACTCAGTTTCTCAACACATTCTGCTGCTAAGAAGCTATCAACATGTGGGCATTTGCTGCATAGGGACTGCCTACGCTTCTTTGGAATGGGACCCAAAGTTGCTATGTTCAGATACTCATCTGTTGAAATATATTCTGCCTTTAAGCCACCATTGACTTTGGAGTTTCATAACCCAAACAAAAAAGAATGCCGGGAAGTTGAATTTAATAATGTACTTCGAAAATGGAGGCTACTCTTATCTGAAGCCGAAAATAAAATACAAATCTTGAAATCAGGAGGCTCTGGTCAAGCCTTGGGGGAAAACACCAAAGTTTCAGTACATGAGGAATTATTTTTGGAAGTCAATAGGATACTTGCACAAGAAAAATATGAATTTGGGGTTTATCCGAAGACATTTGACTTCCTTGTAAAATCTGGGACTTGTGCTCACGAGATCCTTGGGTTGAACTGGCTACACCAGCTA]
[+] EMBL CF306646 [GGAAAAGCCTTCCCTTGGATGTAACTCTTTCTGGTAAGGATCAAGGAAGAATTTGGATGTGGACTAGGTGTTTGAGATGCAATGGTAAGCCCACCCAGAGGGTTATAATCTCTTCCTCTGCGCGTAATCTGTCATTTGGGAAGTTCTTGGAACTCAGTTTCTCAACACATTCTGCTGCTAAGAAGCTATCAACATGTGGGCATTTGCTGCATAGGGACTGCCTACGCTTCTTTGGAATGGGACCCAAAGTTGCTATGTTCAGATACTCATCTGTTGAAATATATTCTGCCTTTAAGCCACCATTGACTTTGGAGTTTCATAACCCAAACAAAAAAGAATGCCGGGAAGTTGAATTTAATAATGTACTTCGAAAATGGAGGCTACTCTTATCTGAAGCCGAAAATAAAATACAAATCTTGAAATCAGGAGGCTCTGGTCAAGCCTTGGGGGAAAACACCAAAGTTTCAGTACATGAGGAATTATTTTTGGAAGTCAATAGGATACTTGCACAAGAAAAATATGAATTTGGGGTTTATCCGAAGACATTTGACTTCCTTGTAAAATCTGGGACT ]
[+] EMBL CF306656 [ ACTCAGTTTCTCAACACATTCTGCTGCTAAGAAGCTATCAACATGTGGGCATTTGCTGCATAGGGACTGCCTACGCTTCTTTGGAATGGGACCCAAAGTTGCTATGTTCAGATACTCATCTGTTGAAATATATTCTGCCTTTAAGCCACCATTGACTTTGGAGTTTCATAACCCAAACAAAAAAGAATGCCGGGAAGTTGAATTTAATAATGTACTTCGAAAATGGAGGCTACTCTTATCTGAAGCCGAAAATAAAATACAAATCTTGAAATCAGGAGGCTCTGGTCAAGCCTTGGGGGAAAACACCAAAGTTTCAGTACATGAGGAATTATTTTTGGAAGTCAATAGGATACTTGCACAAGAAAAATATGAATTTGGGGTTTATCCGAAGACATTTGACTTCCTTGTAAAATCTGGGACTTGTGCTCACGAGATCCTTGGGTTGAACTGGCTACACCAGCTA]
consensusID : consensus_4700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence
[GGGGAAAACACCAAAGTTTCAGTACATGAGGAATTATTTTTGGAAGTCAATAGGATACTTGCACAAGAAAATTATGNTTTTGGGGTTTATCCGAAGACATTTGACTTTCCTGGTAAAANTCTGGGGTCTTTGTGNTCACGGAGATCCTTGGGGTTGTACTGGCTACACCAGCTACTTCTGNTTGGAAATTTACATTTTGGGATGTCCGGATTGCAACATATTCTTCANTACTTGTAAAGGCTAACGATGGCATCGTCAGATAGTACTATCCAGATAAAAACCACCAGGGGANCAAGC]
[+] EMBL D43268 [GGGGAAAACACCAAAGTTTCAGTACATGAGGAATTATTTTTGGAAGTCAATAGGATACTTGCACAAGAAAATTATGNTTTTGGGGTTTATCCGAAGACATTTGACTTTCCTGGTAAAANTCTGGGGTCTTTGTGNTCACGGAGATCCTTGGGGTTGTACTGGCTACACCAGCTACTTCTGNTTGGAAATTTACATTTTGGGATGTCCGGATTGCAACATATTCTTCANTACTTGTAAAGGCTAACGATGGCATCGTCAGATAGTACTATCCAGATAAAAACCACCAGGGGANCAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4700#0 GGAAAAGCCTTCCCTTGGATGTAACTCTTTCTGGTAAGGATCAAGGAAGAATTTGGATGT 60
consensus_4700#1 ------------------------------GGGGAAAACACCAAAGTTTCAGT-ACATGA 29
** ** * *** * * * ***
consensus_4700#0 GGACTAGGTGTTTGAGATGCAATGGTAAGCCCACCCA-GAGGGTTATAATCTCTTCCTCT 119
consensus_4700#1 GGAATTA-TTTTTGGAAGTCAATAGGATACTTGCACAAGAAAATTATGNTTTTGGGGTTT 88
*** * * **** * **** * * * * ** ** **** * * * *
consensus_4700#0 GCGCGTAATCTGTCATTTGGGAAGTTCTTGGAACTCAGTTTCTCAACACATTCTGCTGCT 179
consensus_4700#1 ATCCGAA----GACATTTG--ACTTTCCTGG---TAAAANTCTGGGGTCTTTGTGNTCAC 139
** * * ****** * *** *** * * *** * ** ** *
consensus_4700#0 AAGAAGCTATCAACATGTGGGCATTTGCTGCATAGGGACTGCCTACGCTTCTTTGGAATG 239
consensus_4700#1 GGAGATCCTTGGGGTTGT----ACTGGCTACA------CCAGCTACTTCTGNTTGGAAAT 189
* * * *** * * *** ** * **** * ******
consensus_4700#0 GGACCCAAAGTTGCTATGTTCAGATACTCATCTGTTGAAATATATTCTGCCTTTAAGCCA 299
consensus_4700#1 TTAC---ATTTTGGGATGTCCGGATTGCAACATATTC---TTCANTACTTGTAAAGGCTA 243
** * *** **** * *** * * ** * * * * * ** *
consensus_4700#0 CCATTGACTTTG--GAGTTTCATAACCCAAACAAAAAAGAATGCCGGGAAGTTGAATTTA 357
consensus_4700#1 ACGATGGCATCGTCAGATAGTACTATCCAGATAAAAACCA---CCAGGGGANCAAGC--- 297
* ** * * * * * * *** * ***** * ** ** *
consensus_4700#0 ATAATGTACTTCGAAAATGGAGGCTACTCTTATCTGAAGCCGAAAATAAAATACAAATCT 417
consensus_4700#1 ------------------------------------------------------------
consensus_4700#0 TGAAATCAGGAGGCTCTGGTCAAGCCTTGGGGGAAAACACCAAAGTTTCAGTACATGAGG 477
consensus_4700#1 ------------------------------------------------------------
consensus_4700#0 AATTATTTTTGGAAGTCAATAGGATACTTGCACAAGAAAAATATGAATTTGGGGTTTATC 537
consensus_4700#1 ------------------------------------------------------------
consensus_4700#0 CGAAGACATTTGACTTCCTTGTAAAATCTGGGACTTGTGCTCACGAGATCCTTGGGTTGA 597
consensus_4700#1 ------------------------------------------------------------
consensus_4700#0 ACTGGCTACACCAGCTA 614
consensus_4700#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||