cluster # 4716

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Oryza sativa
cluster # 4716 cluster # 4716 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4716#0 length = 384 sequences # 2

consensus_4716#1 length = 213 sequences # 1

consensusID : consensus_4716#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 384
fasta sequence

                              [ATCCCTCCCTTTGATCTTCCTTTTTCCTTTTTGTTTTCTTGCGATCGCCGGAGTTGGTGCCGTCGGTGACCGGGGTTTTTTGGTTGTTCGCCGGAGATGGTTCATCTGGTCGTGGCTTGAGTTGTTTGGATCTGGATTTGGTAGGTGAGTAGTAGTACTAAGGTGTTTGGAAGGCGAGGGTGGAAGGATGAGCTTTGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCNGCNGCNGCANTNGANGATCCGGCNGCTGCAGGNAGGNTGAACTGGGAGATGCTGGACAAGTCGCGGTTCTTCGTCCTCGGCNCNGCGCTCTTCTCGAGCNTCTCCGCNGCGCTGTACCCNGCCGTCGTGGTCAAGACGCACCTNCAGGTTGC]

[+] EMBL CB674971             [ATCCCTCCCTTTGATCTTCCTTTTTCCTTTTTGTTTTCTTGCGATCGCCGGAGTTGGTGCCGTCGGTGACCGGGGTTTTTTGGTTGTTCGCCGGAGATGGTTCATCTGGTCGTGGCTTGAGTTGTTTGGATCTGGATTTGGTAGGTGAGTAGTAGTACTAAGGTGTTTGGAAGGCGAGGGTGGAAGGATGAGCTTTGGTGTTGTGGATATGGATGAGGAG                                                                                                                                                                    ]
[+] EMBL AU069404             [                                                                                                                                                                                 GGGTGGAAGGATGAGCTTTGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCNGCNGCNGCANTNGANGATCCGGCNGCTGCAGGNAGGNTGAACTGGGAGATGCTGGACAAGTCGCGGTTCTTCGTCCTCGGCNCNGCGCTCTTCTCGAGCNTCTCCGCNGCGCTGTACCCNGCCGTCGTGGTCAAGACGCACCTNCAGGTTGC]




>consensus_4716#0
ATCCCTCCCTTTGATCTTCCTTTTTCCTTTTTGTTTTCTTGCGATCGCCGGAGTTGGTGC
CGTCGGTGACCGGGGTTTTTTGGTTGTTCGCCGGAGATGGTTCATCTGGTCGTGGCTTGA
GTTGTTTGGATCTGGATTTGGTAGGTGAGTAGTAGTACTAAGGTGTTTGGAAGGCGAGGG
TGGAAGGATGAGCTTTGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCNGCNGCNGC
ANTNGANGATCCGGCNGCTGCAGGNAGGNTGAACTGGGAGATGCTGGACAAGTCGCGGTT
CTTCGTCCTCGGCNCNGCGCTCTTCTCGAGCNTCTCCGCNGCGCTGTACCCNGCCGTCGT
GGTCAAGACGCACCTNCAGGTTGC

consensusID : consensus_4716#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 213
fasta sequence

                              [TGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCGGCGGCGGCCGATGAGATCCGGCGGCTGCCGGCGGAGGTGAACTGGGAGATGCTGGACAAGTCGCGGTTCTTCGTCCTCGGCGCGGCGCTCTTCTCGGGCGTCTCCGCGGCGCTGTACCCGGCCGTCGTGGTCAAGACGCACCTGCAGGTGGCGCCGCCGNCACAGGCGGNCACCGC]

[+] EMBL AU183894             [TGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCGGCGGCGGCCGATGAGATCCGGCGGCTGCCGGCGGAGGTGAACTGGGAGATGCTGGACAAGTCGCGGTTCTTCGTCCTCGGCGCGGCGCTCTTCTCGGGCGTCTCCGCGGCGCTGTACCCGGCCGTCGTGGTCAAGACGCACCTGCAGGTGGCGCCGCCGNCACAGGCGGNCACCGC]




>consensus_4716#1
TGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCGGCGGCGGCCGATGAGATCCGGCG
GCTGCCGGCGGAGGTGAACTGGGAGATGCTGGACAAGTCGCGGTTCTTCGTCCTCGGCGC
GGCGCTCTTCTCGGGCGTCTCCGCGGCGCTGTACCCGGCCGTCGTGGTCAAGACGCACCT
GCAGGTGGCGCCGCCGNCACAGGCGGNCACCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4716#0      ATCCCTCCCTTTGATCTTCCTTTTTCCTTTTTGTTTTCTTGCGATCGCCGGAGTTGGTGC 60
consensus_4716#1      ------------------------------------------------------------
                                                                                  

consensus_4716#0      CGTCGGTGACCGGGGTTTTTTGGTTGTTCGCCGGAGATGGTTCATCTGGTCGTGGCTTGA 120
consensus_4716#1      ------------------------------------------------------------
                                                                                  

consensus_4716#0      GTTGTTTGGATCTGGATTTGGTAGGTGAGTAGTAGTACTAAGGTGTTTGGAAGGCGAGGG 180
consensus_4716#1      ------------------------------------------------------------
                                                                                  

consensus_4716#0      TGGAAGGATGAGCTTTGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCNGCNGCNGC 240
consensus_4716#1      ---------------TGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCGGCGGCGGC 45
                                     ************************************ ** ** **

consensus_4716#0      ANTNGANGATCCGGCNGCTGCAGGNAG-GNTGAACTGGGAGATGCTGGACAAGTCGCGGT 299
consensus_4716#1      CGATGAG-ATCCGGCGGCTGCCGGCGGAGGTGAACTGGGAGATGCTGGACAAGTCGCGGT 104
                          **  ******* ***** **  * * ******************************

consensus_4716#0      TCTTCGTCCTCGGCNCNGCGCTCTTCTCGAGCNTCTCCGCNGCGCTGTACCCNGCCGTCG 359
consensus_4716#1      TCTTCGTCCTCGGCGCGGCGCTCTTCTCGGGCGTCTCCGCGGCGCTGTACCCGGCCGTCG 164
                      ************** * ************ ** ******* *********** *******

consensus_4716#0      TGGTCAAGACGCACCTNCAGGTTGC------------------------ 384
consensus_4716#1      TGGTCAAGACGCACCTGCAGGTGGCGCCGCCGNCACAGGCGGNCACCGC 213
                      **************** ***** **