These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 614 fasta sequence [GGAAAAGCCTTCCCTTGGATGTAACTCTTTCTGGTAAGGATCAAGGAAGAATTTGGATGTGGACTAGGTGTTTGAGATGCAATGGTAAGCCCACCCAGAGGGTTATAATCTCTTCCTCTGCGCGTAATCTGTCATTTGGGAAGTTCTTGGAACTCAGTTTCTCAACACATTCTGCTGCTAAGAAGCTATCAACATGTGGGCATTTGCTGCATAGGGACTGCCTACGCTTCTTTGGAATGGGACCCAAAGTTGCTATGTTCAGATACTCATCTGTTGAAATATATTCTGCCTTTAAGCCACCATTGACTTTGGAGTTTCATAACCCAAACAAAAAAGAATGCCGGGAAGTTGAATTTAATAATGTACTTCGAAAATGGAGGCTACTCTTATCTGAAGCCGAAAATAAAATACAAATCTTGAAATCAGGAGGCTCTGGTCAAGCCTTGGGGGAAAACACCAAAGTTTCAGTACATGAGGAATTATTTTTGGAAGTCAATAGGATACTTGCACAAGAAAAATATGAATTTGGGGTTTATCCGAAGACATTTGACTTCCTTGTAAAATCTGGGACTTGTGCTCACGAGATCCTTGGGTTGAACTGGCTACACCAGCTA] [+] EMBL CF306646 [GGAAAAGCCTTCCCTTGGATGTAACTCTTTCTGGTAAGGATCAAGGAAGAATTTGGATGTGGACTAGGTGTTTGAGATGCAATGGTAAGCCCACCCAGAGGGTTATAATCTCTTCCTCTGCGCGTAATCTGTCATTTGGGAAGTTCTTGGAACTCAGTTTCTCAACACATTCTGCTGCTAAGAAGCTATCAACATGTGGGCATTTGCTGCATAGGGACTGCCTACGCTTCTTTGGAATGGGACCCAAAGTTGCTATGTTCAGATACTCATCTGTTGAAATATATTCTGCCTTTAAGCCACCATTGACTTTGGAGTTTCATAACCCAAACAAAAAAGAATGCCGGGAAGTTGAATTTAATAATGTACTTCGAAAATGGAGGCTACTCTTATCTGAAGCCGAAAATAAAATACAAATCTTGAAATCAGGAGGCTCTGGTCAAGCCTTGGGGGAAAACACCAAAGTTTCAGTACATGAGGAATTATTTTTGGAAGTCAATAGGATACTTGCACAAGAAAAATATGAATTTGGGGTTTATCCGAAGACATTTGACTTCCTTGTAAAATCTGGGACT ] [+] EMBL CF306656 [ ACTCAGTTTCTCAACACATTCTGCTGCTAAGAAGCTATCAACATGTGGGCATTTGCTGCATAGGGACTGCCTACGCTTCTTTGGAATGGGACCCAAAGTTGCTATGTTCAGATACTCATCTGTTGAAATATATTCTGCCTTTAAGCCACCATTGACTTTGGAGTTTCATAACCCAAACAAAAAAGAATGCCGGGAAGTTGAATTTAATAATGTACTTCGAAAATGGAGGCTACTCTTATCTGAAGCCGAAAATAAAATACAAATCTTGAAATCAGGAGGCTCTGGTCAAGCCTTGGGGGAAAACACCAAAGTTTCAGTACATGAGGAATTATTTTTGGAAGTCAATAGGATACTTGCACAAGAAAAATATGAATTTGGGGTTTATCCGAAGACATTTGACTTCCTTGTAAAATCTGGGACTTGTGCTCACGAGATCCTTGGGTTGAACTGGCTACACCAGCTA] consensusID : consensus_4700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence [GGGGAAAACACCAAAGTTTCAGTACATGAGGAATTATTTTTGGAAGTCAATAGGATACTTGCACAAGAAAATTATGNTTTTGGGGTTTATCCGAAGACATTTGACTTTCCTGGTAAAANTCTGGGGTCTTTGTGNTCACGGAGATCCTTGGGGTTGTACTGGCTACACCAGCTACTTCTGNTTGGAAATTTACATTTTGGGATGTCCGGATTGCAACATATTCTTCANTACTTGTAAAGGCTAACGATGGCATCGTCAGATAGTACTATCCAGATAAAAACCACCAGGGGANCAAGC] [+] EMBL D43268 [GGGGAAAACACCAAAGTTTCAGTACATGAGGAATTATTTTTGGAAGTCAATAGGATACTTGCACAAGAAAATTATGNTTTTGGGGTTTATCCGAAGACATTTGACTTTCCTGGTAAAANTCTGGGGTCTTTGTGNTCACGGAGATCCTTGGGGTTGTACTGGCTACACCAGCTACTTCTGNTTGGAAATTTACATTTTGGGATGTCCGGATTGCAACATATTCTTCANTACTTGTAAAGGCTAACGATGGCATCGTCAGATAGTACTATCCAGATAAAAACCACCAGGGGANCAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4700#0 GGAAAAGCCTTCCCTTGGATGTAACTCTTTCTGGTAAGGATCAAGGAAGAATTTGGATGT 60 consensus_4700#1 ------------------------------GGGGAAAACACCAAAGTTTCAGT-ACATGA 29 ** ** * *** * * * *** consensus_4700#0 GGACTAGGTGTTTGAGATGCAATGGTAAGCCCACCCA-GAGGGTTATAATCTCTTCCTCT 119 consensus_4700#1 GGAATTA-TTTTTGGAAGTCAATAGGATACTTGCACAAGAAAATTATGNTTTTGGGGTTT 88 *** * * **** * **** * * * * ** ** **** * * * * consensus_4700#0 GCGCGTAATCTGTCATTTGGGAAGTTCTTGGAACTCAGTTTCTCAACACATTCTGCTGCT 179 consensus_4700#1 ATCCGAA----GACATTTG--ACTTTCCTGG---TAAAANTCTGGGGTCTTTGTGNTCAC 139 ** * * ****** * *** *** * * *** * ** ** * consensus_4700#0 AAGAAGCTATCAACATGTGGGCATTTGCTGCATAGGGACTGCCTACGCTTCTTTGGAATG 239 consensus_4700#1 GGAGATCCTTGGGGTTGT----ACTGGCTACA------CCAGCTACTTCTGNTTGGAAAT 189 * * * *** * * *** ** * **** * ****** consensus_4700#0 GGACCCAAAGTTGCTATGTTCAGATACTCATCTGTTGAAATATATTCTGCCTTTAAGCCA 299 consensus_4700#1 TTAC---ATTTTGGGATGTCCGGATTGCAACATATTC---TTCANTACTTGTAAAGGCTA 243 ** * *** **** * *** * * ** * * * * * ** * consensus_4700#0 CCATTGACTTTG--GAGTTTCATAACCCAAACAAAAAAGAATGCCGGGAAGTTGAATTTA 357 consensus_4700#1 ACGATGGCATCGTCAGATAGTACTATCCAGATAAAAACCA---CCAGGGGANCAAGC--- 297 * ** * * * * * * *** * ***** * ** ** * consensus_4700#0 ATAATGTACTTCGAAAATGGAGGCTACTCTTATCTGAAGCCGAAAATAAAATACAAATCT 417 consensus_4700#1 ------------------------------------------------------------ consensus_4700#0 TGAAATCAGGAGGCTCTGGTCAAGCCTTGGGGGAAAACACCAAAGTTTCAGTACATGAGG 477 consensus_4700#1 ------------------------------------------------------------ consensus_4700#0 AATTATTTTTGGAAGTCAATAGGATACTTGCACAAGAAAAATATGAATTTGGGGTTTATC 537 consensus_4700#1 ------------------------------------------------------------ consensus_4700#0 CGAAGACATTTGACTTCCTTGTAAAATCTGGGACTTGTGCTCACGAGATCCTTGGGTTGA 597 consensus_4700#1 ------------------------------------------------------------ consensus_4700#0 ACTGGCTACACCAGCTA 614 consensus_4700#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||