These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4707#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 850 fasta sequence [AGCGATTTTATGGGATGATTAATTGT-TATTGTTAAGCATACAAAACTGCTTTCCTTTTTCCATATTCCTTCATACATTAAGAACACCCAAACATCTCGGGGCCCACGTCCTCCAGAATGGATTTCGCCGTAATTTATGTCAATTTGATCATCAATCTACCACTACAACTTAAAAGTGTACCGACAAATAACTCTCTTCATCAGATCTAAACAGGTAACAATAATTCCAGTGAAAATGGGATGTACAGATAAATTCCTCAGTTGGAGCCAGAAATGTCGTTCAGAACTAACTGCATCTCAAGAACTACAGCGCGCCGCCTCCCTCTCACTCTGATGAGCCTCGGTATGTATCGATCTTGCCAACTCCAGGAGTAACAACTGCAAGTATGACAAGAGCCCCCAATAGCACCAGCAACATCCCCAACGAGTTCATAAACATAGCTTCTGTCGAGAAACGCCCGATCATTTTCGCGCTCTGCATGAAGATCGACTTCTCCAGAAGTCCCGAAACGCTTGTGGCGATGGCGAGAACGTAAAGGAAGAGGCCGAAGAAGACATGCCAGGGGAGCAGGGAGGCTCTTCCACTCCTAGATCCACCAGGGTACCAAAATGTATAAAATCCAGTAGCCCACTGCAAGCTGAAGAAGATGATGCAAGAAACGCCCAACCAGGAGTGAAGCGTATATAAGTGGTCGATCTGTCTCTCATCGTGGAACTTCCATACAGTCCAGAGCCCAATCAGACTCAGGAGCATGGCGAGGAACTGCAAGGCAAGGTGTACTAGCTTCTTCAGTTTCTTGGTTCCTGGCACTGTCTTGTAGGCCAAAATTGCTTCCCCATTCAGGACTACC] [+] EMBL CB627303 [AGCGATTTTATGGGATGATTAATTGT TATTGTTAAGCATACAAAACTGCTTTCCTTTTTCCATATTCCTTCATACATTAAGAACACCCAAACATCTCGGGGCCCACGTCCTCCAGAATGGATTTCGCCGTAATTTATGTCAATTTGATCATCAATCTACCACTACAACTTAAAAGTGTACCGACAAATAACTCTCTTCATCAGATCTAAACAGGTAACAATAATTCCAGTGAAAATGGGATGTACAGATAAATTCCTCAGTTGGAGCCAGAAATGTCGTTCAGAACTAACTGCATCTCAAGAACTACAGCGCGCCGCCTCCCTCTCACTCTGATGAGCCTCGGTATGTATCGATCTTGCCAACTCCAGGAGTAACAACTGCAAGTATGACAAGAGCCCCCAATAGCACCAGCAACATCCCCAACGAGTTCATAAACATAGCTTCTGTCGAGAAACGCCCGATCATTTTCGCGCTCTGCATGAAGATCGACTTCTCCAGAAGTCCCGAAACGCTTGTGGCGATGGCGAGAACGTAAAGGAAGAGGCCGAAGAAGACATGCCAGGGGAGCAGGGAGGCTCTTCCACTCCTAGATCCACCAGGGTACCAAAATGTATAAAATCCAGTAGCCCACTGCAAGCTGAAGAAGATGATGCAAGAAACGCCCAACCAGGAGTGAAGCGTATATAAGTGGTCGATCTGTCTCTCATCGTGGAACTTCCATACAGTCCAGAGCCCAATCAGACTCAGGAGCATGGCGAGGAACTGCAAGGCAAGGTGTACTAGCTTCTTCAGTTTCTTGGTTCCTGGCACTGTCTTGTAGGCCAAAATTGCTTCCCCATTCAGGACTACC] [+] EMBL CB627302 [ GGGATGATTACTTTTATATTGTTAAGCATACAAAACTGCTTTCCTTTTTCCATATTCCTTCATACATTAAGAACACCCAAACATCTCGGGGCCCACGTCCTCCAAAATGGATTTCGCCGTAATTTATGTCAATTTGATCATCAATCTACCACTACAACTTAAAAGTGTACCGACAAATAACTCTCTTCATCAGATCTAAACAGGTAACAATAATTCCAGTGAAAATGGGATGTACAGATAAATTCCTCAGTTGGAGCCAGAAATGTCGTTCAGAACTAACTGCATCTCAAGAACTACAGCGCGCCGCCTCCCTCTCACTCTGATGAGCCTCGGTATGTATCGATCTTGCCAACTCCAGGAGTAACAACTGCAAGTATGACAAGAGCCCCCAATAGCACCAGCAACATCCCCAACGAGTTCATAAACATAGCTTCTGTCGAGAAACGCCCGATCATTTTCGCGCTCTGCATGAAGATCGACTTCTCCAAAAGTCCCGAAACGCTTGTGGCGATGGCGAGAACGTAAAGGAAGAGGCCGAATAAGACATGCCAGGGGAGCAGGGAGGCTCTTCCACTCCTAGATCCACCAGGGTACCAAAATGTATAAAATCCAGTAGCCCACTGCAAGCTGAAGAAGATGATGCAAGAAACGCCCAACCAGGAGTGAAGCGTATATAAGTGGTCGATC ] consensusID : consensus_4707#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [TTTTTTTTTTTTTTTGTACCGACAAATAACTCTCTTCATCAGATCTAAACAGGTAACAATAATTCCAGTGAAAATGGGATGTACAGATAAATTCCTCAGTTGGAGCCAGAAATGTCGTTCAGAACTAACTGCATCTCAAGAACTACAGCGCGCCGCCTCCCTCTCACTCTGATGAGCCTCGGTATGTATCGATCTTGCCAACTCCAGGAGTTACAACTGCAAGTATGACAAGAGCCCCCAATAGCACCAGCAACATCCCCAACGAGTTCATAACATAGCTTCTGTCGAGAACGCCGATCANTTTTGCGCCTGCATGAAGATGACTTCTCCAGAAGTC] [-] EMBL AU029470 [TTTTTTTTTTTTTTTGTACCGACAAATAACTCTCTTCATCAGATCTAAACAGGTAACAATAATTCCAGTGAAAATGGGATGTACAGATAAATTCCTCAGTTGGAGCCAGAAATGTCGTTCAGAACTAACTGCATCTCAAGAACTACAGCGCGCCGCCTCCCTCTCACTCTGATGAGCCTCGGTATGTATCGATCTTGCCAACTCCAGGAGTTACAACTGCAAGTATGACAAGAGCCCCCAATAGCACCAGCAACATCCCCAACGAGTTCATAACATAGCTTCTGTCGAGAACGCCGATCANTTTTGCGCCTGCATGAAGATGACTTCTCCAGAAGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4707#0 AGCGATTTTATGGGATGATTAATTGTTATTGTTAAGCATACAAAACTGCTTTCCTTTTTC 60 consensus_4707#1 ------------------------------------------------------------ consensus_4707#0 CATATTCCTTCATACATTAAGAACACCCAAACATCTCGGGGCCCACGTCCTCCAGAATGG 120 consensus_4707#1 ------------------------------------------------------------ consensus_4707#0 ATTTCGCCGTAATTTATGTCAATTTGATCATCAATCTACCACTACAACTTAAAAGTGTAC 180 consensus_4707#1 -----------------------------------------TTTTTTTTTTTTTTTGTAC 19 * ** ***** consensus_4707#0 CGACAAATAACTCTCTTCATCAGATCTAAACAGGTAACAATAATTCCAGTGAAAATGGGA 240 consensus_4707#1 CGACAAATAACTCTCTTCATCAGATCTAAACAGGTAACAATAATTCCAGTGAAAATGGGA 79 ************************************************************ consensus_4707#0 TGTACAGATAAATTCCTCAGTTGGAGCCAGAAATGTCGTTCAGAACTAACTGCATCTCAA 300 consensus_4707#1 TGTACAGATAAATTCCTCAGTTGGAGCCAGAAATGTCGTTCAGAACTAACTGCATCTCAA 139 ************************************************************ consensus_4707#0 GAACTACAGCGCGCCGCCTCCCTCTCACTCTGATGAGCCTCGGTATGTATCGATCTTGCC 360 consensus_4707#1 GAACTACAGCGCGCCGCCTCCCTCTCACTCTGATGAGCCTCGGTATGTATCGATCTTGCC 199 ************************************************************ consensus_4707#0 AACTCCAGGAGTAACAACTGCAAGTATGACAAGAGCCCCCAATAGCACCAGCAACATCCC 420 consensus_4707#1 AACTCCAGGAGTTACAACTGCAAGTATGACAAGAGCCCCCAATAGCACCAGCAACATCCC 259 ************ *********************************************** consensus_4707#0 CAACGAGTTCATAAACATAGCTTCTGTCGAGAAACGCCCGATCATTTTCGCGCTCTGCAT 480 consensus_4707#1 CAACGAGTTCATAA-CATAGCTTCTGTCGAGAA-CGCC-GATCANTTTTGCGC-CTGCAT 315 ************** ****************** **** ***** *** **** ****** consensus_4707#0 GAAGATCGACTTCTCCAGAAGTCCCGAAACGCTTGTGGCGATGGCGAGAACGTAAAGGAA 540 consensus_4707#1 GAAGAT-GACTTCTCCAGAAGTC------------------------------------- 337 ****** **************** consensus_4707#0 GAGGCCGAAGAAGACATGCCAGGGGAGCAGGGAGGCTCTTCCACTCCTAGATCCACCAGG 600 consensus_4707#1 ------------------------------------------------------------ consensus_4707#0 GTACCAAAATGTATAAAATCCAGTAGCCCACTGCAAGCTGAAGAAGATGATGCAAGAAAC 660 consensus_4707#1 ------------------------------------------------------------ consensus_4707#0 GCCCAACCAGGAGTGAAGCGTATATAAGTGGTCGATCTGTCTCTCATCGTGGAACTTCCA 720 consensus_4707#1 ------------------------------------------------------------ consensus_4707#0 TACAGTCCAGAGCCCAATCAGACTCAGGAGCATGGCGAGGAACTGCAAGGCAAGGTGTAC 780 consensus_4707#1 ------------------------------------------------------------ consensus_4707#0 TAGCTTCTTCAGTTTCTTGGTTCCTGGCACTGTCTTGTAGGCCAAAATTGCTTCCCCATT 840 consensus_4707#1 ------------------------------------------------------------ consensus_4707#0 CAGGACTACC 850 consensus_4707#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||