These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4727#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [GTTCGTCCTGCGCCCACCGGGTGGAGCCCCTCCCGTTGGGGTTCGCGCGCGCGGTCCACCGTTCCAGTCCATGTTGGCGTCCGCCGGGGTTTCGCGGCGCTGCCAGGTGACCAATGCGGCCGGAGGCGCCAGCCGGAATGCCTACTGAGGCGCCACCGGCCAGCCCATGGGTTCCATGTGGAGAACCGGCCCGGCCGGCCGCCTGGCGCCTGTGGTGGCCAGCCGGTCGGAGCTCGTCTCGGTGTCAGCGTGGCGATGCTAGCTGCCTCTGCCTGGTACACCTTGTACCTACCAAATGTTTGGTGTTCCACTTGATCTTGAATATTTTCCAGCTTTCGGGTAAATTGATCCACAACCCCAAGCTGCTTGTGATATGTTAGCACTAGTAGTAGTAATTGGGTAATTATTTCTTGCCTGGGAGAATTCATGCTCCATGGCATGCTTGTACATTTGTATGCATGACAAATTGGGAGTGCTCACAGAGTGCAAGCCCCCAACCTTGTGATTCAAAA] [+] EMBL BI799291 [GTTCGTCCTGCGCCCACCGGGTGGAGCCCCTCCCGTTGGGGTTCGCGCGCGCGGTCCACCGTTCCAGTCCATGTTGGCGTCCGCCGGGGTTTCGCGGCGCTGCCAGGTGACCAATGCGGCCGGAGGCGCCAGCCGGAATGCCTACTGAGGCGCCACCGGCCAGCCCATGGGTTCCATGTGGAGAACCGGCCCGGCCGGCCGCCTGGCGCCTGTGGTGGCCAGCCGGTCGGAGCTCGTCTCGGTGTCAGCGTGGCGATGCTAGCTGCCTCTGCCTGGTACACCTTGTACCTACCAAATGTTTGGTGTTCCACTTGATCTTGAATATTTTCCAGCTTTCGGGTAAATTGATCCACAACCCCAAGCTGCTTGTGATATGTTAGCACTAGTAGTAGTAATTGGGTAATTATTTCTTGCCTGGGAGAATTCATGCTCCATGGCATGCTTGTACATTTGTATGCATGACAAATTGGGAGTGCTCACAGAGTGCAAGCCCCCAACCTTGTGATTCAAAA] consensusID : consensus_4727#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [GAGGCGCACGGCCAGCCATGGGTTCCATGTGGAGAAGCGGCAGGCGGCGCTGGCGCTGTGGTGGCAGCGGTCGGAGCTCGTCTCGGTGTCAGCGTGGCGATGCTAGCTGCCTCTGCCTGGTACACTTGTACTACAAATGTTTGCTGTTCATTGATCTTGAATATTTTCAGCTTTGGGTAAATTGATCAAACCAAAGCTGCTTGTGATATGTTAGCACTAGTAGTAGTAATTGGGTAATTATTTCTTGCCTGGGAGAATTCATGCTCCATGGCATGCTTGTACAATTTGTATGGCAATGACAAAATTGGGAGTGCTCAAGAGTGCAAGCCCCCAACCTTGTGATTCAACTGTTCATAACCGCACGTCTTTCTTTTGTGCACATCTCTGATCTAATATACAGAGTAG] [-] EMBL BI305433 [GAGGCGCACGGCCAGCCATGGGTTCCATGTGGAGAAGCGGCAGGCGGCGCTGGCGCTGTGGTGGCAGCGGTCGGAGCTCGTCTCGGTGTCAGCGTGGCGATGCTAGCTGCCTCTGCCTGGTACACTTGTACTACAAATGTTTGCTGTTCATTGATCTTGAATATTTTCAGCTTTGGGTAAATTGATCAAACCAAAGCTGCTTGTGATATGTTAGCACTAGTAGTAGTAATTGGGTAATTATTTCTTGCCTGGGAGAATTCATGCTCCATGGCATGCTTGTACAATTTGTATGGCAATGACAAAATTGGGAGTGCTCAAGAGTGCAAGCCCCCAACCTTGTGATTCAACTGTTCATAACCGCACGTCTTTCTTTTGTGCACATCTCTGATCTAATATACAGAGTAG] consensusID : consensus_4727#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 88 fasta sequence [TGAATCATGCTCCATGGCATGGCCGTTGTACAATTGTATGGCAATGACAAATGGGAGTGCTCAAGAGTGCAAGCCCCCAACCTTGTGA] [+] EMBL BU673875 [TGAATCATGCTCCATGGCATGGCCGTTGTACAATTGTATGGCAATGACAAATGGGAGTGCTCAAGAGTGCAAGCCCCCAACCTTGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4727#1 ------------------------------------------------------------ consensus_4727#2 ------------------------------------------------------------ consensus_4727#0 GTTCGTCCTGCGCCCACCGGGTGGAGCCCCTCCCGTTGGGGTTCGCGCGCGCGGTCCACC 60 consensus_4727#1 ------------------------------------------------------------ consensus_4727#2 ------------------------------------------------------------ consensus_4727#0 GTTCCAGTCCATGTTGGCGTCCGCCGGGGTTTCGCGGCGCTGCCAGGTGACCAATGCGGC 120 consensus_4727#1 --------------------------GAGGCGCA--CGGCCAGCC-ATGGGTTCCATGTG 31 consensus_4727#2 ------------------------------------------------------------ consensus_4727#0 CGGAGGCGCCAGCCGGAATGCCTACTGAGGCGCCACCGGCCAGCCCATGGGTTCCATGTG 180 consensus_4727#1 GAGAAGCGGC--AGGCGGCG--CTGGCGC-TGTGGTGGCAG--CGGTCGGAGCTCGTCTC 84 consensus_4727#2 ------------------------------------------------------------ consensus_4727#0 GAGAACCGGCCCGGCCGGCCGCCTGGCGCCTGTGGTGGCCAGCCGGTCGGAGCTCGTCTC 240 consensus_4727#1 GGTGTCAGCGTGGCGATGCTAGCTGCCTCTGCCTGGTACAC-TTGTACTA--CAAATGTT 141 consensus_4727#2 ------------------------------------------------------------ consensus_4727#0 GGTGTCAGCGTGGCGATGCTAGCTGCCTCTGCCTGGTACACCTTGTACCTACCAAATGTT 300 consensus_4727#1 TGCTGTTCA--TTGATCTTGAATATTTTC-AGCTTT-GGGTAAATTGATC---AAACCAA 194 consensus_4727#2 ------------------------------------------------------------ consensus_4727#0 TGGTGTTCCACTTGATCTTGAATATTTTCCAGCTTTCGGGTAAATTGATCCACAACCCCA 360 consensus_4727#1 AGCTGCTTGTGATATGTTAGCACTAGTAGTAGTAATTGGGTAATTATTTCTTGCCTGGGA 254 consensus_4727#2 ------------------------------------------------------------ consensus_4727#0 AGCTGCTTGTGATATGTTAGCACTAGTAGTAGTAATTGGGTAATTATTTCTTGCCTGGGA 420 consensus_4727#1 GAATTCATGCTCCATGGCATGC---TTGTACAATTTGTATGGCAATGACAAAATTGGGAG 311 consensus_4727#2 TGAATCATGCTCCATGGCATGGCCGTTGTACAATT-GTATGGCAATGACAAA--TGGGAG 57 consensus_4727#0 GAATTCATGCTCCATGGCATGC---TTGTACATTT-GTATGC--ATGACAAA-TTGGGAG 473 * ***************** ******* ** ***** ******** ****** consensus_4727#1 TGCTCA-AGAGTGCAAGCCCCCAACCTTGTGATTCAACTGTTCATAACCGCACGTCTTTC 370 consensus_4727#2 TGCTCA-AGAGTGCAAGCCCCCAACCTTGTGA---------------------------- 88 consensus_4727#0 TGCTCACAGAGTGCAAGCCCCCAACCTTGTGATTCAAAA--------------------- 512 ****** ************************* consensus_4727#1 TTTTGTGCACATCTCTGATCTAATATACAGAGTAG 405 consensus_4727#2 ----------------------------------- consensus_4727#0 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||