These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1044 fasta sequence [TACTCCGTCCTCCTCTTCACCGGTTAGATCGGCGGCGGCGGCGGCGATGATGAGGGCACGGTGGGCGGCGGGGATGCTGCGCCGCGCTAGCTCTGGCGAGGCTTCGCTCGCCGCGCGCGCGGTCTTCGCGCGCGGCTTCCTCGGCCTCAACATGAAGGCGAGTAAGGAGACCATCGAGAAGAAGGAGAAGGATAAGGCCAGGCTTATGGATGAAATGAGCAGGGGGTACTTCGCCGACATCGCAGAGATACGCAAGAACGGCGGCAAGCTTGCGACAGCGAATAAGATCATCATTCCGGAAATCGCAGCCGTGAAGTTCCCTGATCTTTCTGTGAAGTCCCCTGATGGCAGGACAGTGAATTTGCCGCTTGTCGCACCTCCGCGAAACGATGATCCCCAGACTGGCAATACAGTGGACACACAAAATGATGATTGTAAGGCTGGTGATATGGTGGTTCCTGATGCTTCATTGGTGTGCCTTTCCTTTCGCGCAAGCTCCCAGAAAATGGCAGAAACGTGGAGCCTACCTTTTCTTGATGCATTTAGTTCTGCTGGGAATATTCAAGTGTATGAGGTCTCATTTATTGATTCATGGCTGTTATCATCAAGTCCTGTGAGACAAGTATTCCTCAAGGTGATGACAAAATCCAACAATCCACAGAGACATGCTGTATATGCCTTTGGTGACCACTATTATTTCAGGAAGAAGCTTCATATCCTTAACCTTCTTACTGGGTACATATACCTGGTTGATCGCCTCGGAAGAGTGAGGTGGCAAGGTTTCGGATCTGCGACGCAGGAAGAGTTGTCATCGCTAACTGCATGTACCTCCATTTTGTTAGATGGAAAATGAGATTTAGATGGATACTGAAATATTTGGGGTTGGAGAAATTTTGTCATTGCGAATCCATAGCTGTATCACCTCTCGTTTCAGCATATTGAGGGATGATTTTTTTTCCTCGCGGTTAATAAGCGTAAATTGGATTGATTTTCTCCTGCCCAATGACATTGTGTAAACAGCATTGCTTGCATGTCATTGTTATT] [+] EMBL AK099352 [TACTCCGTCCTCCTCTTCACCGGTTAGATCGGCGGCGGCGGCGGCGATGATGAGGGCACGGTGGGCGGCGGGGATGCTGCGCCGCGCTAGCTCTGGCGAGGCTTCGCTCGCCGCGCGCGCGGTCTTCGCGCGCGGCTTCCTCGGCCTCAACATGAAGGCGAGTAAGGAGACCATCGAGAAGAAGGAGAAGGATAAGGCCAGGCTTATGGATGAAATGAGCAGGGGGTACTTCGCCGACATCGCAGAGATACGCAAGAACGGCGGCAAGCTTGCGACAGCGAATAAGATCATCATTCCGGAAATCGCAGCCGTGAAGTTCCCTGATCTTTCTGTGAAGTCCCCTGATGGCAGGACAGTGAATTTGCCGCTTGTCGCACCTCCGCGAAACGATGATCCCCAGACTGGCAATACAGTGGACACACAAAATGATGATTGTAAGGCTGGTGATATGGTGGTTCCTGATGCTTCATTGGTGTGCCTTTCCTTTCGCGCAAGCTCCCAGAAAATGGCAGAAACGTGGAGCCTACCTTTTCTTGATGCATTTAGTTCTGCTGGGAATATTCAAGTGTATGAGGTCTCATTTATTGATTCATGGCTGTTATCATCAAGTCCTGTGAGACAAGTATTCCTCAAGGTGATGACAAAATCCAACAATCCACAGAGACATGCTGTATATGCCTTTGGTGACCACTATTATTTCAGGAAGAAGCTTCATATCCTTAACCTTCTTACTGGGTACATATACCTGGTTGATCGCCTCGGAAGAGTGAGGTGGCAAGGTTTCGGATCTGCGACGCAGGAAGAGTTGTCATCGCTAACTGCATGTACCTCCATTTTGTTAGATGGAAAATGAGATTTAGATGGATACTGAAATATTTGGGGTTGGAGAAATTTTGTCATTGCGAATCCATAGCTGTATCACCTCTCGTTTCAGCATATTGAGGGATGATTTTTTTTCCTCGCGGTTAATAAGCGTA ] [+] EMBL AK059866 [ ACTCCGTCCTCCTCTTCACCGGTTAGATCGGCGGCGGCGGCGGCGATGATGAGGGCACGGTGGGCGGCGGGGATGCTGCGCCGCGCTAGCTCTGGCGAGGCTTCGCTCGCCGCGCGCGCGGTCTTCGCGCGCGGCTTCCTCGGCCTCAACATGAAGGCGAGTAAGGAGACCATCGAGAAGAAGGAGAAGGATAAGGCCAGGCTTATGGATGAAATGAGCAGGGGGTACTTCGCCGACATCGCAGAGATACGCAAGAACGGCGGCAAGCTTGCGACAGCGAATAAGATCATCATTCCGGAAATCGCAGCCGTGAAGTTCCCTGATCTTTCTGTGAAGTCCCCTGATGGCAGGACAGTGAATTTGCCGCTTGTCGCACCTCCGCGAAACGATGATCCCCAGACTGGCAATACAGTGGACACACAAAATGATGATTGTAAGGCTGGTGATATGGTGGTTCCTGATGCTTCATTGGTGTGCCTTTCCTTTCGCGCAAGCTCCCAGAAAATGGCAGAAACGTGGAGCCTACCTTTTCTTGATGCATTTAGTTCTGCTGGGAATATTCAAGTGTATGAGGTCTCATTTATTGATTCATGGCTGTTATCATCAAGTCCTGTGAGACAAGTATTCCTCAAGGTGATGACAAAATCCAACAATCCACAGAGACATGCTGTATATGCCTTTGGTGACCACTATTATTTCAGGAAGAAGCTTCATATCCTTAACCTTCTTACTGGGTACATATACCTGGTTGATCGCCTCGGAAGAGTGAGGTGGCAAGGTTTCGGATCTGCGACGCAGGAAGAGTTGTCATCGCTAACTGCATGTACCTCCATTTTGTTAGATGGAAAATGAGATTTAGATGGATACTGAAATATTTGGGGTTGGAGAAATTTTGTCATTGCGAATCCATAGCTGTATCACCTCTCGTTTCAGCATATTGAGGGATGATTTTTTTTCCTCGCGGTTAATAAGCGTAAATTGGATTGATTTTCTCCTGCCCAATGACATTGTGTAAACAGCATTGCTTGCATGTCATTGTTATT] consensusID : consensus_4709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence [CTTGTCGCACCTCCGCGAAACGATGATCCCCAGACTGGCAATACAGTGGACACACAAAATGATGATTGTAAGGCTTGTGATATGGTGGTTCCTGATGCTTCATTGGTGTGCCTTTCCTTTCGCGCAAGCTCCCAGAAAATGGCAGAAACGTGGAGCCTACCTTTTCTTGATGCATTTAGTTCTGCTGGGAATATTCAAGTGTATGAGGTCTCATTTATTGATTCATGGCTGTTATCATCAAGTCCTGTGAGACAAGTATTCCTCAAGGTGATGACAAAATCCAACAATCCACAGAGACATGCTGTATATGCCTTTGGTGACCACTATTATTTCAGGAAGAAGCTTCATATCCTTAACCTTCTTACTGGGTAATGTTTCTTCCTTCCCGTTGTTCGTTTGGCAAACTTTAGATGTAAAGGTCCTGGTTACCACATACTGGGCGATGTTTCCTCCTTCCCTTCGTTTATATGTTTTGTTCTCTCCCTTTGTTCAAACTCTTCTACTGCAGGTACATATANCCTGGTTGATCGCCTCGGAAGAGTGAGGTGGCAAGGTTTCGGATCTGCGACGCAGGAAGAGTTGTCATCGCTAACTGCAT] [+] EMBL CF328929 [CTTGTCGCACCTCCGCGAAACGATGATCCCCAGACTGGCAATACAGTGGACACACAAAATGATGATTGTAAGGCTTGTGATATGGTGGTTCCTGATGCTTCATTGGTGTGCCTTTCCTTTCGCGCAAGCTCCCAGAAAATGGCAGAAACGTGGAGCCTACCTTTTCTTGATGCATTTAGTTCTGCTGGGAATATTCAAGTGTATGAGGTCTCATTTATTGATTCATGGCTGTTATCATCAAGTCCTGTGAGACAAGTATTCCTCAAGGTGATGACAAAATCCAACAATCCACAGAGACATGCTGTATATGCCTTTGGTGACCACTATTATTTCAGGAAGAAGCTTCATATCCTTAACCTTCTTACTGGGTAATGTTTCTTCCTTCCCGTTGTTCGTTTGGCAAACTTTAGATGTAAAGGTCCTGGTTACCACATACTGGGCGATGTTTCCTCCTTCCCTTCGTTTATATGTTTTGTTCTCTCCCTTTGTTCAAACTCTTCTACTGCAGGTACATATANCCTGGTTGATCGCCTCGGAAGAGTGAGGTGGCAAGGTTTCGGATCTGCGACGCAGGAAGAGTTGTCATCGCTAACTGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4709#0 TACTCCGTCCTCCTCTTCACCGGTTAGATCGGCGGCGGCGGCGGCGATGATGAGGGCACG 60 consensus_4709#1 ------------------------------------------------------------ consensus_4709#0 GTGGGCGGCGGGGATGCTGCGCCGCGCTAGCTCTGGCGAGGCTTCGCTCGCCGCGCGCGC 120 consensus_4709#1 ------------------------------------------------------------ consensus_4709#0 GGTCTTCGCGCGCGGCTTCCTCGGCCTCAACATGAAGGCGAGTAAGGAGACCATCGAGAA 180 consensus_4709#1 ------------------------------------------------------------ consensus_4709#0 GAAGGAGAAGGATAAGGCCAGGCTTATGGATGAAATGAGCAGGGGGTACTTCGCCGACAT 240 consensus_4709#1 ------------------------------------------------------------ consensus_4709#0 CGCAGAGATACGCAAGAACGGCGGCAAGCTTGCGACAGCGAATAAGATCATCATTCCGGA 300 consensus_4709#1 ------------------------------------------------------------ consensus_4709#0 AATCGCAGCCGTGAAGTTCCCTGATCTTTCTGTGAAGTCCCCTGATGGCAGGACAGTGAA 360 consensus_4709#1 ------------------------------------------------------------ consensus_4709#0 TTTGCCGCTTGTCGCACCTCCGCGAAACGATGATCCCCAGACTGGCAATACAGTGGACAC 420 consensus_4709#1 -------CTTGTCGCACCTCCGCGAAACGATGATCCCCAGACTGGCAATACAGTGGACAC 53 ***************************************************** consensus_4709#0 ACAAAATGATGATTGTAAGGCTGGTGATATGGTGGTTCCTGATGCTTCATTGGTGTGCCT 480 consensus_4709#1 ACAAAATGATGATTGTAAGGCTTGTGATATGGTGGTTCCTGATGCTTCATTGGTGTGCCT 113 ********************** ************************************* consensus_4709#0 TTCCTTTCGCGCAAGCTCCCAGAAAATGGCAGAAACGTGGAGCCTACCTTTTCTTGATGC 540 consensus_4709#1 TTCCTTTCGCGCAAGCTCCCAGAAAATGGCAGAAACGTGGAGCCTACCTTTTCTTGATGC 173 ************************************************************ consensus_4709#0 ATTTAGTTCTGCTGGGAATATTCAAGTGTATGAGGTCTCATTTATTGATTCATGGCTGTT 600 consensus_4709#1 ATTTAGTTCTGCTGGGAATATTCAAGTGTATGAGGTCTCATTTATTGATTCATGGCTGTT 233 ************************************************************ consensus_4709#0 ATCATCAAGTCCTGTGAGACAAGTATTCCTCAAGGTGATGACAAAATCCAACAATCCACA 660 consensus_4709#1 ATCATCAAGTCCTGTGAGACAAGTATTCCTCAAGGTGATGACAAAATCCAACAATCCACA 293 ************************************************************ consensus_4709#0 GAGACATGCTGTATATGCCTTTGGTGACCACTATTATTTCAGGAAGAAGCTTCATATCCT 720 consensus_4709#1 GAGACATGCTGTATATGCCTTTGGTGACCACTATTATTTCAGGAAGAAGCTTCATATCCT 353 ************************************************************ consensus_4709#0 TAACCTTCTTACTGGGTA------CATATACCTGGTTGATCGCCTCGGAAGAGTGAGGTG 774 consensus_4709#1 TAACCTTCTTACTGGGTAATGTTTCTTCCTTCCCGTTGTTCGTTTGGCAAACTTTAGATG 413 ****************** * * * **** *** * * ** * ** ** consensus_4709#0 GCAAGGTTTCGGATCTGCGACGCAGGAAGAGTTGTCATCGCTAACTGCATGTACCTCCAT 834 consensus_4709#1 TAAAGGTCCTGGTTACCACATACTGGGCGATGTTTCCTCCTTCCCTTCGTTTATATGTTT 473 ***** ** * * * ** ** * ** ** * ** * * ** * * consensus_4709#0 TTTGTTAGATGGAAAATGAGATTTAGATGGATACTGAAATATTTGGGGTTGGAGAAATTT 894 consensus_4709#1 TGTTCTCTCCCTTTGTTCAAACTCTTCTAC-TGCAGGTACATATANCCTGG-------TT 525 * * * * * * * * * * * * ** * * * ** consensus_4709#0 TGTCATTGCGAATCCATAGCTGTATCACCTCTCGTTTCAGCATATTGAGGGATGATTTTT 954 consensus_4709#1 GATCGCCTCGGAAGAGTGAGGTGGCAAGGTTTCGGATCTGCG-ACGCAGGAAGAGTTGTC 584 ** ** * * * * *** ** ** * *** * ** * consensus_4709#0 TTTCCTCGCGGTTAATAAGCGTAAATTGGATTGATTTTCTCCTGCCCAATGACATTGTGT 1014 consensus_4709#1 ATCGCTAACTGCAT---------------------------------------------- 598 * ** * * consensus_4709#0 AAACAGCATTGCTTGCATGTCATTGTTATT 1044 consensus_4709#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||