These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4726#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1256 fasta sequence [TTCGCCGTCAGCTCAGGTCAGATCGTCAGGCCGTTCTGCTGCCTTGTTTGGAATAGATATCGGCATGGCTTACTTGGGCCTCCTTGTTCTTCTTCTCGCCTTCTGCGGTGGAGCAGAGCACCACGGAGCAGAAGCAGCCGGTGATGCGTCAGCCCGTGGCGCGAGCGCGCGCAGGGGCCTGGCCACCGTCTCCGTGGCGAA-GCCGTCGTACCCCACGGTGACCACGCCCATGTCCGCCTCCACCTCCCCGAGCACGATGCCGATGAGCAGCTCGCCCTCCGCGTTCCCATCCCTGGCGACCGCAGGCGGCGGCGGCGGTGGCGGCGGTGGAGGATCGTGGTGCGTGGCGAGCCAGAGCGCGAGCCCGACGGCGCTGCAGGTCGCGCTGGACTACGCCTGCGGCTACGGCGCGGACTGCTCGGCGATCCAGCCCGGCGGGAGCTGCTTCAACCCGGACACCGTCCACGACCACGCCTCCTACGCCTTCAACAGCTACTACCAGAAGAACCCCGTCGCCACCAGCTGCGACTTCGGCGGCACGGCCACCATCACCAACACCGATCCGAGTTCAGGGTCGTGCCAGTATTCAGCCTCGAGCGGTGGTGGTCAGAACATGCTGCCCCCGCCGTCCCCGACCACCCTGCCGCCGCCAACCCCGATGACGCCGACCACCCCGATGACACCAACACCGACCACGCCGGACACCGGGACGCCGATCTACGGTGGATCCACGACCCCTCCTGACTACGGCTCAATGTCCCCTCCCGGCGGCTTCGGGTCAAACTCCCCTCCTGATTACGGCGACGTCGGCGCCGCACCGGCGACGATGGCCAGCGGCAGGGCGGCGGTGGCGCTCGCCGGCGTCCTGATCGCGACGGTGTCTCTGATGAGCATGTCAACATGATCGCCTACACTTCAGGGTGGCGAAAATTTCTCTACAGCCGTTGCAGTTCAAGAATTAGTTGAGAGAGGGGTGCGCCGCGGTGCGTTGGGTGCTGAGACATGCACGCAAAGATTTAAATTCGCGACGAACACCTCGATCGATGGATCCCCTGCCGCGCTATGCAACACGCTAGCTAGCTATAGCTCGGCAAAAGGCTGAGGTGCCCCATCTGTTTTTAGTGTTCGTCAGAAAACTCAGAAGCACGGTGATGCAGCTTCGTACGTCCCAGTTCTAGCGGCAGGCAGGATATGTTTATATTACAGTTACAGATTCCACTGTTGTACTTAGAAAACCTATTAAAAGAATTTATTTC] [+] EMBL AK063308 [TTCGCCGTCAGCTCAGGTCAGATCGTCAGGCCGTTCTGCTGCCTTGTTTGGAATAGATATCGGCATGGCTTACTTGGGCCTCCTTGTTCTTCTTCTCGCCTTCTGCGGTGGAGCAGAGCACCACGGAGCAGAAGCAGCCGGTGATGCGTCAGCCCGTGGCGCGAGCGCGCGCAGGGGCCTGGCCACCGTCTCCGTGGCGAA GCCGTCGTACCCCACGGTGACCACGCCCATGTCCGCCTCCACCTCCCCGAGCACGATGCCGATGAGCAGCTCGCCCTCCGCGTTCCCATCCCTGGCGACCGCAGGCGGCGGCGGCGGTGGCGGCGGTGGAGGATCGTGGTGCGTGGCGAGCCAGAGCGCGAGCCCGACGGCGCTGCAGGTCGCGCTGGACTACGCCTGCGGCTACGGCGCGGACTGCTCGGCGATCCAGCCCGGCGGGAGCTGCTTCAACCCGGACACCGTCCACGACCACGCCTCCTACGCCTTCAACAGCTACTACCAGAAGAACCCCGTCGCCACCAGCTGCGACTTCGGCGGCACGGCCACCATCACCAACACCGATCCGAGTTCAGGGTCGTGCCAGTATTCAGCCTCGAGCGGTGGTGGTCAGAACATGCTGCCCCCGCCGTCCCCGACCACCCTGCCGCCGCCAACCCCGATGACGCCGACCACCCCGATGACACCAACACCGACCACGCCGGACACCGGGACGCCGATCTACGGTGGATCCACGACCCCTCCTGACTACGGCTCAATGTCCCCTCCCGGCGGCTTCGGGTCAAACTCCCCTCCTGATTACGGCGACGTCGGCGCCGCACCGGCGACGATGGCCAGCGGCAGGGCGGCGGTGGCGCTCGCCGGCGTCCTGATCGCGACGGTGTCTCTGATGAGCATGTCAACATGATCGCCTACACTTCAGGGTGGCGAAAATTTCTCTACAGCCGTTGCAGTTCAAGAATTAGTTGAGAGAGGGGTGCGCCGCGGTGCGTTGGGTGCTGAGACATGCACGCAAAGATTTAAATTCGCGACGAACACCTCGATCGATGGATCCCCTGCCGCGCTATGCAACACGCTAGCTAGCTATAGCTCGGCAAAAGGCTGAGGTGCCCCATCTGTTTTTAGTGTTCGTCAGAAAACTCAGAAGCACGGTGATGCAGCTTCGTACGTCCCAGTTCTAGCGGCAGGCAGGATATGTTTATATTACAGTTACAGATTCCACTGTTGTACTTAGAAAACCTATTAAAAGAATTTATTTC] [+] EMBL AU164151 [ GGTCAGATCGTCAGGCCGTTCTGCTGCCTTGTTTGGAATAGATATCGGCATGGCTTACTTGGGCCTCCTTGTTCTTCTTCTCGCCTTCTGCGGTGGAGCAGAGCACCACGGAGCAGAAGCAGCCGGTGATGCGTCA NCCGTGGCGCGAGCGCGCGCAGGGGCCTGGCCACCGTCTCCGTGGCGAANGTC CGTACCCCACGGTGACCACGCCCATGTCCGNCTCCACCTCCCCGAGCACGATGCCGATGAGCAGCTCGCCCTCCGCGTTCCCATCCCTGGCGACCGCA GCGGCGGCGGCGGTGGCGGCGGTGGAGGATCGTGGTGCGTGGCGAGCCANAGCGCGAG CCGACGGCGCT ] consensusID : consensus_4726#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [TCTATGGAATAATTTTAGTATGTCTTGGTATTTGAACAAAATGATAAACAGGAATGTTTTGCGTGGATTTCTTTCACATGAAAATTTGTGGCTTGACATGTAAAAGCATCCCATACATATATGGTTTTTTTTTTCCAACCTTACCAATTTCGCTTGATCGCGACAGGAGCAGAGCACCACGGAGCAGAAGCAGCCGGTGATGCGTCANCCNGTGGCGCGAGCGCGCGCAGGGGCCTGGNCACCGTCTCCGTGGCGAACGGTTCGTACCCCAC] [+] EMBL D43576 [TCTATGGAATAATTTTAGTATGTCTTGGTATTTGAACAAAATGATAAACAGGAATGTTTTGCGTGGATTTCTTTCACATGAAAATTTGTGGCTTGACATGTAAAAGCATCCCATACATATATGGTTTTTTTTTTCCAACCTTACCAATTTCGCTTGATCGCGACAGGAGCAGAGCACCACGGAGCAGAAGCAGCCGGTGATGCGTCANCCNGTGGCGCGAGCGCGCGCAGGGGCCTGGNCACCGTCTCCGTGGCGAACGGTTCGTACCCCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4726#0 --------------------------------------------------TTCGCCGTCA 10 consensus_4726#1 TCTATGGAATAATTTTAGTATGTCTTGGTATTTGAACAAAATGATAAACAGGAATGTTTT 60 * consensus_4726#0 GCTCAGGTCAGATCGTCAGGCCGTTCTGCTGCCTTGTTTGGAATAG------ATATCGGC 64 consensus_4726#1 GCGTGGATTTCTTTCACATGAAAATTTGTGGCTTGACATGTAAAAGCATCCCATACATAT 120 ** * * * ** * * ** ** * ** ** ** *** consensus_4726#0 ATGGCTTACTTGGGCCTCCTTGTTCTTCTTCTCGCCTTCTGCGGTGGAGCAGAGCACCAC 124 consensus_4726#1 ATGGTTTTTTTTTTCCAACCTTACCAATTTCGCTTGATCGCGACAGGAGCAGAGCACCAC 180 **** ** ** ** * * * *** * ** *************** consensus_4726#0 GGAGCAGAAGCAGCCGGTGATGCGTCAGCCCGTGGCGCGAGCGCGCGCAGGGGCCTGGCC 184 consensus_4726#1 GGAGCAGAAGCAGCCGGTGATGCGTCANCCNGTGGCGCGAGCGCGCGCAGGGGCCTGGNC 240 *************************** ** *************************** * consensus_4726#0 ACCGTCTCCGTGGCGAAGCCGTCGTACCCCACGGTGACCACGCCCATGTCCGCCTCCACC 244 consensus_4726#1 ACCGTCTCCGTGGCGAACGGTTCGTACCCCAC---------------------------- 272 ***************** *********** consensus_4726#0 TCCCCGAGCACGATGCCGATGAGCAGCTCGCCCTCCGCGTTCCCATCCCTGGCGACCGCA 304 consensus_4726#1 ------------------------------------------------------------ consensus_4726#0 GGCGGCGGCGGCGGTGGCGGCGGTGGAGGATCGTGGTGCGTGGCGAGCCAGAGCGCGAGC 364 consensus_4726#1 ------------------------------------------------------------ consensus_4726#0 CCGACGGCGCTGCAGGTCGCGCTGGACTACGCCTGCGGCTACGGCGCGGACTGCTCGGCG 424 consensus_4726#1 ------------------------------------------------------------ consensus_4726#0 ATCCAGCCCGGCGGGAGCTGCTTCAACCCGGACACCGTCCACGACCACGCCTCCTACGCC 484 consensus_4726#1 ------------------------------------------------------------ consensus_4726#0 TTCAACAGCTACTACCAGAAGAACCCCGTCGCCACCAGCTGCGACTTCGGCGGCACGGCC 544 consensus_4726#1 ------------------------------------------------------------ consensus_4726#0 ACCATCACCAACACCGATCCGAGTTCAGGGTCGTGCCAGTATTCAGCCTCGAGCGGTGGT 604 consensus_4726#1 ------------------------------------------------------------ consensus_4726#0 GGTCAGAACATGCTGCCCCCGCCGTCCCCGACCACCCTGCCGCCGCCAACCCCGATGACG 664 consensus_4726#1 ------------------------------------------------------------ consensus_4726#0 CCGACCACCCCGATGACACCAACACCGACCACGCCGGACACCGGGACGCCGATCTACGGT 724 consensus_4726#1 ------------------------------------------------------------ consensus_4726#0 GGATCCACGACCCCTCCTGACTACGGCTCAATGTCCCCTCCCGGCGGCTTCGGGTCAAAC 784 consensus_4726#1 ------------------------------------------------------------ consensus_4726#0 TCCCCTCCTGATTACGGCGACGTCGGCGCCGCACCGGCGACGATGGCCAGCGGCAGGGCG 844 consensus_4726#1 ------------------------------------------------------------ consensus_4726#0 GCGGTGGCGCTCGCCGGCGTCCTGATCGCGACGGTGTCTCTGATGAGCATGTCAACATGA 904 consensus_4726#1 ------------------------------------------------------------ consensus_4726#0 TCGCCTACACTTCAGGGTGGCGAAAATTTCTCTACAGCCGTTGCAGTTCAAGAATTAGTT 964 consensus_4726#1 ------------------------------------------------------------ consensus_4726#0 GAGAGAGGGGTGCGCCGCGGTGCGTTGGGTGCTGAGACATGCACGCAAAGATTTAAATTC 1024 consensus_4726#1 ------------------------------------------------------------ consensus_4726#0 GCGACGAACACCTCGATCGATGGATCCCCTGCCGCGCTATGCAACACGCTAGCTAGCTAT 1084 consensus_4726#1 ------------------------------------------------------------ consensus_4726#0 AGCTCGGCAAAAGGCTGAGGTGCCCCATCTGTTTTTAGTGTTCGTCAGAAAACTCAGAAG 1144 consensus_4726#1 ------------------------------------------------------------ consensus_4726#0 CACGGTGATGCAGCTTCGTACGTCCCAGTTCTAGCGGCAGGCAGGATATGTTTATATTAC 1204 consensus_4726#1 ------------------------------------------------------------ consensus_4726#0 AGTTACAGATTCCACTGTTGTACTTAGAAAACCTATTAAAAGAATTTATTTC 1256 consensus_4726#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||