These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4733#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1848 fasta sequence [ACACCAACCTAGCTAACTCACTCACTCACTCCTTCTTCTTGCGACCTAGCTATCGAGCTAGAGCTTCCAAAACCCTAGCTAGCTAGCTGAGACAGTTAGTTTCATCTCGAACTAGTTGTTGATATGGGCAGCTTGGACACCAACCCCACGGCCTTCTCCGCCTTCCCCGCCGGCGAGGGTGAAACCTTCCAGCCGCTCAACGCCGATGATGTCCGGTCCTACCTCCACAAGGCGGTGGACTTCATCTCGGACTACTACAAGTCCGTGGAGTCCATGCCGGTGCTGCCCAATGTCAAGCCGGGGTACCTGCAGGACGAGCTCAGGGCCTCGCCGCCGACGTACTCGGCGCCGTTCGACGTCACCATGAAGGAGCTCCGGAGCTCCGTCGTCCCCGGGATGACGCACTGGGCGAGCCCCAACTTCTTCGCGTTTTTCCCCTCCACGAATAGTGCGGCCGCCATTGCCGGCGACCTCATCGCGTCGGCGATGAACACGGTCGGGTTCACGTGGCAGGCGTCGCCGGCGGCCACCGAGATGGAGGTGCTCGCGCTGGACTGGCTCGCGCAGATGCTCAACCTGCCGACGAGCTTCATGAACCGCACCGGCGAGGGGCGTGGCACCGGCGGTGGGGTTATTCTGGGGACGACCAGCGAGGCGATGCTCGTCACGCTCGTTGCCGCGCGCGACGCCGCGCTGCGGCGGAGCGGCAGCGACGGCGTGGCGGGACTCCACCGGCTCGCCGTGTACGCCGCCGACCAGACGCACTCCACGTTCTTCAAGGCGTGCCGCCTCGCCGGGTTTGATCCGGCGAACATCCGGTCGATCCCCACCGGGGCCGAGACCGACTACGGCCTCGACCCGGCGAGGCTGCTGGAGGCGATGCAGGCCGACGCCGACGCCGGGCTGGTGCCCACCTACGTGTGCGCCACGGTGGGCACCACGTCGTCCAACGCCGTCGACCCGGTGGGCGCCGTGGCCGACGTCGCGGCGAGGTTCGCCGCGTGGGTGCACGTCGACGCGGCGTACGCCGGCAGCGCGTGCATCTGCCCGGAGTTCAGGCACCACCTCGACGGCGTGGAGCGCGTGGACTCCATCAGCATGAGCCCCCACAAATGGCTGATGACCTGCCTCGACTGCACCTGCCTCTACGTGCGCGACACCCACCGCCTCACCGGCTCCCTCGAGACCAACCCGGAGTACCTCAAGAACCACGCCAGCGACTCCGGCGAGGTCACCGACCTCAAGGACATGCAGGTCGGCGTCGGCCGCCGCTTCCGGGGGCTCAAGCTCTGGATGGTCATGCGCACCTACGGCGTCGCCAAGCTGCAGGAGCACATCCGGAGCGACGTCGCCATGGCCAAGGTGTTCGAGGACCTCGTCCGCGGCGACGACAGGTTCGAGGTCGTCGTGCCGAGGAACTTCGCTCTCGTCTGCTTCAGGATCAGGGCCGGCGCCGGCGCCGCCGCCGCGACGGAGGAGGACGCCGACGAGGCGAACCGCGAGCTGATGGAGCGGCTGAACAAGACCGGCAAGGCGTACGTGGCGCACACGGTGGTCGGCGGCAGGTTCGTGCTGCGCTTCGCGGTGGGCTCGTCGCTGCAGGAAGAGCATCACGTGCGGAGCGCGTGGGAGCTCATCAAGAAGACGACCACCGAGATGATGAACTAAGTAAAGAGAAGATTACAAATAAATACACATATTTAGAACACATATACGTTTTTGATTTTTTTTTTTGGGGTTTTAGATGCGAATCTGTTGATTCATTTTGTGAGCTATTTATACCTATGGATATATGGATCAAAATAAATTATTATTTGGTTGTAATTTTTTTAAAAGATGAACTGATAC] [+] EMBL AK069031 [ACACCAACCTAGCTAACTCACTCACTCACTCCTTCTTCTTGCGACCTAGCTATCGAGCTAGAGCTTCCAAAACCCTAGCTAGCTAGCTGAGACAGTTAGTTTCATCTCGAACTAGTTGTTGATATGGGCAGCTTGGACACCAACCCCACGGCCTTCTCCGCCTTCCCCGCCGGCGAGGGTGAAACCTTCCAGCCGCTCAACGCCGATGATGTCCGGTCCTACCTCCACAAGGCGGTGGACTTCATCTCGGACTACTACAAGTCCGTGGAGTCCATGCCGGTGCTGCCCAATGTCAAGCCGGGGTACCTGCAGGACGAGCTCAGGGCCTCGCCGCCGACGTACTCGGCGCCGTTCGACGTCACCATGAAGGAGCTCCGGAGCTCCGTCGTCCCCGGGATGACGCACTGGGCGAGCCCCAACTTCTTCGCGTTTTTCCCCTCCACGAATAGTGCGGCCGCCATTGCCGGCGACCTCATCGCGTCGGCGATGAACACGGTCGGGTTCACGTGGCAGGCGTCGCCGGCGGCCACCGAGATGGAGGTGCTCGCGCTGGACTGGCTCGCGCAGATGCTCAACCTGCCGACGAGCTTCATGAACCGCACCGGCGAGGGGCGTGGCACCGGCGGTGGGGTTATTCTGGGGACGACCAGCGAGGCGATGCTCGTCACGCTCGTTGCCGCGCGCGACGCCGCGCTGCGGCGGAGCGGCAGCGACGGCGTGGCGGGACTCCACCGGCTCGCCGTGTACGCCGCCGACCAGACGCACTCCACGTTCTTCAAGGCGTGCCGCCTCGCCGGGTTTGATCCGGCGAACATCCGGTCGATCCCCACCGGGGCCGAGACCGACTACGGCCTCGACCCGGCGAGGCTGCTGGAGGCGATGCAGGCCGACGCCGACGCCGGGCTGGTGCCCACCTACGTGTGCGCCACGGTGGGCACCACGTCGTCCAACGCCGTCGACCCGGTGGGCGCCGTGGCCGACGTCGCGGCGAGGTTCGCCGCGTGGGTGCACGTCGACGCGGCGTACGCCGGCAGCGCGTGCATCTGCCCGGAGTTCAGGCACCACCTCGACGGCGTGGAGCGCGTGGACTCCATCAGCATGAGCCCCCACAAATGGCTGATGACCTGCCTCGACTGCACCTGCCTCTACGTGCGCGACACCCACCGCCTCACCGGCTCCCTCGAGACCAACCCGGAGTACCTCAAGAACCACGCCAGCGACTCCGGCGAGGTCACCGACCTCAAGGACATGCAGGTCGGCGTCGGCCGCCGCTTCCGGGGGCTCAAGCTCTGGATGGTCATGCGCACCTACGGCGTCGCCAAGCTGCAGGAGCACATCCGGAGCGACGTCGCCATGGCCAAGGTGTTCGAGGACCTCGTCCGCGGCGACGACAGGTTCGAGGTCGTCGTGCCGAGGAACTTCGCTCTCGTCTGCTTCAGGATCAGGGCCGGCGCCGGCGCCGCCGCCGCGACGGAGGAGGACGCCGACGAGGCGAACCGCGAGCTGATGGAGCGGCTGAACAAGACCGGCAAGGCGTACGTGGCGCACACGGTGGTCGGCGGCAGGTTCGTGCTGCGCTTCGCGGTGGGCTCGTCGCTGCAGGAAGAGCATCACGTGCGGAGCGCGTGGGAGCTCATCAAGAAGACGACCACCGAGATGATGAACTAAGTAAAGAGAAGATTACAAATAAATACACATATTTAGAACACATATACGTTTTTGATTTTTTTTTTTGGGGTTTTAGATGCGAATCTGTTGATTCATTTTGTGAGCTATTTATACCTATGGATATATGGATCAAAATAAATTATTATTTGGTTGTAATTTTTTTAAAAGATGAACTGATAC] consensusID : consensus_4733#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 674 fasta sequence [AGGAATAAGCTTGGGCCGCTCAAGAACCACGCCAGCGACTCCGGCGAGGTCACCGACCTCAAGGACATGCAGGTCGGCGTCGGCCGCCGCTTCCGGGGGCTCAAGCTCTGGATGGTCATGCGCACCTACGGCGTCGCGAAGCTGCAGGAGCACATCCGGAGCGACGTCGCCATGGCCAAGGTGTTCGAGGACCTCGTCCGCGGCGACGACAGGTTCGAGGTCGTCGTGCCGAGGAACTTCGCGCTCGTCTGCTTCAGGATCAGGGCCGGCGCCGGCGCCGCCGCCGCGACGGAGGAGGACGCCGACGAGGCGAACCGCGAGCTGATGGAGCGGCTGAACAAGACCGGCAAGGCGTACGTGGCGCACACGGTGGTCGGCGGCAGGTTCGTGCTGCGCTTCGCGGTGGGCTCGTCGCTGCAGGAGGAGCATCACGTGCGGAGCGCGTGGGAGCTCATCAAGAAGACGACCACCGAGATGATGAACTAAGTAAAGAGAGGATTACAAATAAATACACATATTTAGAACACATATACGTTTTTGATTTTTTTTGGGGGTTTTAGATGCGAATCTGTTGATTCATTNTGTGAGCTATTTATACCTATGGATATATGGATCAAAATAAATTATTATTTGGGTTGTAATTTTTTTAAAAGATGAACTGATACTATACCTTA] [+] EMBL BI306681 [AGGAATAAGCTTGGGCCGCTCAAGAACCACGCCAGCGACTCCGGCGAGGTCACCGACCTCAAGGACATGCAGGTCGGCGTCGGCCGCCGCTTCCGGGGGCTCAAGCTCTGGATGGTCATGCGCACCTACGGCGTCGCGAAGCTGCAGGAGCACATCCGGAGCGACGTCGCCATGGCCAAGGTGTTCGAGGACCTCGTCCGCGGCGACGACAGGTTCGAGGTCGTCGTGCCGAGGAACTTCGCGCTCGTCTGCTTCAGGATCAGGGCCGGCGCCGGCGCCGCCGCCGCGACGGAGGAGGACGCCGACGAGGCGAACCGCGAGCTGATGGAGCGGCTGAACAAGACCGGCAAGGCGTACGTGGCGCACACGGTGGTCGGCGGCAGGTTCGTGCTGCGCTTCGCGGTGGGCTCGTCGCTGCAGGAGGAGCATCACGTGCGGAGCGCGTGGGAGCTCATCAAGAAGACGACCACCGAGATGATGAACTAAGTAAAGAGAGGATTACAAATAAATACACATATTTAGAACACATATACGTTTTTGATTTTTTTTGGGGGTTTTAGATGCGAATCTGTTGATTCATTNTGTGAGCTATTTATACCTATGGATATATGGATCAAAATAAATTATTATTTGGGTTGTAATTTTTTTAAAAGATGAACTGATACTATACCTTA] [+] EMBL CB964835 [ AGCTTGGGCCGCTCAAGAA CACGCCAGCGACT CGGCGAGGTCACCGACCTCAA GACATGCAGGTCGGCGT GGCCGCCGCTTCCGGGGGCTCAAGCTCTGGATGGTCATGCGCACCTACG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4733#0 ACACCAACCTAGCTAACTCACTCACTCACTCCTTCTTCTTGCGACCTAGCTATCGAGCTA 60 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 GAGCTTCCAAAACCCTAGCTAGCTAGCTGAGACAGTTAGTTTCATCTCGAACTAGTTGTT 120 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 GATATGGGCAGCTTGGACACCAACCCCACGGCCTTCTCCGCCTTCCCCGCCGGCGAGGGT 180 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 GAAACCTTCCAGCCGCTCAACGCCGATGATGTCCGGTCCTACCTCCACAAGGCGGTGGAC 240 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 TTCATCTCGGACTACTACAAGTCCGTGGAGTCCATGCCGGTGCTGCCCAATGTCAAGCCG 300 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 GGGTACCTGCAGGACGAGCTCAGGGCCTCGCCGCCGACGTACTCGGCGCCGTTCGACGTC 360 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 ACCATGAAGGAGCTCCGGAGCTCCGTCGTCCCCGGGATGACGCACTGGGCGAGCCCCAAC 420 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 TTCTTCGCGTTTTTCCCCTCCACGAATAGTGCGGCCGCCATTGCCGGCGACCTCATCGCG 480 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 TCGGCGATGAACACGGTCGGGTTCACGTGGCAGGCGTCGCCGGCGGCCACCGAGATGGAG 540 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 GTGCTCGCGCTGGACTGGCTCGCGCAGATGCTCAACCTGCCGACGAGCTTCATGAACCGC 600 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 ACCGGCGAGGGGCGTGGCACCGGCGGTGGGGTTATTCTGGGGACGACCAGCGAGGCGATG 660 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 CTCGTCACGCTCGTTGCCGCGCGCGACGCCGCGCTGCGGCGGAGCGGCAGCGACGGCGTG 720 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 GCGGGACTCCACCGGCTCGCCGTGTACGCCGCCGACCAGACGCACTCCACGTTCTTCAAG 780 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 GCGTGCCGCCTCGCCGGGTTTGATCCGGCGAACATCCGGTCGATCCCCACCGGGGCCGAG 840 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 ACCGACTACGGCCTCGACCCGGCGAGGCTGCTGGAGGCGATGCAGGCCGACGCCGACGCC 900 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 GGGCTGGTGCCCACCTACGTGTGCGCCACGGTGGGCACCACGTCGTCCAACGCCGTCGAC 960 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 CCGGTGGGCGCCGTGGCCGACGTCGCGGCGAGGTTCGCCGCGTGGGTGCACGTCGACGCG 1020 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 GCGTACGCCGGCAGCGCGTGCATCTGCCCGGAGTTCAGGCACCACCTCGACGGCGTGGAG 1080 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 CGCGTGGACTCCATCAGCATGAGCCCCCACAAATGGCTGATGACCTGCCTCGACTGCACC 1140 consensus_4733#1 ------------------------------------------------------------ consensus_4733#0 TGCCTCTACGTGCGCGACACCCACCGCCTCACCGGCTCCCTCGAGACCAACCCGGAGTAC 1200 consensus_4733#1 ------------------------------------------AGGAATAAGCTTGGGCCG 18 ** ** * * * consensus_4733#0 CTCAAGAACCACGCCAGCGACTCCGGCGAGGTCACCGACCTCAAGGACATGCAGGTCGGC 1260 consensus_4733#1 CTCAAGAACCACGCCAGCGACTCCGGCGAGGTCACCGACCTCAAGGACATGCAGGTCGGC 78 ************************************************************ consensus_4733#0 GTCGGCCGCCGCTTCCGGGGGCTCAAGCTCTGGATGGTCATGCGCACCTACGGCGTCGCC 1320 consensus_4733#1 GTCGGCCGCCGCTTCCGGGGGCTCAAGCTCTGGATGGTCATGCGCACCTACGGCGTCGCG 138 *********************************************************** consensus_4733#0 AAGCTGCAGGAGCACATCCGGAGCGACGTCGCCATGGCCAAGGTGTTCGAGGACCTCGTC 1380 consensus_4733#1 AAGCTGCAGGAGCACATCCGGAGCGACGTCGCCATGGCCAAGGTGTTCGAGGACCTCGTC 198 ************************************************************ consensus_4733#0 CGCGGCGACGACAGGTTCGAGGTCGTCGTGCCGAGGAACTTCGCTCTCGTCTGCTTCAGG 1440 consensus_4733#1 CGCGGCGACGACAGGTTCGAGGTCGTCGTGCCGAGGAACTTCGCGCTCGTCTGCTTCAGG 258 ******************************************** *************** consensus_4733#0 ATCAGGGCCGGCGCCGGCGCCGCCGCCGCGACGGAGGAGGACGCCGACGAGGCGAACCGC 1500 consensus_4733#1 ATCAGGGCCGGCGCCGGCGCCGCCGCCGCGACGGAGGAGGACGCCGACGAGGCGAACCGC 318 ************************************************************ consensus_4733#0 GAGCTGATGGAGCGGCTGAACAAGACCGGCAAGGCGTACGTGGCGCACACGGTGGTCGGC 1560 consensus_4733#1 GAGCTGATGGAGCGGCTGAACAAGACCGGCAAGGCGTACGTGGCGCACACGGTGGTCGGC 378 ************************************************************ consensus_4733#0 GGCAGGTTCGTGCTGCGCTTCGCGGTGGGCTCGTCGCTGCAGGAAGAGCATCACGTGCGG 1620 consensus_4733#1 GGCAGGTTCGTGCTGCGCTTCGCGGTGGGCTCGTCGCTGCAGGAGGAGCATCACGTGCGG 438 ******************************************** *************** consensus_4733#0 AGCGCGTGGGAGCTCATCAAGAAGACGACCACCGAGATGATGAACTAAGTAAAGAGAAGA 1680 consensus_4733#1 AGCGCGTGGGAGCTCATCAAGAAGACGACCACCGAGATGATGAACTAAGTAAAGAGAGGA 498 ********************************************************* ** consensus_4733#0 TTACAAATAAATACACATATTTAGAACACATATACGTTTTTGATTTTTTTTTTTGGGGTT 1740 consensus_4733#1 TTACAAATAAATACACATATTTAGAACACATATACGTTTTTGATTTTTTTTG--GGGGTT 556 *************************************************** ****** consensus_4733#0 TTAGATGCGAATCTGTTGATTCATTTTGTGAGCTATTTATACCTATGGATATATGGATCA 1800 consensus_4733#1 TTAGATGCGAATCTGTTGATTCATTNTGTGAGCTATTTATACCTATGGATATATGGATCA 616 ************************* ********************************** consensus_4733#0 AAATAAATTATTATTTGG-TTGTAATTTTTTTAAAAGATGAACTGATAC--------- 1848 consensus_4733#1 AAATAAATTATTATTTGGGTTGTAATTTTTTTAAAAGATGAACTGATACTATACCTTA 674 ****************** ****************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||