cluster # 4715

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Oryza sativa
cluster # 4715 cluster # 4715 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4715#0 length = 829 sequences # 1

consensus_4715#1 length = 55 sequences # 2

consensusID : consensus_4715#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 829
fasta sequence

                              [GTGGCCGCCGCTCGCCTCCCCTCCCCGCACCGCGCCGGGCGCCAGATCTTCCAGAAGCTTCTAGAACCCGCCCGCTCCATCCAATGGGGGACAACGCCTCCGCCTCCGCCTCCGTGCTGGCGCCGCCGGTGGGAGCGGGTGAGGGTGACGCGCCGTCGTTCTCCTACCTCGCCGCGCTCGGCAACTGCCCGCTCGTCGCCGCCGTCCTCGCCGGCGCCATCGCGCAGTTCATCAAGGTGTTGACCACATGGTACAAGGAGAATCGGTGGGACGCGAAGCAGCTGGTGGGGTCCGGCGGGATGCCGTCGTCGCACTCGGCCACCGTCGTCGCGCTCGCCGTCGCCGTCGGCCTCCAGGAAGGGTTCGGCAGCTCGCTCTTCGCCACCGCCGCCATCTTCGCGTCCGTGGTTATGTATGATGCTTTTGGTGTCAGGCTACATGCAGGGAAGCAAGCAGAGGTCTTGAATCAAATTGTGTATGAACTCCCATCGGAGCATCCACTGGCTGAAACAAGACCACTCCGAGAACTCCTTGGACACACACCAGCTCAGGTTTTTGCTGGTGGGGTGCTTGGATTTGCAGTGGCCACATTTACAGGCATGATAGCTGGGCTTGGTAACACTGGTTCATTGCCCTGACTGCCGGATTGGCGATATTTGTAGCTTCACGCCAAATTTGTTGAAGTGTTAGAATCCAAATCGGTTATGCGTTTTCGGGTCGCGTACAGGAGTATGTAAAGTTTTTTTTTTCTTTTGTGGAATTCGTAAGCCAATCTCATGTGAGAAAGAAAACTCATGTCATTCTTTTGTAGCTAAGAAATAATCAGCTT]

[+] EMBL AK071322             [GTGGCCGCCGCTCGCCTCCCCTCCCCGCACCGCGCCGGGCGCCAGATCTTCCAGAAGCTTCTAGAACCCGCCCGCTCCATCCAATGGGGGACAACGCCTCCGCCTCCGCCTCCGTGCTGGCGCCGCCGGTGGGAGCGGGTGAGGGTGACGCGCCGTCGTTCTCCTACCTCGCCGCGCTCGGCAACTGCCCGCTCGTCGCCGCCGTCCTCGCCGGCGCCATCGCGCAGTTCATCAAGGTGTTGACCACATGGTACAAGGAGAATCGGTGGGACGCGAAGCAGCTGGTGGGGTCCGGCGGGATGCCGTCGTCGCACTCGGCCACCGTCGTCGCGCTCGCCGTCGCCGTCGGCCTCCAGGAAGGGTTCGGCAGCTCGCTCTTCGCCACCGCCGCCATCTTCGCGTCCGTGGTTATGTATGATGCTTTTGGTGTCAGGCTACATGCAGGGAAGCAAGCAGAGGTCTTGAATCAAATTGTGTATGAACTCCCATCGGAGCATCCACTGGCTGAAACAAGACCACTCCGAGAACTCCTTGGACACACACCAGCTCAGGTTTTTGCTGGTGGGGTGCTTGGATTTGCAGTGGCCACATTTACAGGCATGATAGCTGGGCTTGGTAACACTGGTTCATTGCCCTGACTGCCGGATTGGCGATATTTGTAGCTTCACGCCAAATTTGTTGAAGTGTTAGAATCCAAATCGGTTATGCGTTTTCGGGTCGCGTACAGGAGTATGTAAAGTTTTTTTTTTCTTTTGTGGAATTCGTAAGCCAATCTCATGTGAGAAAGAAAACTCATGTCATTCTTTTGTAGCTAAGAAATAATCAGCTT]




>consensus_4715#0
GTGGCCGCCGCTCGCCTCCCCTCCCCGCACCGCGCCGGGCGCCAGATCTTCCAGAAGCTT
CTAGAACCCGCCCGCTCCATCCAATGGGGGACAACGCCTCCGCCTCCGCCTCCGTGCTGG
CGCCGCCGGTGGGAGCGGGTGAGGGTGACGCGCCGTCGTTCTCCTACCTCGCCGCGCTCG
GCAACTGCCCGCTCGTCGCCGCCGTCCTCGCCGGCGCCATCGCGCAGTTCATCAAGGTGT
TGACCACATGGTACAAGGAGAATCGGTGGGACGCGAAGCAGCTGGTGGGGTCCGGCGGGA
TGCCGTCGTCGCACTCGGCCACCGTCGTCGCGCTCGCCGTCGCCGTCGGCCTCCAGGAAG
GGTTCGGCAGCTCGCTCTTCGCCACCGCCGCCATCTTCGCGTCCGTGGTTATGTATGATG
CTTTTGGTGTCAGGCTACATGCAGGGAAGCAAGCAGAGGTCTTGAATCAAATTGTGTATG
AACTCCCATCGGAGCATCCACTGGCTGAAACAAGACCACTCCGAGAACTCCTTGGACACA
CACCAGCTCAGGTTTTTGCTGGTGGGGTGCTTGGATTTGCAGTGGCCACATTTACAGGCA
TGATAGCTGGGCTTGGTAACACTGGTTCATTGCCCTGACTGCCGGATTGGCGATATTTGT
AGCTTCACGCCAAATTTGTTGAAGTGTTAGAATCCAAATCGGTTATGCGTTTTCGGGTCG
CGTACAGGAGTATGTAAAGTTTTTTTTTTCTTTTGTGGAATTCGTAAGCCAATCTCATGT
GAGAAAGAAAACTCATGTCATTCTTTTGTAGCTAAGAAATAATCAGCTT

consensusID : consensus_4715#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 55
fasta sequence

                              [TTTTTTGGGAATACAAATAAGCTGATTATTTCTTAGCTACAAAAGAATGACATGA]

[+] EMBL CF329104             [TTTTTTGGGAATACAAATAAGCTGATTATTTCTTAGCTACAAAAGAATGACATG ]
[-] EMBL CF329105             [ TTTTTGTGAATACAAATAAGCTGATTATTTCTTAGCTACAAAAGAATGACATGA]




>consensus_4715#1
TTTTTTGGGAATACAAATAAGCTGATTATTTCTTAGCTACAAAAGAATGACATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4715#0      GTGGCCGCCGCTCGCCTCCCCTCCCCGCACCGCGCCGGGCGCCAGATCTTCCAGAAGCTT 60
consensus_4715#1      ------------------------------------------------------------
                                                                                  

consensus_4715#0      CTAGAACCCGCCCGCTCCATCCAATGGGGGACAACGCCTCCGCCTCCGCCTCCGTGCTGG 120
consensus_4715#1      ------------------------------------------------------------
                                                                                  

consensus_4715#0      CGCCGCCGGTGGGAGCGGGTGAGGGTGACGCGCCGTCGTTCTCCTACCTCGCCGCGCTCG 180
consensus_4715#1      ------------------------------------------------------------
                                                                                  

consensus_4715#0      GCAACTGCCCGCTCGTCGCCGCCGTCCTCGCCGGCGCCATCGCGCAGTTCATCAAGGTGT 240
consensus_4715#1      ------------------------------------------------------------
                                                                                  

consensus_4715#0      TGACCACATGGTACAAGGAGAATCGGTGGGACGCGAAGCAGCTGGTGGGGTCCGGCGGGA 300
consensus_4715#1      ------------------------------------------------------------
                                                                                  

consensus_4715#0      TGCCGTCGTCGCACTCGGCCACCGTCGTCGCGCTCGCCGTCGCCGTCGGCCTCCAGGAAG 360
consensus_4715#1      ------------------------------------------------------------
                                                                                  

consensus_4715#0      GGTTCGGCAGCTCGCTCTTCGCCACCGCCGCCATCTTCGCGTCCGTGGTTATGTATGATG 420
consensus_4715#1      ------------------------------------------------------------
                                                                                  

consensus_4715#0      CTTTTGGTGTCAGGCTACATGCAGGGAAGCAAGCAGAGGTCTTGAATCAAATTGTGTATG 480
consensus_4715#1      ------------------------------------------------------------
                                                                                  

consensus_4715#0      AACTCCCATCGGAGCATCCACTGGCTGAAACAAGACCACTCCGAGAACTCCTTGGACACA 540
consensus_4715#1      ------------------------------------------------------------
                                                                                  

consensus_4715#0      CACCAGCTCAGGTTTTTGCTGGTGGGGTGCTTGGATTTGCAGTGGCCACATTTACAGGCA 600
consensus_4715#1      ------------------------------------------------------------
                                                                                  

consensus_4715#0      TGATAGCTGGGCTTGGTAACACTGGTTCATTGCCCTGACTGCCGGATTGGCGATATTTGT 660
consensus_4715#1      ------------------------------------------------------------
                                                                                  

consensus_4715#0      AGCTTCACGCCAAATTTGTTGAAGTGTTAGAATCCAAATCGGTTATGCGTTTTCGGGTCG 720
consensus_4715#1      ------------------------------------------------------------
                                                                                  

consensus_4715#0      CGTACAGGAGTATGTAAAGTTTTTTTTTTCTTTTGTGGAATTCGTAAGCCAATCTCATGT 780
consensus_4715#1      ------------------------------------------------------TTTTTT 6
                                                                            *  * *

consensus_4715#0      GAGAAAGAAAACTCATGTCATTCTTTTGTAGCTAAGAAATAATCAGCTT- 829
consensus_4715#1      GGGAATACAAA-TAAGCTGATTATTTCTTAGCTACAAAAGAATGACATGA 55
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