cluster # 4719

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Oryza sativa
cluster # 4719 cluster # 4719 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4719#0 length = 1389 sequences # 2

consensus_4719#1 length = 365 sequences # 1

consensusID : consensus_4719#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1389
fasta sequence

                              [CCACTCCACTCACTGGAACTGGAAGCTTACGAGTGTTCGTCCAATGCCACGGCGTGCCGCTCTCGCCATGATGAACGTGGTGGCCATCGGGCTCGTGCTCTCCACCCTGGCCGCGGCCGGCGTGTGGTCGCCGGCGCCGACGCCACCGCCGTCCACGGCCGGCGAGCACGTCGTCCGGGAGGGACGCCGCGTGGTCATCGTCGAGTACGAGCGGGAGCACCCGCTGTACCCCGGCGACGCCGTGAAGGAGACGCACGTCCTGCCCCCTGACTCCCTCGACGGCGGCGAGGGCAGGCTCACGGACAAGGCCAGGGGCGCAGTCTCCGACGCGGCCGACAGGGTGGCCGACGCGGCGGAGGGCGGCAAGGAGAAGATGTCCGACGCCAAGGAGAGCGCGACGGGGAAGGTGTTCGGCGCGGTGAAGCGGTGCAAGGACAGGCTCTGCGGCGCGGCCAGGGAGGCGGAGGAGGGCGCGAAGGACAAGGCGTCGGCAGGCGAGCATGGTGCAGAGCAAGCTGTTCCCGATGTACTTCCGCGCCGTGGCGTACGGCGTCGGCCTCGCGCTCGCGGCGCACCTGCTCGGCCGCGAGCGCAGCTCCCTCGCCGCGCGCGCCCAGAGCGTCAACCTCCTCGCCGCGCTCGCCCTGGTCCTCGCCAACATGCTGCTCCTGGAGCCAAAAGCCACCAAAGTGATGTTCGAGAGGATGAAGGTGGAGAAGGAGGAAGGCAGGGGGAGGGACATGGCCGACATCGTCGACCCGCCAACGGTCACCGTCGCGGCGGGCAACACGGCCACCACCACCACCGTTCCCACGGCGGCGGCGCGCAAGCCGGCAGGCAACAACAATATGGCGGCGAAGTCGGCGGCGGCGGCGGCGCCGGTGGACGAGCAGACGTCCAAGAGCCGGGTGGCGACGCTGAACCAGCGGCTCAAGAAGCTGAACGGCTACTCGTCTCTGTGCAACGTGCTGTGCCTGATGGCGCTGACGTGGCACCTCGTGCACCTGGCACGTCGCCTCCAGATAGCCAGCGTCTGCTAGGCTCAAAACTCTTCGTCGTCCGTGTCGTTTGCTGTGAATCTGACATGCTGTAGCTTCTTGTAGTTTTTACCGTTTTAGTTCAGGCAGTTGTCATGGCGTCTGATCTGTTCGTATGTATCAATGTACTTGCTTAGGTATATTTCGTCGACGTAAAAACAGTAGCATGTCGATCTGCTGTTGTTTGTAGTTTCCTGCAGTGTTCTTGCAGGTTGGGATGTAGCTCAAAACTGCTGCATTTCGGACACGACGTCCGTTGTTGGCTTGTTTTAGCTGGGATGAATGTAACTGGAAACCCCTAATCTGTTTTATCACGCGCGATCGATCGTTGCATCGACCGTTCATAAAAAAA]

[+] EMBL AK063725             [CCACTCCACTCACTGGAACTGGAAGCTTACGAGTGTTCGTCCAATGCCACGGCGTGCCGCTCTCGCCATGATGAACGTGGTGGCCATCGGGCTCGTGCTCTCCACCCTGGCCGCGGCCGGCGTGTGGTCGCCGGCGCCGACGCCACCGCCGTCCACGGCCGGCGAGCACGTCGTCCGGGAGGGACGCCGCGTGGTCATCGTCGAGTACGAGCGGGAGCACCCGCTGTACCCCGGCGACGCCGTGAAGGAGACGCACGTCCTGCCCCCTGACTCCCTCGACGGCGGCGAGGGCAGGCTCACGGACAAGGCCAGGGGCGCAGTCTCCGACGCGGCCGACAGGGTGGCCGACGCGGCGGAGGGCGGCAAGGAGAAGATGTCCGACGCCAAGGAGAGCGCGACGGGGAAGGTGTTCGGCGCGGTGAAGCGGTGCAAGGACAGGCTCTGCGGCGCGGCCAGGGAGGCGGAGGAGGGCGCGAAGGACAAGGCGTCGGCAGGCGAGCATGGTGCAGAGCAAGCTGTTCCCGATGTACTTCCGCGCCGTGGCGTACGGCGTCGGCCTCGCGCTCGCGGCGCACCTGCTCGGCCGCGAGCGCAGCTCCCTCGCCGCGCGCGCCCAGAGCGTCAACCTCCTCGCCGCGCTCGCCCTGGTCCTCGCCAACATGCTGCTCCTGGAGCCAAAAGCCACCAAAGTGATGTTCGAGAGGATGAAGGTGGAGAAGGAGGAAGGCAGGGGGAGGGACATGGCCGACATCGTCGACCCGCCAACGGTCACCGTCGCGGCGGGCAACACGGCCACCACCACCACCGTTCCCACGGCGGCGGCGCGCAAGCCGGCAGGCAACAACAATATGGCGGCGAAGTCGGCGGCGGCGGCGGCGCCGGTGGACGAGCAGACGTCCAAGAGCCGGGTGGCGACGCTGAACCAGCGGCTCAAGAAGCTGAACGGCTACTCGTCTCTGTGCAACGTGCTGTGCCTGATGGCGCTGACGTGGCACCTCGTGCACCTGGCACGTCGCCTCCAGATAGCCAGCGTCTGCTAGGCTCAAAACTCTTCGTCGTCCGTGTCGTTTGCTGTGAATCTGACATGCTGTAGCTTCTTGTAGTTTTTACCGTTTTAGTTCAGGCAGTTGTCATGGCGTCTGATCTGTTCGTATGTATCAATGTACTTGCTTAGGTATATTTCGTCGACGTAAAAACAGTAGCATGTCGATCTGCTGTTGTTTGTAGTTTCCTGCAGTGTTCTTGCAGGTTGGGATGTAGCTCAAAACTGCTGCATTTCGGACACGACGTCCGTTGTTGGCTTGTTTTAGCTGGGATGAATGTAACTGGAAACCCCT                                                    ]
[+] EMBL CF315884             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGCCAGCGTCTGCTAGGCTCAAAACTCTTCGTCGTCCGTGTCGTTTGCTGTGAATTTGACATGCTGTAGCTTCTTGTAGTTTTTACCGTTTTAGTTCAGGCAGTTGTCATGGCGTCTGATCTGTTCGTATGTATCAATGTACTTGCTTAGGTATATTTCGTCGACGTAAAAACAGTAGCATGTCGATCTGCTGTTGTTTGTAGTTTCCTGCAGTGTTCTTGCAGGTTGGGATGTAGCTCAAAACTGCTGCATTTCGGACACGACGTCCGTTGTTGGCTTGTTTTAGCTGGGATGAATGTAACTGGAAACCCCTAATCTGTTTTATCACGCGCGATCGATCGTTGCATCGACCGTTCATAAAAAAA]




>consensus_4719#0
CCACTCCACTCACTGGAACTGGAAGCTTACGAGTGTTCGTCCAATGCCACGGCGTGCCGC
TCTCGCCATGATGAACGTGGTGGCCATCGGGCTCGTGCTCTCCACCCTGGCCGCGGCCGG
CGTGTGGTCGCCGGCGCCGACGCCACCGCCGTCCACGGCCGGCGAGCACGTCGTCCGGGA
GGGACGCCGCGTGGTCATCGTCGAGTACGAGCGGGAGCACCCGCTGTACCCCGGCGACGC
CGTGAAGGAGACGCACGTCCTGCCCCCTGACTCCCTCGACGGCGGCGAGGGCAGGCTCAC
GGACAAGGCCAGGGGCGCAGTCTCCGACGCGGCCGACAGGGTGGCCGACGCGGCGGAGGG
CGGCAAGGAGAAGATGTCCGACGCCAAGGAGAGCGCGACGGGGAAGGTGTTCGGCGCGGT
GAAGCGGTGCAAGGACAGGCTCTGCGGCGCGGCCAGGGAGGCGGAGGAGGGCGCGAAGGA
CAAGGCGTCGGCAGGCGAGCATGGTGCAGAGCAAGCTGTTCCCGATGTACTTCCGCGCCG
TGGCGTACGGCGTCGGCCTCGCGCTCGCGGCGCACCTGCTCGGCCGCGAGCGCAGCTCCC
TCGCCGCGCGCGCCCAGAGCGTCAACCTCCTCGCCGCGCTCGCCCTGGTCCTCGCCAACA
TGCTGCTCCTGGAGCCAAAAGCCACCAAAGTGATGTTCGAGAGGATGAAGGTGGAGAAGG
AGGAAGGCAGGGGGAGGGACATGGCCGACATCGTCGACCCGCCAACGGTCACCGTCGCGG
CGGGCAACACGGCCACCACCACCACCGTTCCCACGGCGGCGGCGCGCAAGCCGGCAGGCA
ACAACAATATGGCGGCGAAGTCGGCGGCGGCGGCGGCGCCGGTGGACGAGCAGACGTCCA
AGAGCCGGGTGGCGACGCTGAACCAGCGGCTCAAGAAGCTGAACGGCTACTCGTCTCTGT
GCAACGTGCTGTGCCTGATGGCGCTGACGTGGCACCTCGTGCACCTGGCACGTCGCCTCC
AGATAGCCAGCGTCTGCTAGGCTCAAAACTCTTCGTCGTCCGTGTCGTTTGCTGTGAATC
TGACATGCTGTAGCTTCTTGTAGTTTTTACCGTTTTAGTTCAGGCAGTTGTCATGGCGTC
TGATCTGTTCGTATGTATCAATGTACTTGCTTAGGTATATTTCGTCGACGTAAAAACAGT
AGCATGTCGATCTGCTGTTGTTTGTAGTTTCCTGCAGTGTTCTTGCAGGTTGGGATGTAG
CTCAAAACTGCTGCATTTCGGACACGACGTCCGTTGTTGGCTTGTTTTAGCTGGGATGAA
TGTAACTGGAAACCCCTAATCTGTTTTATCACGCGCGATCGATCGTTGCATCGACCGTTC
ATAAAAAAA

consensusID : consensus_4719#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence

                              [GCCAGCGTCTGCTAGGCTCAAAACTTTTCGTCGTCCGTGTCGTTTGCTGTGAATTTGACATGCTGTAGCTTCTTGTAGTTTTTACCGTTTTAGTTCAGGCAGTTGTCATGGCGTCTGATCTGTTCGTATGTATCAATGTACTTGCTTAGGTATATTTCGTCGACGTAAAAACAGTAGCATGTCGATCTGCTGTTGTTTGTAGTTTCCTGCAGTGTTCTTGCAGGTTGGGATGTAGCTCAAAACTGCTGCATTTCGGACACGACGTCCGTTGTTGGCTTGTTTTAGCTGGGATGAATGTAACTGGAAACCCATAATATGTTTAATCACGAAAAATAAAAAAAAAAAAAAACAAATAAAAAAAAAAA]

[-] EMBL CF315883             [GCCAGCGTCTGCTAGGCTCAAAACTTTTCGTCGTCCGTGTCGTTTGCTGTGAATTTGACATGCTGTAGCTTCTTGTAGTTTTTACCGTTTTAGTTCAGGCAGTTGTCATGGCGTCTGATCTGTTCGTATGTATCAATGTACTTGCTTAGGTATATTTCGTCGACGTAAAAACAGTAGCATGTCGATCTGCTGTTGTTTGTAGTTTCCTGCAGTGTTCTTGCAGGTTGGGATGTAGCTCAAAACTGCTGCATTTCGGACACGACGTCCGTTGTTGGCTTGTTTTAGCTGGGATGAATGTAACTGGAAACCCATAATATGTTTAATCACGAAAAATAAAAAAAAAAAAAAACAAATAAAAAAAAAAA]




>consensus_4719#1
GCCAGCGTCTGCTAGGCTCAAAACTTTTCGTCGTCCGTGTCGTTTGCTGTGAATTTGACA
TGCTGTAGCTTCTTGTAGTTTTTACCGTTTTAGTTCAGGCAGTTGTCATGGCGTCTGATC
TGTTCGTATGTATCAATGTACTTGCTTAGGTATATTTCGTCGACGTAAAAACAGTAGCAT
GTCGATCTGCTGTTGTTTGTAGTTTCCTGCAGTGTTCTTGCAGGTTGGGATGTAGCTCAA
AACTGCTGCATTTCGGACACGACGTCCGTTGTTGGCTTGTTTTAGCTGGGATGAATGTAA
CTGGAAACCCATAATATGTTTAATCACGAAAAATAAAAAAAAAAAAAAACAAATAAAAAA
AAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4719#0      CCACTCCACTCACTGGAACTGGAAGCTTACGAGTGTTCGTCCAATGCCACGGCGTGCCGC 60
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      TCTCGCCATGATGAACGTGGTGGCCATCGGGCTCGTGCTCTCCACCCTGGCCGCGGCCGG 120
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      CGTGTGGTCGCCGGCGCCGACGCCACCGCCGTCCACGGCCGGCGAGCACGTCGTCCGGGA 180
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      GGGACGCCGCGTGGTCATCGTCGAGTACGAGCGGGAGCACCCGCTGTACCCCGGCGACGC 240
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      CGTGAAGGAGACGCACGTCCTGCCCCCTGACTCCCTCGACGGCGGCGAGGGCAGGCTCAC 300
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      GGACAAGGCCAGGGGCGCAGTCTCCGACGCGGCCGACAGGGTGGCCGACGCGGCGGAGGG 360
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      CGGCAAGGAGAAGATGTCCGACGCCAAGGAGAGCGCGACGGGGAAGGTGTTCGGCGCGGT 420
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      GAAGCGGTGCAAGGACAGGCTCTGCGGCGCGGCCAGGGAGGCGGAGGAGGGCGCGAAGGA 480
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      CAAGGCGTCGGCAGGCGAGCATGGTGCAGAGCAAGCTGTTCCCGATGTACTTCCGCGCCG 540
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      TGGCGTACGGCGTCGGCCTCGCGCTCGCGGCGCACCTGCTCGGCCGCGAGCGCAGCTCCC 600
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      TCGCCGCGCGCGCCCAGAGCGTCAACCTCCTCGCCGCGCTCGCCCTGGTCCTCGCCAACA 660
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      TGCTGCTCCTGGAGCCAAAAGCCACCAAAGTGATGTTCGAGAGGATGAAGGTGGAGAAGG 720
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      AGGAAGGCAGGGGGAGGGACATGGCCGACATCGTCGACCCGCCAACGGTCACCGTCGCGG 780
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      CGGGCAACACGGCCACCACCACCACCGTTCCCACGGCGGCGGCGCGCAAGCCGGCAGGCA 840
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      ACAACAATATGGCGGCGAAGTCGGCGGCGGCGGCGGCGCCGGTGGACGAGCAGACGTCCA 900
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      AGAGCCGGGTGGCGACGCTGAACCAGCGGCTCAAGAAGCTGAACGGCTACTCGTCTCTGT 960
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      GCAACGTGCTGTGCCTGATGGCGCTGACGTGGCACCTCGTGCACCTGGCACGTCGCCTCC 1020
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      AGATAGCCAGCGTCTGCTAGGCTCAAAACTCTTCGTCGTCCGTGTCGTTTGCTGTGAATC 1080
consensus_4719#1      -----GCCAGCGTCTGCTAGGCTCAAAACTTTTCGTCGTCCGTGTCGTTTGCTGTGAATT 55
                           ************************* **************************** 

consensus_4719#0      TGACATGCTGTAGCTTCTTGTAGTTTTTACCGTTTTAGTTCAGGCAGTTGTCATGGCGTC 1140
consensus_4719#1      TGACATGCTGTAGCTTCTTGTAGTTTTTACCGTTTTAGTTCAGGCAGTTGTCATGGCGTC 115
                      ************************************************************

consensus_4719#0      TGATCTGTTCGTATGTATCAATGTACTTGCTTAGGTATATTTCGTCGACGTAAAAACAGT 1200
consensus_4719#1      TGATCTGTTCGTATGTATCAATGTACTTGCTTAGGTATATTTCGTCGACGTAAAAACAGT 175
                      ************************************************************

consensus_4719#0      AGCATGTCGATCTGCTGTTGTTTGTAGTTTCCTGCAGTGTTCTTGCAGGTTGGGATGTAG 1260
consensus_4719#1      AGCATGTCGATCTGCTGTTGTTTGTAGTTTCCTGCAGTGTTCTTGCAGGTTGGGATGTAG 235
                      ************************************************************

consensus_4719#0      CTCAAAACTGCTGCATTTCGGACACGACGTCCGTTGTTGGCTTGTTTTAGCTGGGATGAA 1320
consensus_4719#1      CTCAAAACTGCTGCATTTCGGACACGACGTCCGTTGTTGGCTTGTTTTAGCTGGGATGAA 295
                      ************************************************************

consensus_4719#0      TGTAACTGGAAACCCCTAATCTGTTTTATCACGCGCGATCGATCGTTGCATCGACCGTTC 1380
consensus_4719#1      TGTAACTGGAAACCCATAATATGTTTAATCACGAAAAATAAAAAAAAAAAAAAACAAATA 355
                      *************** **** ***** ******    **  *       *   **   * 

consensus_4719#0      ATAAAAAAA- 1389
consensus_4719#1      AAAAAAAAAA 365
                      * *******