cluster # 4727

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4727 cluster # 4727 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4727#0 length = 512 sequences # 1

consensus_4727#1 length = 405 sequences # 1
consensus_4727#2 length = 88 sequences # 1

consensusID : consensus_4727#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence

                              [GTTCGTCCTGCGCCCACCGGGTGGAGCCCCTCCCGTTGGGGTTCGCGCGCGCGGTCCACCGTTCCAGTCCATGTTGGCGTCCGCCGGGGTTTCGCGGCGCTGCCAGGTGACCAATGCGGCCGGAGGCGCCAGCCGGAATGCCTACTGAGGCGCCACCGGCCAGCCCATGGGTTCCATGTGGAGAACCGGCCCGGCCGGCCGCCTGGCGCCTGTGGTGGCCAGCCGGTCGGAGCTCGTCTCGGTGTCAGCGTGGCGATGCTAGCTGCCTCTGCCTGGTACACCTTGTACCTACCAAATGTTTGGTGTTCCACTTGATCTTGAATATTTTCCAGCTTTCGGGTAAATTGATCCACAACCCCAAGCTGCTTGTGATATGTTAGCACTAGTAGTAGTAATTGGGTAATTATTTCTTGCCTGGGAGAATTCATGCTCCATGGCATGCTTGTACATTTGTATGCATGACAAATTGGGAGTGCTCACAGAGTGCAAGCCCCCAACCTTGTGATTCAAAA]

[+] EMBL BI799291             [GTTCGTCCTGCGCCCACCGGGTGGAGCCCCTCCCGTTGGGGTTCGCGCGCGCGGTCCACCGTTCCAGTCCATGTTGGCGTCCGCCGGGGTTTCGCGGCGCTGCCAGGTGACCAATGCGGCCGGAGGCGCCAGCCGGAATGCCTACTGAGGCGCCACCGGCCAGCCCATGGGTTCCATGTGGAGAACCGGCCCGGCCGGCCGCCTGGCGCCTGTGGTGGCCAGCCGGTCGGAGCTCGTCTCGGTGTCAGCGTGGCGATGCTAGCTGCCTCTGCCTGGTACACCTTGTACCTACCAAATGTTTGGTGTTCCACTTGATCTTGAATATTTTCCAGCTTTCGGGTAAATTGATCCACAACCCCAAGCTGCTTGTGATATGTTAGCACTAGTAGTAGTAATTGGGTAATTATTTCTTGCCTGGGAGAATTCATGCTCCATGGCATGCTTGTACATTTGTATGCATGACAAATTGGGAGTGCTCACAGAGTGCAAGCCCCCAACCTTGTGATTCAAAA]




>consensus_4727#0
GTTCGTCCTGCGCCCACCGGGTGGAGCCCCTCCCGTTGGGGTTCGCGCGCGCGGTCCACC
GTTCCAGTCCATGTTGGCGTCCGCCGGGGTTTCGCGGCGCTGCCAGGTGACCAATGCGGC
CGGAGGCGCCAGCCGGAATGCCTACTGAGGCGCCACCGGCCAGCCCATGGGTTCCATGTG
GAGAACCGGCCCGGCCGGCCGCCTGGCGCCTGTGGTGGCCAGCCGGTCGGAGCTCGTCTC
GGTGTCAGCGTGGCGATGCTAGCTGCCTCTGCCTGGTACACCTTGTACCTACCAAATGTT
TGGTGTTCCACTTGATCTTGAATATTTTCCAGCTTTCGGGTAAATTGATCCACAACCCCA
AGCTGCTTGTGATATGTTAGCACTAGTAGTAGTAATTGGGTAATTATTTCTTGCCTGGGA
GAATTCATGCTCCATGGCATGCTTGTACATTTGTATGCATGACAAATTGGGAGTGCTCAC
AGAGTGCAAGCCCCCAACCTTGTGATTCAAAA

consensusID : consensus_4727#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [GAGGCGCACGGCCAGCCATGGGTTCCATGTGGAGAAGCGGCAGGCGGCGCTGGCGCTGTGGTGGCAGCGGTCGGAGCTCGTCTCGGTGTCAGCGTGGCGATGCTAGCTGCCTCTGCCTGGTACACTTGTACTACAAATGTTTGCTGTTCATTGATCTTGAATATTTTCAGCTTTGGGTAAATTGATCAAACCAAAGCTGCTTGTGATATGTTAGCACTAGTAGTAGTAATTGGGTAATTATTTCTTGCCTGGGAGAATTCATGCTCCATGGCATGCTTGTACAATTTGTATGGCAATGACAAAATTGGGAGTGCTCAAGAGTGCAAGCCCCCAACCTTGTGATTCAACTGTTCATAACCGCACGTCTTTCTTTTGTGCACATCTCTGATCTAATATACAGAGTAG]

[-] EMBL BI305433             [GAGGCGCACGGCCAGCCATGGGTTCCATGTGGAGAAGCGGCAGGCGGCGCTGGCGCTGTGGTGGCAGCGGTCGGAGCTCGTCTCGGTGTCAGCGTGGCGATGCTAGCTGCCTCTGCCTGGTACACTTGTACTACAAATGTTTGCTGTTCATTGATCTTGAATATTTTCAGCTTTGGGTAAATTGATCAAACCAAAGCTGCTTGTGATATGTTAGCACTAGTAGTAGTAATTGGGTAATTATTTCTTGCCTGGGAGAATTCATGCTCCATGGCATGCTTGTACAATTTGTATGGCAATGACAAAATTGGGAGTGCTCAAGAGTGCAAGCCCCCAACCTTGTGATTCAACTGTTCATAACCGCACGTCTTTCTTTTGTGCACATCTCTGATCTAATATACAGAGTAG]




>consensus_4727#1
GAGGCGCACGGCCAGCCATGGGTTCCATGTGGAGAAGCGGCAGGCGGCGCTGGCGCTGTG
GTGGCAGCGGTCGGAGCTCGTCTCGGTGTCAGCGTGGCGATGCTAGCTGCCTCTGCCTGG
TACACTTGTACTACAAATGTTTGCTGTTCATTGATCTTGAATATTTTCAGCTTTGGGTAA
ATTGATCAAACCAAAGCTGCTTGTGATATGTTAGCACTAGTAGTAGTAATTGGGTAATTA
TTTCTTGCCTGGGAGAATTCATGCTCCATGGCATGCTTGTACAATTTGTATGGCAATGAC
AAAATTGGGAGTGCTCAAGAGTGCAAGCCCCCAACCTTGTGATTCAACTGTTCATAACCG
CACGTCTTTCTTTTGTGCACATCTCTGATCTAATATACAGAGTAG

consensusID : consensus_4727#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 88
fasta sequence

                              [TGAATCATGCTCCATGGCATGGCCGTTGTACAATTGTATGGCAATGACAAATGGGAGTGCTCAAGAGTGCAAGCCCCCAACCTTGTGA]

[+] EMBL BU673875             [TGAATCATGCTCCATGGCATGGCCGTTGTACAATTGTATGGCAATGACAAATGGGAGTGCTCAAGAGTGCAAGCCCCCAACCTTGTGA]




>consensus_4727#2
TGAATCATGCTCCATGGCATGGCCGTTGTACAATTGTATGGCAATGACAAATGGGAGTGC
TCAAGAGTGCAAGCCCCCAACCTTGTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4727#1      ------------------------------------------------------------
consensus_4727#2      ------------------------------------------------------------
consensus_4727#0      GTTCGTCCTGCGCCCACCGGGTGGAGCCCCTCCCGTTGGGGTTCGCGCGCGCGGTCCACC 60
                                                                                  

consensus_4727#1      ------------------------------------------------------------
consensus_4727#2      ------------------------------------------------------------
consensus_4727#0      GTTCCAGTCCATGTTGGCGTCCGCCGGGGTTTCGCGGCGCTGCCAGGTGACCAATGCGGC 120
                                                                                  

consensus_4727#1      --------------------------GAGGCGCA--CGGCCAGCC-ATGGGTTCCATGTG 31
consensus_4727#2      ------------------------------------------------------------
consensus_4727#0      CGGAGGCGCCAGCCGGAATGCCTACTGAGGCGCCACCGGCCAGCCCATGGGTTCCATGTG 180
                                                                                  

consensus_4727#1      GAGAAGCGGC--AGGCGGCG--CTGGCGC-TGTGGTGGCAG--CGGTCGGAGCTCGTCTC 84
consensus_4727#2      ------------------------------------------------------------
consensus_4727#0      GAGAACCGGCCCGGCCGGCCGCCTGGCGCCTGTGGTGGCCAGCCGGTCGGAGCTCGTCTC 240
                                                                                  

consensus_4727#1      GGTGTCAGCGTGGCGATGCTAGCTGCCTCTGCCTGGTACAC-TTGTACTA--CAAATGTT 141
consensus_4727#2      ------------------------------------------------------------
consensus_4727#0      GGTGTCAGCGTGGCGATGCTAGCTGCCTCTGCCTGGTACACCTTGTACCTACCAAATGTT 300
                                                                                  

consensus_4727#1      TGCTGTTCA--TTGATCTTGAATATTTTC-AGCTTT-GGGTAAATTGATC---AAACCAA 194
consensus_4727#2      ------------------------------------------------------------
consensus_4727#0      TGGTGTTCCACTTGATCTTGAATATTTTCCAGCTTTCGGGTAAATTGATCCACAACCCCA 360
                                                                                  

consensus_4727#1      AGCTGCTTGTGATATGTTAGCACTAGTAGTAGTAATTGGGTAATTATTTCTTGCCTGGGA 254
consensus_4727#2      ------------------------------------------------------------
consensus_4727#0      AGCTGCTTGTGATATGTTAGCACTAGTAGTAGTAATTGGGTAATTATTTCTTGCCTGGGA 420
                                                                                  

consensus_4727#1      GAATTCATGCTCCATGGCATGC---TTGTACAATTTGTATGGCAATGACAAAATTGGGAG 311
consensus_4727#2      TGAATCATGCTCCATGGCATGGCCGTTGTACAATT-GTATGGCAATGACAAA--TGGGAG 57
consensus_4727#0      GAATTCATGCTCCATGGCATGC---TTGTACATTT-GTATGC--ATGACAAA-TTGGGAG 473
                        * *****************    ******* ** *****   ********  ******

consensus_4727#1      TGCTCA-AGAGTGCAAGCCCCCAACCTTGTGATTCAACTGTTCATAACCGCACGTCTTTC 370
consensus_4727#2      TGCTCA-AGAGTGCAAGCCCCCAACCTTGTGA---------------------------- 88
consensus_4727#0      TGCTCACAGAGTGCAAGCCCCCAACCTTGTGATTCAAAA--------------------- 512
                      ****** *************************                            

consensus_4727#1      TTTTGTGCACATCTCTGATCTAATATACAGAGTAG 405
consensus_4727#2      -----------------------------------
consensus_4727#0      -----------------------------------