|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4724#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1884 fasta sequence
[CGCCCGCCTTCTCCCCTATCTATCATTCTATCCCGCCCGCTTCCTTCTCCCCCGCGGCCGGACTGCAACTGTAACCCAATTCCTCCTCCCTCCTCGATCACCATGGAGGGAGTTGGCGGCGGCGGCGGCGGTGAGGAGTGGCTGCGGCCGATGGACGCGGAGCAGCTGCGGGAGTGCGGGCACCGGATGGTGGATTTCGTCGCCGACTACTACAAATCCATCGAGGCCTTCCCCGTCCTCAGCCAAGTCCAGCCAGGATATCTGAAGGAAGTTCTTCCAGATTCAGCCCCAAGACAACCTGATACTTTGGATTCCCTTTTTGATGATATTCAACAAAAAATAATACCAGGAGTAACGCACTGGCAAAGTCCAAATTATTTTGCTTACTATCCTTCAAATAGCAGCACTGCTGGATTCCTGGGGGAGATGCTTAGTGCTGCCTTTAACATTGTTGGCTTCAGTTGGATAACCTCTCCTGCTGCTACTGAGCTAGAGGTTATAGTCTTAGACTGGTTTGCAAAAATGCTCCAGCTTCCAAGCCAGTTTCTGTCAACTGCTCTTGGTGGAGGAGTAATACAAGGTACTGCCAGTGAAGCTGTTCTTGTTGCACTATTGGCTGCACGAGATAGAGCTTTAAAGAAGCATGGGAAGCATTCCCTTGAAAAGTTAGTAGTTTATGCATCTGACCAGACACATTCTGCTCTACAAAAGGCATGCCAGATTGCAGGAATTTTCTCAGAGAATGTTAGGGTTGTAATTGCTGATTGTAATAAGAACTACGCCGTTGCCCCTGAGGCAGTTAGTGAGGCGCTTTCCATAGACCTGTCATCTGGTTTGATACCATTTTTCATCTGTGCAACAGTAGGTACAACATCATCGTCAGCTGTGGACCCCCTGCCTGAACTAGGACAGATAGCAAAGTCCAATGACATGTGGTTCCATATTGATGCCGCATATGCTGGAAGTGCTTGTATATGCCCAGAGTACCGACACCACCTCAATGGAGTGGAAGAAGCTGATTCGTTTAATATGAATGCCCACAAATGGTTCCTCACTAACTTCGATTGTTCCTTGCTATGGGTTAAGGACAGGAGTTTTCTCATACAATCATTGTCTACGAATCCAGAGTTTCTCAAAAACAAGGCTTCCCAAGCTAATTCAGTTGTTGATTTCAAAGATTGGCAAATTCCACTTGGACGACGCTTTAGATCACTTAAGCTATGGATGGTCTTGAGACTTTATGGTGTGGACAACCTACAAAGCTATATCCGGAAACACATACATTTGGCTGAACATTTTGAGCAACTTTTATTATCTGATTCAAGATTTGAGGTAGTGACTCCAAGGACTTTTTCACTTGTTTGTTTCCGACTTGTGCCTCCCACTTCTGACCATGAAAATGGACGTAAATTGAATTACGATATGATGGATGGTGTAAATTCAAGTGGAAAGATCTTCCTATCTCACACGGTTCTTTCAGGTAAGTTCGTCTTGAGATTTGCAGTAGGAGCGCCACTTACAGAGGAGCGACACGTGGATGCCGCTTGGAAGCTTCTACGAGATGAGGCCACCAAGGTCTTGGGGAAAATGGTGTAGATAAGTGAATACCGCTCACTGATTCAGCTCATTGTTTGCCCTTCGAGTATTGAAGGTGCCAAAGTTCATACAAAAAGTTTCTGTTAAGGACAATACACGATAGCATAATTTATTCAGTTGTGAAACAGAAATACTGAATACTTTCTATGATTCTTTTAGTGGGTTAGGTCGTTTGATCGACCTGCAATTTTTTTCGAGTTGATATTAAACTCCCTGCATTATGGATGGTAGTGTGAGGTGGCATGCAGTATAACATTTAACATACAAATTTTACCAAGATTACGCAGC]
[+] EMBL AK103253 [CGCCCGCCTTCTCCCCTATCTATCATTCTATCCCGCCCGCTTCCTTCTCCCCCGCGGCCGGACTGCAACTGTAACCCAATTCCTCCTCCCTCCTCGATCACCATGGAGGGAGTTGGCGGCGGCGGCGGCGGTGAGGAGTGGCTGCGGCCGATGGACGCGGAGCAGCTGCGGGAGTGCGGGCACCGGATGGTGGATTTCGTCGCCGACTACTACAAATCCATCGAGGCCTTCCCCGTCCTCAGCCAAGTCCAGCCAGGATATCTGAAGGAAGTTCTTCCAGATTCAGCCCCAAGACAACCTGATACTTTGGATTCCCTTTTTGATGATATTCAACAAAAAATAATACCAGGAGTAACGCACTGGCAAAGTCCAAATTATTTTGCTTACTATCCTTCAAATAGCAGCACTGCTGGATTCCTGGGGGAGATGCTTAGTGCTGCCTTTAACATTGTTGGCTTCAGTTGGATAACCTCTCCTGCTGCTACTGAGCTAGAGGTTATAGTCTTAGACTGGTTTGCAAAAATGCTCCAGCTTCCAAGCCAGTTTCTGTCAACTGCTCTTGGTGGAGGAGTAATACAAGGTACTGCCAGTGAAGCTGTTCTTGTTGCACTATTGGCTGCACGAGATAGAGCTTTAAAGAAGCATGGGAAGCATTCCCTTGAAAAGTTAGTAGTTTATGCATCTGACCAGACACATTCTGCTCTACAAAAGGCATGCCAGATTGCAGGAATTTTCTCAGAGAATGTTAGGGTTGTAATTGCTGATTGTAATAAGAACTACGCCGTTGCCCCTGAGGCAGTTAGTGAGGCGCTTTCCATAGACCTGTCATCTGGTTTGATACCATTTTTCATCTGTGCAACAGTAGGTACAACATCATCGTCAGCTGTGGACCCCCTGCCTGAACTAGGACAGATAGCAAAGTCCAATGACATGTGGTTCCATATTGATGCCGCATATGCTGGAAGTGCTTGTATATGCCCAGAGTACCGACACCACCTCAATGGAGTGGAAGAAGCTGATTCGTTTAATATGAATGCCCACAAATGGTTCCTCACTAACTTCGATTGTTCCTTGCTATGGGTTAAGGACAGGAGTTTTCTCATACAATCATTGTCTACGAATCCAGAGTTTCTCAAAAACAAGGCTTCCCAAGCTAATTCAGTTGTTGATTTCAAAGATTGGCAAATTCCACTTGGACGACGCTTTAGATCACTTAAGCTATGGATGGTCTTGAGACTTTATGGTGTGGACAACCTACAAAGCTATATCCGGAAACACATACATTTGGCTGAACATTTTGAGCAACTTTTATTATCTGATTCAAGATTTGAGGTAGTGACTCCAAGGACTTTTTCACTTGTTTGTTTCCGACTTGTGCCTCCCACTTCTGACCATGAAAATGGACGTAAATTGAATTACGATATGATGGATGGTGTAAATTCAAGTGGAAAGATCTTCCTATCTCACACGGTTCTTTCAGGTAAGTTCGTCTTGAGATTTGCAGTAGGAGCGCCACTTACAGAGGAGCGACACGTGGATGCCGCTTGGAAGCTTCTACGAGATGAGGCCACCAAGGTCTTGGGGAAAATGGTGTAGATAAGTGAATACCGCTCACTGATTCAGCTCATTGTTTGCCCTTCGAGTATTGAAGGTGCCAAAGTTCATACAAAAAGTTTCTGTTAAGGACAATACACGATAGCATAATTTATTCAGTTGTGAAACAGAAATACTGAATACTTTCTATGATTCTTTTAGTGGGTTAGGTCGTTTGATCGACCTGCA ]
[+] EMBL AK060367 [ ATCATTGTCTACGAATCCAGAGTTTCTCAAAAACAAGGCTTCCCAAGCTAATTCAGTTGTTGATTTCAAAGATTGGCAAATTCCACTTGGACGACGCTTTAGATCACTTAAGCTATGGATGGTCTTGAGACTTTATGGTGTGGACAACCTACAAAGCTATATCCGGAAACACATACATTTGGCTGAACATTTTGAGCAACTTTTATTATCTGATTCAAGATTTGAGGTAGTGACTCCAAGGACTTTTTCACTTGTTTGTTTCCGACTTGTGCCTCCCACTTCTGACCATGAAAATGGACGTAAATTGAATTACGATATGATGGATGGTGTAAATTCAAGTGGAAAGATCTTCCTATCTCACACGGTTCTTTCAGGTAAGTTCGTCTTGAGATTTGCAGTAGGAGCGCCACTTACAGAGGAGCGACACGTGGATGCCGCTTGGAAGCTTCTACGAGATGAGGCCACCAAGGTCTTGGGGAAAATGGTGTAGATAAGTGAATACCGCTCACTGATTCAGCTCATTGTTTGCCCTTCGAGTATTGAAGGTGCCAAAGTTCATACAAAAAGTTTCTGTTAAGGACAATACACGATAGCATAATTTATTCAGTTGTGAAACAGAAATACTGAATACTTTCTATGATTCTTTTAGTGGGTTAGGTCGTTTGATCGACCTGCAATTTTTTTCGAGTTGATATTAAACTCCCTGCATTATGGATGGTAGTGTGAGGTGGCATGCAGTATAACATTTAACATACAAATTTTACCAAGATTACGCAGC]
consensusID : consensus_4724#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence
[TAAAAATTAANTTCCGTTTAATNTGGGGGNATTGGGGGGAAAAANTTTTCAAACNGGGAANNGGTGGCCCGNGGAAAACCCANGTTGGAAAAAAACCCNTCAAAAANGGGGACAAAAGGGGGGNTTCCCCCCCCCGNGGGGCGCCGTTTTAAGGAATAGNGNAATCCCCCCNGGGCGCCAGGGATTTGGGCANGANTTTGNNCCGGAATTNGGCANGGNGTGTAAAATTCAAAGGGGAAAAATTNTTCCTANTNTCAACACGGTTCTTTTCAGGTAAGTTTCGTTCTTGGAGATTTNCCAGTAGGGAGCGCCAACTAACAAGAGGAGCGACACGTGGATGCCGCTTGGAAGCTTTCTACGAGATGAGGCCACCAAGGTCTTGGGGAAAATGGTGTAGATAAGTGAATACCGCTCACTGATTCAGCTCATTGTTTGCCCTTCGAGTATTGAAGGTGCCAAAGTTCATACAAAAAGTTTCTGTTAAGGACAATACACGATAGCATAATTTATTCAGTTGTGAAACAGAAATACTGAATACTTTCTATGATTCTTTTAGTGGGTTAGGTCGTTTGATCGACCTGCAATTTTTTTCGA]
[-] EMBL BE229135 [TAAAAATTAANTTCCGTTTAATNTGGGGGNATTGGGGGGAAAAANTTTTCAAACNGGGAANNGGTGGCCCGNGGAAAACCCANGTTGGAAAAAAACCCNTCAAAAANGGGGACAAAAGGGGGGNTTCCCCCCCCCGNGGGGCGCCGTTTTAAGGAATAGNGNAATCCCCCCNGGGCGCCAGGGATTTGGGCANGANTTTGNNCCGGAATTNGGCANGGNGTGTAAAATTCAAAGGGGAAAAATTNTTCCTANTNTCAACACGGTTCTTTTCAGGTAAGTTTCGTTCTTGGAGATTTNCCAGTAGGGAGCGCCAACTAACAAGAGGAGCGACACGTGGATGCCGCTTGGAAGCTTTCTACGAGATGAGGCCACCAAGGTCTTGGGGAAAATGGTGTAGATAAGTGAATACCGCTCACTGATTCAGCTCATTGTTTGCCCTTCGAGTATTGAAGGTGCCAAAGTTCATACAAAAAGTTTCTGTTAAGGACAATACACGATAGCATAATTTATTCAGTTGTGAAACAGAAATACTGAATACTTTCTATGATTCTTTTAGTGGGTTAGGTCGTTTGATCGACCTGCAATTTTTTTCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4724#0 CGCCCGCCTTCTCCCCTATCTATCATTCTATCCCGCCCGCTTCCTTCTCCCCCGCGGCCG 60
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 GACTGCAACTGTAACCCAATTCCTCCTCCCTCCTCGATCACCATGGAGGGAGTTGGCGGC 120
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 GGCGGCGGCGGTGAGGAGTGGCTGCGGCCGATGGACGCGGAGCAGCTGCGGGAGTGCGGG 180
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 CACCGGATGGTGGATTTCGTCGCCGACTACTACAAATCCATCGAGGCCTTCCCCGTCCTC 240
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 AGCCAAGTCCAGCCAGGATATCTGAAGGAAGTTCTTCCAGATTCAGCCCCAAGACAACCT 300
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 GATACTTTGGATTCCCTTTTTGATGATATTCAACAAAAAATAATACCAGGAGTAACGCAC 360
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 TGGCAAAGTCCAAATTATTTTGCTTACTATCCTTCAAATAGCAGCACTGCTGGATTCCTG 420
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 GGGGAGATGCTTAGTGCTGCCTTTAACATTGTTGGCTTCAGTTGGATAACCTCTCCTGCT 480
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 GCTACTGAGCTAGAGGTTATAGTCTTAGACTGGTTTGCAAAAATGCTCCAGCTTCCAAGC 540
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 CAGTTTCTGTCAACTGCTCTTGGTGGAGGAGTAATACAAGGTACTGCCAGTGAAGCTGTT 600
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 CTTGTTGCACTATTGGCTGCACGAGATAGAGCTTTAAAGAAGCATGGGAAGCATTCCCTT 660
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 GAAAAGTTAGTAGTTTATGCATCTGACCAGACACATTCTGCTCTACAAAAGGCATGCCAG 720
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 ATTGCAGGAATTTTCTCAGAGAATGTTAGGGTTGTAATTGCTGATTGTAATAAGAACTAC 780
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 GCCGTTGCCCCTGAGGCAGTTAGTGAGGCGCTTTCCATAGACCTGTCATCTGGTTTGATA 840
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 CCATTTTTCATCTGTGCAACAGTAGGTACAACATCATCGTCAGCTGTGGACCCCCTGCCT 900
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 GAACTAGGACAGATAGCAAAGTCCAATGACATGTGGTTCCATATTGATGCCGCATATGCT 960
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 GGAAGTGCTTGTATATGCCCAGAGTACCGACACCACCTCAATGGAGTGGAAGAAGCTGAT 1020
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 TCGTTTAATATGAATGCCCACAAATGGTTCCTCACTAACTTCGATTGTTCCTTGCTATGG 1080
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 GTTAAGGACAGGAGTTTTCTCATACAATCATTGTCTACGAATCCAGAGTTTCTCAAAAAC 1140
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 AAGGCTTCCCAAGCTAATTCAGTTGTTGATTTCAAAGATTGGCAAATTCCACTTGGACGA 1200
consensus_4724#1 ------------------------------------------------------------
consensus_4724#0 CGCTTTAGATCACTTAAGCTATGGATGGTCTTGAGACTTTATGGTGTGGACAACCTACAA 1260
consensus_4724#1 -----TAAA--AATTAANTTCCGTTTAATNTGGGGGNATTGGGGGGAAAA-ANTTTTCAA 52
** * * **** * * * * * * * ** ** * * * * ***
consensus_4724#0 AGCTATATCCGGAAACACATACATTTGGCTGAACATTTTGAGCAACTTTTATTATCTGAT 1320
consensus_4724#1 ACNGGGAANNGGTGGCCCGNGGAAA-ACCCANGTTGGAAAAAAACCCNTCAAAAANGGGG 111
* * ** * * * * * * * * * * *
consensus_4724#0 TCAAGATTTGAGGTAGTGACTCCAAGGACTTTTTCACTTGTTTGTTTCCGACTTGTGCCT 1380
consensus_4724#1 ACAAAAGGGGGGNTTCCCCCCCCCGNGGGGCGCCGTTTTAAGGAATAGNGNAAT---CCC 168
*** * * * * * ** * ** * * * **
consensus_4724#0 CCCACTTCTGACCATGAAAATGGACGTAAATT-GAATTACGATATGATGGATGGTGTAAA 1439
consensus_4724#1 CCCNGGGC--GCCAGGGATTTGGGCANGANTTTGNNCCGGAATTNGGCANGGNGTGTAAA 226
*** * *** * * *** * * ** * ** * *******
consensus_4724#0 -TTCAAGTGGAAAGA--TCTTCCTATCTC--ACACGGTTCTTT-CAGGTAAGTT-CGTCT 1492
consensus_4724#1 ATTCAAAGGGGAAAAATTNTTCCTANTNTCAACACGGTTCTTTTCAGGTAAGTTTCGTTC 286
***** ** ** * * ****** ************ ********** ***
consensus_4724#0 T--GAGATTTGC-AGTAGG-AGCGCCACTTAC--AGAGGAGCGACACGTGGATGCCGCTT 1546
consensus_4724#1 TTGGAGATTTNCCAGTAGGGAGCGCCAACTAACAAGAGGAGCGACACGTGGATGCCGCTT 346
* ******* * ****** ******* ** **************************
consensus_4724#0 GGAAGCTT-CTACGAGATGAGGCCACCAAGGTCTTGGGGAAAATGGTGTAGATAAGTGAA 1605
consensus_4724#1 GGAAGCTTTCTACGAGATGAGGCCACCAAGGTCTTGGGGAAAATGGTGTAGATAAGTGAA 406
******** ***************************************************
consensus_4724#0 TACCGCTCACTGATTCAGCTCATTGTTTGCCCTTCGAGTATTGAAGGTGCCAAAGTTCAT 1665
consensus_4724#1 TACCGCTCACTGATTCAGCTCATTGTTTGCCCTTCGAGTATTGAAGGTGCCAAAGTTCAT 466
************************************************************
consensus_4724#0 ACAAAAAGTTTCTGTTAAGGACAATACACGATAGCATAATTTATTCAGTTGTGAAACAGA 1725
consensus_4724#1 ACAAAAAGTTTCTGTTAAGGACAATACACGATAGCATAATTTATTCAGTTGTGAAACAGA 526
************************************************************
consensus_4724#0 AATACTGAATACTTTCTATGATTCTTTTAGTGGGTTAGGTCGTTTGATCGACCTGCAATT 1785
consensus_4724#1 AATACTGAATACTTTCTATGATTCTTTTAGTGGGTTAGGTCGTTTGATCGACCTGCAATT 586
************************************************************
consensus_4724#0 TTTTTCGAGTTGATATTAAACTCCCTGCATTATGGATGGTAGTGTGAGGTGGCATGCAGT 1845
consensus_4724#1 TTTTTCGA---------------------------------------------------- 594
********
consensus_4724#0 ATAACATTTAACATACAAATTTTACCAAGATTACGCAGC 1884
consensus_4724#1 ---------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||