These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4724#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1884 fasta sequence [CGCCCGCCTTCTCCCCTATCTATCATTCTATCCCGCCCGCTTCCTTCTCCCCCGCGGCCGGACTGCAACTGTAACCCAATTCCTCCTCCCTCCTCGATCACCATGGAGGGAGTTGGCGGCGGCGGCGGCGGTGAGGAGTGGCTGCGGCCGATGGACGCGGAGCAGCTGCGGGAGTGCGGGCACCGGATGGTGGATTTCGTCGCCGACTACTACAAATCCATCGAGGCCTTCCCCGTCCTCAGCCAAGTCCAGCCAGGATATCTGAAGGAAGTTCTTCCAGATTCAGCCCCAAGACAACCTGATACTTTGGATTCCCTTTTTGATGATATTCAACAAAAAATAATACCAGGAGTAACGCACTGGCAAAGTCCAAATTATTTTGCTTACTATCCTTCAAATAGCAGCACTGCTGGATTCCTGGGGGAGATGCTTAGTGCTGCCTTTAACATTGTTGGCTTCAGTTGGATAACCTCTCCTGCTGCTACTGAGCTAGAGGTTATAGTCTTAGACTGGTTTGCAAAAATGCTCCAGCTTCCAAGCCAGTTTCTGTCAACTGCTCTTGGTGGAGGAGTAATACAAGGTACTGCCAGTGAAGCTGTTCTTGTTGCACTATTGGCTGCACGAGATAGAGCTTTAAAGAAGCATGGGAAGCATTCCCTTGAAAAGTTAGTAGTTTATGCATCTGACCAGACACATTCTGCTCTACAAAAGGCATGCCAGATTGCAGGAATTTTCTCAGAGAATGTTAGGGTTGTAATTGCTGATTGTAATAAGAACTACGCCGTTGCCCCTGAGGCAGTTAGTGAGGCGCTTTCCATAGACCTGTCATCTGGTTTGATACCATTTTTCATCTGTGCAACAGTAGGTACAACATCATCGTCAGCTGTGGACCCCCTGCCTGAACTAGGACAGATAGCAAAGTCCAATGACATGTGGTTCCATATTGATGCCGCATATGCTGGAAGTGCTTGTATATGCCCAGAGTACCGACACCACCTCAATGGAGTGGAAGAAGCTGATTCGTTTAATATGAATGCCCACAAATGGTTCCTCACTAACTTCGATTGTTCCTTGCTATGGGTTAAGGACAGGAGTTTTCTCATACAATCATTGTCTACGAATCCAGAGTTTCTCAAAAACAAGGCTTCCCAAGCTAATTCAGTTGTTGATTTCAAAGATTGGCAAATTCCACTTGGACGACGCTTTAGATCACTTAAGCTATGGATGGTCTTGAGACTTTATGGTGTGGACAACCTACAAAGCTATATCCGGAAACACATACATTTGGCTGAACATTTTGAGCAACTTTTATTATCTGATTCAAGATTTGAGGTAGTGACTCCAAGGACTTTTTCACTTGTTTGTTTCCGACTTGTGCCTCCCACTTCTGACCATGAAAATGGACGTAAATTGAATTACGATATGATGGATGGTGTAAATTCAAGTGGAAAGATCTTCCTATCTCACACGGTTCTTTCAGGTAAGTTCGTCTTGAGATTTGCAGTAGGAGCGCCACTTACAGAGGAGCGACACGTGGATGCCGCTTGGAAGCTTCTACGAGATGAGGCCACCAAGGTCTTGGGGAAAATGGTGTAGATAAGTGAATACCGCTCACTGATTCAGCTCATTGTTTGCCCTTCGAGTATTGAAGGTGCCAAAGTTCATACAAAAAGTTTCTGTTAAGGACAATACACGATAGCATAATTTATTCAGTTGTGAAACAGAAATACTGAATACTTTCTATGATTCTTTTAGTGGGTTAGGTCGTTTGATCGACCTGCAATTTTTTTCGAGTTGATATTAAACTCCCTGCATTATGGATGGTAGTGTGAGGTGGCATGCAGTATAACATTTAACATACAAATTTTACCAAGATTACGCAGC] [+] EMBL AK103253 [CGCCCGCCTTCTCCCCTATCTATCATTCTATCCCGCCCGCTTCCTTCTCCCCCGCGGCCGGACTGCAACTGTAACCCAATTCCTCCTCCCTCCTCGATCACCATGGAGGGAGTTGGCGGCGGCGGCGGCGGTGAGGAGTGGCTGCGGCCGATGGACGCGGAGCAGCTGCGGGAGTGCGGGCACCGGATGGTGGATTTCGTCGCCGACTACTACAAATCCATCGAGGCCTTCCCCGTCCTCAGCCAAGTCCAGCCAGGATATCTGAAGGAAGTTCTTCCAGATTCAGCCCCAAGACAACCTGATACTTTGGATTCCCTTTTTGATGATATTCAACAAAAAATAATACCAGGAGTAACGCACTGGCAAAGTCCAAATTATTTTGCTTACTATCCTTCAAATAGCAGCACTGCTGGATTCCTGGGGGAGATGCTTAGTGCTGCCTTTAACATTGTTGGCTTCAGTTGGATAACCTCTCCTGCTGCTACTGAGCTAGAGGTTATAGTCTTAGACTGGTTTGCAAAAATGCTCCAGCTTCCAAGCCAGTTTCTGTCAACTGCTCTTGGTGGAGGAGTAATACAAGGTACTGCCAGTGAAGCTGTTCTTGTTGCACTATTGGCTGCACGAGATAGAGCTTTAAAGAAGCATGGGAAGCATTCCCTTGAAAAGTTAGTAGTTTATGCATCTGACCAGACACATTCTGCTCTACAAAAGGCATGCCAGATTGCAGGAATTTTCTCAGAGAATGTTAGGGTTGTAATTGCTGATTGTAATAAGAACTACGCCGTTGCCCCTGAGGCAGTTAGTGAGGCGCTTTCCATAGACCTGTCATCTGGTTTGATACCATTTTTCATCTGTGCAACAGTAGGTACAACATCATCGTCAGCTGTGGACCCCCTGCCTGAACTAGGACAGATAGCAAAGTCCAATGACATGTGGTTCCATATTGATGCCGCATATGCTGGAAGTGCTTGTATATGCCCAGAGTACCGACACCACCTCAATGGAGTGGAAGAAGCTGATTCGTTTAATATGAATGCCCACAAATGGTTCCTCACTAACTTCGATTGTTCCTTGCTATGGGTTAAGGACAGGAGTTTTCTCATACAATCATTGTCTACGAATCCAGAGTTTCTCAAAAACAAGGCTTCCCAAGCTAATTCAGTTGTTGATTTCAAAGATTGGCAAATTCCACTTGGACGACGCTTTAGATCACTTAAGCTATGGATGGTCTTGAGACTTTATGGTGTGGACAACCTACAAAGCTATATCCGGAAACACATACATTTGGCTGAACATTTTGAGCAACTTTTATTATCTGATTCAAGATTTGAGGTAGTGACTCCAAGGACTTTTTCACTTGTTTGTTTCCGACTTGTGCCTCCCACTTCTGACCATGAAAATGGACGTAAATTGAATTACGATATGATGGATGGTGTAAATTCAAGTGGAAAGATCTTCCTATCTCACACGGTTCTTTCAGGTAAGTTCGTCTTGAGATTTGCAGTAGGAGCGCCACTTACAGAGGAGCGACACGTGGATGCCGCTTGGAAGCTTCTACGAGATGAGGCCACCAAGGTCTTGGGGAAAATGGTGTAGATAAGTGAATACCGCTCACTGATTCAGCTCATTGTTTGCCCTTCGAGTATTGAAGGTGCCAAAGTTCATACAAAAAGTTTCTGTTAAGGACAATACACGATAGCATAATTTATTCAGTTGTGAAACAGAAATACTGAATACTTTCTATGATTCTTTTAGTGGGTTAGGTCGTTTGATCGACCTGCA ] [+] EMBL AK060367 [ ATCATTGTCTACGAATCCAGAGTTTCTCAAAAACAAGGCTTCCCAAGCTAATTCAGTTGTTGATTTCAAAGATTGGCAAATTCCACTTGGACGACGCTTTAGATCACTTAAGCTATGGATGGTCTTGAGACTTTATGGTGTGGACAACCTACAAAGCTATATCCGGAAACACATACATTTGGCTGAACATTTTGAGCAACTTTTATTATCTGATTCAAGATTTGAGGTAGTGACTCCAAGGACTTTTTCACTTGTTTGTTTCCGACTTGTGCCTCCCACTTCTGACCATGAAAATGGACGTAAATTGAATTACGATATGATGGATGGTGTAAATTCAAGTGGAAAGATCTTCCTATCTCACACGGTTCTTTCAGGTAAGTTCGTCTTGAGATTTGCAGTAGGAGCGCCACTTACAGAGGAGCGACACGTGGATGCCGCTTGGAAGCTTCTACGAGATGAGGCCACCAAGGTCTTGGGGAAAATGGTGTAGATAAGTGAATACCGCTCACTGATTCAGCTCATTGTTTGCCCTTCGAGTATTGAAGGTGCCAAAGTTCATACAAAAAGTTTCTGTTAAGGACAATACACGATAGCATAATTTATTCAGTTGTGAAACAGAAATACTGAATACTTTCTATGATTCTTTTAGTGGGTTAGGTCGTTTGATCGACCTGCAATTTTTTTCGAGTTGATATTAAACTCCCTGCATTATGGATGGTAGTGTGAGGTGGCATGCAGTATAACATTTAACATACAAATTTTACCAAGATTACGCAGC] consensusID : consensus_4724#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [TAAAAATTAANTTCCGTTTAATNTGGGGGNATTGGGGGGAAAAANTTTTCAAACNGGGAANNGGTGGCCCGNGGAAAACCCANGTTGGAAAAAAACCCNTCAAAAANGGGGACAAAAGGGGGGNTTCCCCCCCCCGNGGGGCGCCGTTTTAAGGAATAGNGNAATCCCCCCNGGGCGCCAGGGATTTGGGCANGANTTTGNNCCGGAATTNGGCANGGNGTGTAAAATTCAAAGGGGAAAAATTNTTCCTANTNTCAACACGGTTCTTTTCAGGTAAGTTTCGTTCTTGGAGATTTNCCAGTAGGGAGCGCCAACTAACAAGAGGAGCGACACGTGGATGCCGCTTGGAAGCTTTCTACGAGATGAGGCCACCAAGGTCTTGGGGAAAATGGTGTAGATAAGTGAATACCGCTCACTGATTCAGCTCATTGTTTGCCCTTCGAGTATTGAAGGTGCCAAAGTTCATACAAAAAGTTTCTGTTAAGGACAATACACGATAGCATAATTTATTCAGTTGTGAAACAGAAATACTGAATACTTTCTATGATTCTTTTAGTGGGTTAGGTCGTTTGATCGACCTGCAATTTTTTTCGA] [-] EMBL BE229135 [TAAAAATTAANTTCCGTTTAATNTGGGGGNATTGGGGGGAAAAANTTTTCAAACNGGGAANNGGTGGCCCGNGGAAAACCCANGTTGGAAAAAAACCCNTCAAAAANGGGGACAAAAGGGGGGNTTCCCCCCCCCGNGGGGCGCCGTTTTAAGGAATAGNGNAATCCCCCCNGGGCGCCAGGGATTTGGGCANGANTTTGNNCCGGAATTNGGCANGGNGTGTAAAATTCAAAGGGGAAAAATTNTTCCTANTNTCAACACGGTTCTTTTCAGGTAAGTTTCGTTCTTGGAGATTTNCCAGTAGGGAGCGCCAACTAACAAGAGGAGCGACACGTGGATGCCGCTTGGAAGCTTTCTACGAGATGAGGCCACCAAGGTCTTGGGGAAAATGGTGTAGATAAGTGAATACCGCTCACTGATTCAGCTCATTGTTTGCCCTTCGAGTATTGAAGGTGCCAAAGTTCATACAAAAAGTTTCTGTTAAGGACAATACACGATAGCATAATTTATTCAGTTGTGAAACAGAAATACTGAATACTTTCTATGATTCTTTTAGTGGGTTAGGTCGTTTGATCGACCTGCAATTTTTTTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4724#0 CGCCCGCCTTCTCCCCTATCTATCATTCTATCCCGCCCGCTTCCTTCTCCCCCGCGGCCG 60 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 GACTGCAACTGTAACCCAATTCCTCCTCCCTCCTCGATCACCATGGAGGGAGTTGGCGGC 120 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 GGCGGCGGCGGTGAGGAGTGGCTGCGGCCGATGGACGCGGAGCAGCTGCGGGAGTGCGGG 180 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 CACCGGATGGTGGATTTCGTCGCCGACTACTACAAATCCATCGAGGCCTTCCCCGTCCTC 240 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 AGCCAAGTCCAGCCAGGATATCTGAAGGAAGTTCTTCCAGATTCAGCCCCAAGACAACCT 300 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 GATACTTTGGATTCCCTTTTTGATGATATTCAACAAAAAATAATACCAGGAGTAACGCAC 360 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 TGGCAAAGTCCAAATTATTTTGCTTACTATCCTTCAAATAGCAGCACTGCTGGATTCCTG 420 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 GGGGAGATGCTTAGTGCTGCCTTTAACATTGTTGGCTTCAGTTGGATAACCTCTCCTGCT 480 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 GCTACTGAGCTAGAGGTTATAGTCTTAGACTGGTTTGCAAAAATGCTCCAGCTTCCAAGC 540 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 CAGTTTCTGTCAACTGCTCTTGGTGGAGGAGTAATACAAGGTACTGCCAGTGAAGCTGTT 600 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 CTTGTTGCACTATTGGCTGCACGAGATAGAGCTTTAAAGAAGCATGGGAAGCATTCCCTT 660 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 GAAAAGTTAGTAGTTTATGCATCTGACCAGACACATTCTGCTCTACAAAAGGCATGCCAG 720 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 ATTGCAGGAATTTTCTCAGAGAATGTTAGGGTTGTAATTGCTGATTGTAATAAGAACTAC 780 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 GCCGTTGCCCCTGAGGCAGTTAGTGAGGCGCTTTCCATAGACCTGTCATCTGGTTTGATA 840 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 CCATTTTTCATCTGTGCAACAGTAGGTACAACATCATCGTCAGCTGTGGACCCCCTGCCT 900 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 GAACTAGGACAGATAGCAAAGTCCAATGACATGTGGTTCCATATTGATGCCGCATATGCT 960 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 GGAAGTGCTTGTATATGCCCAGAGTACCGACACCACCTCAATGGAGTGGAAGAAGCTGAT 1020 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 TCGTTTAATATGAATGCCCACAAATGGTTCCTCACTAACTTCGATTGTTCCTTGCTATGG 1080 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 GTTAAGGACAGGAGTTTTCTCATACAATCATTGTCTACGAATCCAGAGTTTCTCAAAAAC 1140 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 AAGGCTTCCCAAGCTAATTCAGTTGTTGATTTCAAAGATTGGCAAATTCCACTTGGACGA 1200 consensus_4724#1 ------------------------------------------------------------ consensus_4724#0 CGCTTTAGATCACTTAAGCTATGGATGGTCTTGAGACTTTATGGTGTGGACAACCTACAA 1260 consensus_4724#1 -----TAAA--AATTAANTTCCGTTTAATNTGGGGGNATTGGGGGGAAAA-ANTTTTCAA 52 ** * * **** * * * * * * * ** ** * * * * *** consensus_4724#0 AGCTATATCCGGAAACACATACATTTGGCTGAACATTTTGAGCAACTTTTATTATCTGAT 1320 consensus_4724#1 ACNGGGAANNGGTGGCCCGNGGAAA-ACCCANGTTGGAAAAAAACCCNTCAAAAANGGGG 111 * * ** * * * * * * * * * * * consensus_4724#0 TCAAGATTTGAGGTAGTGACTCCAAGGACTTTTTCACTTGTTTGTTTCCGACTTGTGCCT 1380 consensus_4724#1 ACAAAAGGGGGGNTTCCCCCCCCCGNGGGGCGCCGTTTTAAGGAATAGNGNAAT---CCC 168 *** * * * * * ** * ** * * * ** consensus_4724#0 CCCACTTCTGACCATGAAAATGGACGTAAATT-GAATTACGATATGATGGATGGTGTAAA 1439 consensus_4724#1 CCCNGGGC--GCCAGGGATTTGGGCANGANTTTGNNCCGGAATTNGGCANGGNGTGTAAA 226 *** * *** * * *** * * ** * ** * ******* consensus_4724#0 -TTCAAGTGGAAAGA--TCTTCCTATCTC--ACACGGTTCTTT-CAGGTAAGTT-CGTCT 1492 consensus_4724#1 ATTCAAAGGGGAAAAATTNTTCCTANTNTCAACACGGTTCTTTTCAGGTAAGTTTCGTTC 286 ***** ** ** * * ****** ************ ********** *** consensus_4724#0 T--GAGATTTGC-AGTAGG-AGCGCCACTTAC--AGAGGAGCGACACGTGGATGCCGCTT 1546 consensus_4724#1 TTGGAGATTTNCCAGTAGGGAGCGCCAACTAACAAGAGGAGCGACACGTGGATGCCGCTT 346 * ******* * ****** ******* ** ************************** consensus_4724#0 GGAAGCTT-CTACGAGATGAGGCCACCAAGGTCTTGGGGAAAATGGTGTAGATAAGTGAA 1605 consensus_4724#1 GGAAGCTTTCTACGAGATGAGGCCACCAAGGTCTTGGGGAAAATGGTGTAGATAAGTGAA 406 ******** *************************************************** consensus_4724#0 TACCGCTCACTGATTCAGCTCATTGTTTGCCCTTCGAGTATTGAAGGTGCCAAAGTTCAT 1665 consensus_4724#1 TACCGCTCACTGATTCAGCTCATTGTTTGCCCTTCGAGTATTGAAGGTGCCAAAGTTCAT 466 ************************************************************ consensus_4724#0 ACAAAAAGTTTCTGTTAAGGACAATACACGATAGCATAATTTATTCAGTTGTGAAACAGA 1725 consensus_4724#1 ACAAAAAGTTTCTGTTAAGGACAATACACGATAGCATAATTTATTCAGTTGTGAAACAGA 526 ************************************************************ consensus_4724#0 AATACTGAATACTTTCTATGATTCTTTTAGTGGGTTAGGTCGTTTGATCGACCTGCAATT 1785 consensus_4724#1 AATACTGAATACTTTCTATGATTCTTTTAGTGGGTTAGGTCGTTTGATCGACCTGCAATT 586 ************************************************************ consensus_4724#0 TTTTTCGAGTTGATATTAAACTCCCTGCATTATGGATGGTAGTGTGAGGTGGCATGCAGT 1845 consensus_4724#1 TTTTTCGA---------------------------------------------------- 594 ******** consensus_4724#0 ATAACATTTAACATACAAATTTTACCAAGATTACGCAGC 1884 consensus_4724#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||