cluster # 4707

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Oryza sativa
cluster # 4707 cluster # 4707 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4707#0 length = 850 sequences # 2

consensus_4707#1 length = 337 sequences # 1

consensusID : consensus_4707#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 850
fasta sequence

                              [AGCGATTTTATGGGATGATTAATTGT-TATTGTTAAGCATACAAAACTGCTTTCCTTTTTCCATATTCCTTCATACATTAAGAACACCCAAACATCTCGGGGCCCACGTCCTCCAGAATGGATTTCGCCGTAATTTATGTCAATTTGATCATCAATCTACCACTACAACTTAAAAGTGTACCGACAAATAACTCTCTTCATCAGATCTAAACAGGTAACAATAATTCCAGTGAAAATGGGATGTACAGATAAATTCCTCAGTTGGAGCCAGAAATGTCGTTCAGAACTAACTGCATCTCAAGAACTACAGCGCGCCGCCTCCCTCTCACTCTGATGAGCCTCGGTATGTATCGATCTTGCCAACTCCAGGAGTAACAACTGCAAGTATGACAAGAGCCCCCAATAGCACCAGCAACATCCCCAACGAGTTCATAAACATAGCTTCTGTCGAGAAACGCCCGATCATTTTCGCGCTCTGCATGAAGATCGACTTCTCCAGAAGTCCCGAAACGCTTGTGGCGATGGCGAGAACGTAAAGGAAGAGGCCGAAGAAGACATGCCAGGGGAGCAGGGAGGCTCTTCCACTCCTAGATCCACCAGGGTACCAAAATGTATAAAATCCAGTAGCCCACTGCAAGCTGAAGAAGATGATGCAAGAAACGCCCAACCAGGAGTGAAGCGTATATAAGTGGTCGATCTGTCTCTCATCGTGGAACTTCCATACAGTCCAGAGCCCAATCAGACTCAGGAGCATGGCGAGGAACTGCAAGGCAAGGTGTACTAGCTTCTTCAGTTTCTTGGTTCCTGGCACTGTCTTGTAGGCCAAAATTGCTTCCCCATTCAGGACTACC]

[+] EMBL CB627303             [AGCGATTTTATGGGATGATTAATTGT TATTGTTAAGCATACAAAACTGCTTTCCTTTTTCCATATTCCTTCATACATTAAGAACACCCAAACATCTCGGGGCCCACGTCCTCCAGAATGGATTTCGCCGTAATTTATGTCAATTTGATCATCAATCTACCACTACAACTTAAAAGTGTACCGACAAATAACTCTCTTCATCAGATCTAAACAGGTAACAATAATTCCAGTGAAAATGGGATGTACAGATAAATTCCTCAGTTGGAGCCAGAAATGTCGTTCAGAACTAACTGCATCTCAAGAACTACAGCGCGCCGCCTCCCTCTCACTCTGATGAGCCTCGGTATGTATCGATCTTGCCAACTCCAGGAGTAACAACTGCAAGTATGACAAGAGCCCCCAATAGCACCAGCAACATCCCCAACGAGTTCATAAACATAGCTTCTGTCGAGAAACGCCCGATCATTTTCGCGCTCTGCATGAAGATCGACTTCTCCAGAAGTCCCGAAACGCTTGTGGCGATGGCGAGAACGTAAAGGAAGAGGCCGAAGAAGACATGCCAGGGGAGCAGGGAGGCTCTTCCACTCCTAGATCCACCAGGGTACCAAAATGTATAAAATCCAGTAGCCCACTGCAAGCTGAAGAAGATGATGCAAGAAACGCCCAACCAGGAGTGAAGCGTATATAAGTGGTCGATCTGTCTCTCATCGTGGAACTTCCATACAGTCCAGAGCCCAATCAGACTCAGGAGCATGGCGAGGAACTGCAAGGCAAGGTGTACTAGCTTCTTCAGTTTCTTGGTTCCTGGCACTGTCTTGTAGGCCAAAATTGCTTCCCCATTCAGGACTACC]
[+] EMBL CB627302             [           GGGATGATTACTTTTATATTGTTAAGCATACAAAACTGCTTTCCTTTTTCCATATTCCTTCATACATTAAGAACACCCAAACATCTCGGGGCCCACGTCCTCCAAAATGGATTTCGCCGTAATTTATGTCAATTTGATCATCAATCTACCACTACAACTTAAAAGTGTACCGACAAATAACTCTCTTCATCAGATCTAAACAGGTAACAATAATTCCAGTGAAAATGGGATGTACAGATAAATTCCTCAGTTGGAGCCAGAAATGTCGTTCAGAACTAACTGCATCTCAAGAACTACAGCGCGCCGCCTCCCTCTCACTCTGATGAGCCTCGGTATGTATCGATCTTGCCAACTCCAGGAGTAACAACTGCAAGTATGACAAGAGCCCCCAATAGCACCAGCAACATCCCCAACGAGTTCATAAACATAGCTTCTGTCGAGAAACGCCCGATCATTTTCGCGCTCTGCATGAAGATCGACTTCTCCAAAAGTCCCGAAACGCTTGTGGCGATGGCGAGAACGTAAAGGAAGAGGCCGAATAAGACATGCCAGGGGAGCAGGGAGGCTCTTCCACTCCTAGATCCACCAGGGTACCAAAATGTATAAAATCCAGTAGCCCACTGCAAGCTGAAGAAGATGATGCAAGAAACGCCCAACCAGGAGTGAAGCGTATATAAGTGGTCGATC                                                                                                                                                         ]




>consensus_4707#0
AGCGATTTTATGGGATGATTAATTGTTATTGTTAAGCATACAAAACTGCTTTCCTTTTTC
CATATTCCTTCATACATTAAGAACACCCAAACATCTCGGGGCCCACGTCCTCCAGAATGG
ATTTCGCCGTAATTTATGTCAATTTGATCATCAATCTACCACTACAACTTAAAAGTGTAC
CGACAAATAACTCTCTTCATCAGATCTAAACAGGTAACAATAATTCCAGTGAAAATGGGA
TGTACAGATAAATTCCTCAGTTGGAGCCAGAAATGTCGTTCAGAACTAACTGCATCTCAA
GAACTACAGCGCGCCGCCTCCCTCTCACTCTGATGAGCCTCGGTATGTATCGATCTTGCC
AACTCCAGGAGTAACAACTGCAAGTATGACAAGAGCCCCCAATAGCACCAGCAACATCCC
CAACGAGTTCATAAACATAGCTTCTGTCGAGAAACGCCCGATCATTTTCGCGCTCTGCAT
GAAGATCGACTTCTCCAGAAGTCCCGAAACGCTTGTGGCGATGGCGAGAACGTAAAGGAA
GAGGCCGAAGAAGACATGCCAGGGGAGCAGGGAGGCTCTTCCACTCCTAGATCCACCAGG
GTACCAAAATGTATAAAATCCAGTAGCCCACTGCAAGCTGAAGAAGATGATGCAAGAAAC
GCCCAACCAGGAGTGAAGCGTATATAAGTGGTCGATCTGTCTCTCATCGTGGAACTTCCA
TACAGTCCAGAGCCCAATCAGACTCAGGAGCATGGCGAGGAACTGCAAGGCAAGGTGTAC
TAGCTTCTTCAGTTTCTTGGTTCCTGGCACTGTCTTGTAGGCCAAAATTGCTTCCCCATT
CAGGACTACC

consensusID : consensus_4707#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [TTTTTTTTTTTTTTTGTACCGACAAATAACTCTCTTCATCAGATCTAAACAGGTAACAATAATTCCAGTGAAAATGGGATGTACAGATAAATTCCTCAGTTGGAGCCAGAAATGTCGTTCAGAACTAACTGCATCTCAAGAACTACAGCGCGCCGCCTCCCTCTCACTCTGATGAGCCTCGGTATGTATCGATCTTGCCAACTCCAGGAGTTACAACTGCAAGTATGACAAGAGCCCCCAATAGCACCAGCAACATCCCCAACGAGTTCATAACATAGCTTCTGTCGAGAACGCCGATCANTTTTGCGCCTGCATGAAGATGACTTCTCCAGAAGTC]

[-] EMBL AU029470             [TTTTTTTTTTTTTTTGTACCGACAAATAACTCTCTTCATCAGATCTAAACAGGTAACAATAATTCCAGTGAAAATGGGATGTACAGATAAATTCCTCAGTTGGAGCCAGAAATGTCGTTCAGAACTAACTGCATCTCAAGAACTACAGCGCGCCGCCTCCCTCTCACTCTGATGAGCCTCGGTATGTATCGATCTTGCCAACTCCAGGAGTTACAACTGCAAGTATGACAAGAGCCCCCAATAGCACCAGCAACATCCCCAACGAGTTCATAACATAGCTTCTGTCGAGAACGCCGATCANTTTTGCGCCTGCATGAAGATGACTTCTCCAGAAGTC]




>consensus_4707#1
TTTTTTTTTTTTTTTGTACCGACAAATAACTCTCTTCATCAGATCTAAACAGGTAACAAT
AATTCCAGTGAAAATGGGATGTACAGATAAATTCCTCAGTTGGAGCCAGAAATGTCGTTC
AGAACTAACTGCATCTCAAGAACTACAGCGCGCCGCCTCCCTCTCACTCTGATGAGCCTC
GGTATGTATCGATCTTGCCAACTCCAGGAGTTACAACTGCAAGTATGACAAGAGCCCCCA
ATAGCACCAGCAACATCCCCAACGAGTTCATAACATAGCTTCTGTCGAGAACGCCGATCA
NTTTTGCGCCTGCATGAAGATGACTTCTCCAGAAGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4707#0      AGCGATTTTATGGGATGATTAATTGTTATTGTTAAGCATACAAAACTGCTTTCCTTTTTC 60
consensus_4707#1      ------------------------------------------------------------
                                                                                  

consensus_4707#0      CATATTCCTTCATACATTAAGAACACCCAAACATCTCGGGGCCCACGTCCTCCAGAATGG 120
consensus_4707#1      ------------------------------------------------------------
                                                                                  

consensus_4707#0      ATTTCGCCGTAATTTATGTCAATTTGATCATCAATCTACCACTACAACTTAAAAGTGTAC 180
consensus_4707#1      -----------------------------------------TTTTTTTTTTTTTTTGTAC 19
                                                                *     **     *****

consensus_4707#0      CGACAAATAACTCTCTTCATCAGATCTAAACAGGTAACAATAATTCCAGTGAAAATGGGA 240
consensus_4707#1      CGACAAATAACTCTCTTCATCAGATCTAAACAGGTAACAATAATTCCAGTGAAAATGGGA 79
                      ************************************************************

consensus_4707#0      TGTACAGATAAATTCCTCAGTTGGAGCCAGAAATGTCGTTCAGAACTAACTGCATCTCAA 300
consensus_4707#1      TGTACAGATAAATTCCTCAGTTGGAGCCAGAAATGTCGTTCAGAACTAACTGCATCTCAA 139
                      ************************************************************

consensus_4707#0      GAACTACAGCGCGCCGCCTCCCTCTCACTCTGATGAGCCTCGGTATGTATCGATCTTGCC 360
consensus_4707#1      GAACTACAGCGCGCCGCCTCCCTCTCACTCTGATGAGCCTCGGTATGTATCGATCTTGCC 199
                      ************************************************************

consensus_4707#0      AACTCCAGGAGTAACAACTGCAAGTATGACAAGAGCCCCCAATAGCACCAGCAACATCCC 420
consensus_4707#1      AACTCCAGGAGTTACAACTGCAAGTATGACAAGAGCCCCCAATAGCACCAGCAACATCCC 259
                      ************ ***********************************************

consensus_4707#0      CAACGAGTTCATAAACATAGCTTCTGTCGAGAAACGCCCGATCATTTTCGCGCTCTGCAT 480
consensus_4707#1      CAACGAGTTCATAA-CATAGCTTCTGTCGAGAA-CGCC-GATCANTTTTGCGC-CTGCAT 315
                      ************** ****************** **** ***** *** **** ******

consensus_4707#0      GAAGATCGACTTCTCCAGAAGTCCCGAAACGCTTGTGGCGATGGCGAGAACGTAAAGGAA 540
consensus_4707#1      GAAGAT-GACTTCTCCAGAAGTC------------------------------------- 337
                      ****** ****************                                     

consensus_4707#0      GAGGCCGAAGAAGACATGCCAGGGGAGCAGGGAGGCTCTTCCACTCCTAGATCCACCAGG 600
consensus_4707#1      ------------------------------------------------------------
                                                                                  

consensus_4707#0      GTACCAAAATGTATAAAATCCAGTAGCCCACTGCAAGCTGAAGAAGATGATGCAAGAAAC 660
consensus_4707#1      ------------------------------------------------------------
                                                                                  

consensus_4707#0      GCCCAACCAGGAGTGAAGCGTATATAAGTGGTCGATCTGTCTCTCATCGTGGAACTTCCA 720
consensus_4707#1      ------------------------------------------------------------
                                                                                  

consensus_4707#0      TACAGTCCAGAGCCCAATCAGACTCAGGAGCATGGCGAGGAACTGCAAGGCAAGGTGTAC 780
consensus_4707#1      ------------------------------------------------------------
                                                                                  

consensus_4707#0      TAGCTTCTTCAGTTTCTTGGTTCCTGGCACTGTCTTGTAGGCCAAAATTGCTTCCCCATT 840
consensus_4707#1      ------------------------------------------------------------
                                                                                  

consensus_4707#0      CAGGACTACC 850
consensus_4707#1      ----------