cluster # 4713

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Oryza sativa
cluster # 4713 cluster # 4713 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4713#0 length = 445 sequences # 2

consensus_4713#1 length = 316 sequences # 1

consensusID : consensus_4713#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 445
fasta sequence

                              [GACAAAATTGATTGATCCAAAAGAACCCGTTACAAAACAAGCGCTAGCGCATCCTCATAATTCCCATCCCAAATCCTAATTCATAACCCGATTTGAAGAATCCACAGGCGATGAAAAACAGCATGCTCTTGACGAAGATGCCTTCTCCATTGGACGCCTTCGCAAAAGATACCCAACTTTAACAAAGTAAAGGCAACTTCATATCAACCCCTCGAGTTTCCGCCGTGTGATGTTGTCGAGACCGAGCCAATCGAAAGGCATG-GCACCGGTGTGCGAGCTGAGCCCGAGGTGGTCATATCGAAGGAAATTTACTTGTGAGGGCAGCCATCGCAAGAGCAGCTAGCGCCGCAACCGCAAGCACCGGAGGAAGCACATCCGCAGCCAGACATTTTGATTTGTGGTTTGGGGGGGGGGTTGGTTTGGTTTGGTTTGGTTTGGTTTGAAG]

[+] EMBL CB965152             [GACAAAATTGATTGATCCAAAAGAACCCGTTACAAAACAAGCGCTAGCGCATCCTCATAATTCCCATCCCAAATCCTAATTCATAACCCGATTTGAAGAATCCACAGGCGATGAAAAACAGCATGCTCTTGACGAAGATGCCTTCTCCATTGGACGCCTTCGCAAAAGATACCCAACTTTAACAAAGTAAAGGCAACTTCATATCAACCCCTCGAGTTTCCGCCGTGTGATGTTGTCGAGACCGAGCCAATCGAAAGGCATG GCACCGGTGTGCGAGCTGAGCCCGAGGTGGTCATATCGAAGGAAATTTACTTGTGAGGGCAGCCATCGCAAGAGCAGCTAGCGCCGCAACCGCAAGCACCGGAGGAAGCACATCCGCAGCCAGACATTTTGATTTGTGGTTTGGGGGGGGGGTTGGTTTGGTTTGGTTTGGTTTGGTTTGAAG]
[+] EMBL BI306718             [   AAATTTGATTGATCAAAAAGAACCCGTTACAAAACAAGCGCTAGCGCATCCTCATAATTCCCATCCCAAATCCTAATTCATAACCCGATTTGAAGAATCCACAGGCGATGAAAAACAGCATGCTCTTGACGAAGATGCCTTCTCCATTGGACGCCTTCGCAAAAGATACCCAACTTTAACAAAGTAAAGGCAACTTCATATCAACCCCTCGAGTTTCCGCCGTGTGATGTTGTCGAGACCGAGCCAATCGAAAGGCATGNGCACCGGTGTGCGAGCTGAGCCCGAGGTGGTCATATCGAAGGAAATTTACTTGTGAGGGCAGCCATCGCAAGAGCAGCTAGCGCCGCAACCGCAAGCACCGGAGGAAGCACATCCGCAGCCAGACATTTTGATTTGTGGTTgg                                        ]




>consensus_4713#0
GACAAAATTGATTGATCCAAAAGAACCCGTTACAAAACAAGCGCTAGCGCATCCTCATAA
TTCCCATCCCAAATCCTAATTCATAACCCGATTTGAAGAATCCACAGGCGATGAAAAACA
GCATGCTCTTGACGAAGATGCCTTCTCCATTGGACGCCTTCGCAAAAGATACCCAACTTT
AACAAAGTAAAGGCAACTTCATATCAACCCCTCGAGTTTCCGCCGTGTGATGTTGTCGAG
ACCGAGCCAATCGAAAGGCATGGCACCGGTGTGCGAGCTGAGCCCGAGGTGGTCATATCG
AAGGAAATTTACTTGTGAGGGCAGCCATCGCAAGAGCAGCTAGCGCCGCAACCGCAAGCA
CCGGAGGAAGCACATCCGCAGCCAGACATTTTGATTTGTGGTTTGGGGGGGGGGTTGGTT
TGGTTTGGTTTGGTTTGGTTTGAAG

consensusID : consensus_4713#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 316
fasta sequence

                              [ATATTTGTCTTGGTTCGAACAAAGATTTGATGTGATCCAAAAGAACCCTGGTACAAAACAAGCGCTAGCGCATCCTCATAATTCCCCTCCCAAATCCTAATTCATAACCCTGATTTGAAGAATCCACAGGCGCGTGAAAAACAGCATGCTCTTGACGACAGATGCCTTCTCCAGTTGGACGCCTTCGCAATAAGATACCCAACTTTTAACAAGAGTAAAGGCGTAGCTTCATATCAACCGCCTTCGAGATTTCCGCACGTGTGTATGTTGTCGGAGACCGTAGCCATGTCGAACAGGCATGGTGACCTGGTGTGCT]

[+] EMBL CB967131             [ATATTTGTCTTGGTTCGAACAAAGATTTGATGTGATCCAAAAGAACCCTGGTACAAAACAAGCGCTAGCGCATCCTCATAATTCCCCTCCCAAATCCTAATTCATAACCCTGATTTGAAGAATCCACAGGCGCGTGAAAAACAGCATGCTCTTGACGACAGATGCCTTCTCCAGTTGGACGCCTTCGCAATAAGATACCCAACTTTTAACAAGAGTAAAGGCGTAGCTTCATATCAACCGCCTTCGAGATTTCCGCACGTGTGTATGTTGTCGGAGACCGTAGCCATGTCGAACAGGCATGGTGACCTGGTGTGCT]




>consensus_4713#1
ATATTTGTCTTGGTTCGAACAAAGATTTGATGTGATCCAAAAGAACCCTGGTACAAAACA
AGCGCTAGCGCATCCTCATAATTCCCCTCCCAAATCCTAATTCATAACCCTGATTTGAAG
AATCCACAGGCGCGTGAAAAACAGCATGCTCTTGACGACAGATGCCTTCTCCAGTTGGAC
GCCTTCGCAATAAGATACCCAACTTTTAACAAGAGTAAAGGCGTAGCTTCATATCAACCG
CCTTCGAGATTTCCGCACGTGTGTATGTTGTCGGAGACCGTAGCCATGTCGAACAGGCAT
GGTGACCTGGTGTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4713#0      -----------------GACAAAA--TTGAT-TGATCCAAAAGAACCC-GTTACAAAACA 39
consensus_4713#1      ATATTTGTCTTGGTTCGAACAAAGATTTGATGTGATCCAAAAGAACCCTGGTACAAAACA 60
                                        *****   ***** **************** * *********

consensus_4713#0      AGCGCTAGCGCATCCTCATAATTCCCATCCCAAATCCTAATTCATAACCC-GATTTGAAG 98
consensus_4713#1      AGCGCTAGCGCATCCTCATAATTCCCCTCCCAAATCCTAATTCATAACCCTGATTTGAAG 120
                      ************************** *********************** *********

consensus_4713#0      AATCCACAGGCG-ATGAAAAACAGCATGCTCTTGACGA-AGATGCCTTCTCCA-TTGGAC 155
consensus_4713#1      AATCCACAGGCGCGTGAAAAACAGCATGCTCTTGACGACAGATGCCTTCTCCAGTTGGAC 180
                      ************  ************************ ************** ******

consensus_4713#0      GCCTTCGCAA-AAGATACCCAACTTT-AACAA-AGTAAAGGC--AACTTCATATCAACC- 209
consensus_4713#1      GCCTTCGCAATAAGATACCCAACTTTTAACAAGAGTAAAGGCGTAGCTTCATATCAACCG 240
                      ********** *************** ***** *********  * ************* 

consensus_4713#0      -CCTCGAG-TTTCCGC-CGTGTG-ATGTTGTCG-AGACCG-AGCCA-ATCGAA-AGGCAT 261
consensus_4713#1      CCTTCGAGATTTCCGCACGTGTGTATGTTGTCGGAGACCGTAGCCATGTCGAACAGGCAT 300
                       * ***** ******* ****** ********* ****** *****  ***** ******

consensus_4713#0      GGCA--CCGGTGTGCGAGCTGAGCCCGAGGTGGTCATATCGAAGGAAATTTACTTGTGAG 319
consensus_4713#1      GGTGACCTGGTGTGCT-------------------------------------------- 316
                      **    * *******                                             

consensus_4713#0      GGCAGCCATCGCAAGAGCAGCTAGCGCCGCAACCGCAAGCACCGGAGGAAGCACATCCGC 379
consensus_4713#1      ------------------------------------------------------------
                                                                                  

consensus_4713#0      AGCCAGACATTTTGATTTGTGGTTTGGGGGGGGGGTTGGTTTGGTTTGGTTTGGTTTGGT 439
consensus_4713#1      ------------------------------------------------------------
                                                                                  

consensus_4713#0      TTGAAG 445
consensus_4713#1      ------