|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4733#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1848 fasta sequence
[ACACCAACCTAGCTAACTCACTCACTCACTCCTTCTTCTTGCGACCTAGCTATCGAGCTAGAGCTTCCAAAACCCTAGCTAGCTAGCTGAGACAGTTAGTTTCATCTCGAACTAGTTGTTGATATGGGCAGCTTGGACACCAACCCCACGGCCTTCTCCGCCTTCCCCGCCGGCGAGGGTGAAACCTTCCAGCCGCTCAACGCCGATGATGTCCGGTCCTACCTCCACAAGGCGGTGGACTTCATCTCGGACTACTACAAGTCCGTGGAGTCCATGCCGGTGCTGCCCAATGTCAAGCCGGGGTACCTGCAGGACGAGCTCAGGGCCTCGCCGCCGACGTACTCGGCGCCGTTCGACGTCACCATGAAGGAGCTCCGGAGCTCCGTCGTCCCCGGGATGACGCACTGGGCGAGCCCCAACTTCTTCGCGTTTTTCCCCTCCACGAATAGTGCGGCCGCCATTGCCGGCGACCTCATCGCGTCGGCGATGAACACGGTCGGGTTCACGTGGCAGGCGTCGCCGGCGGCCACCGAGATGGAGGTGCTCGCGCTGGACTGGCTCGCGCAGATGCTCAACCTGCCGACGAGCTTCATGAACCGCACCGGCGAGGGGCGTGGCACCGGCGGTGGGGTTATTCTGGGGACGACCAGCGAGGCGATGCTCGTCACGCTCGTTGCCGCGCGCGACGCCGCGCTGCGGCGGAGCGGCAGCGACGGCGTGGCGGGACTCCACCGGCTCGCCGTGTACGCCGCCGACCAGACGCACTCCACGTTCTTCAAGGCGTGCCGCCTCGCCGGGTTTGATCCGGCGAACATCCGGTCGATCCCCACCGGGGCCGAGACCGACTACGGCCTCGACCCGGCGAGGCTGCTGGAGGCGATGCAGGCCGACGCCGACGCCGGGCTGGTGCCCACCTACGTGTGCGCCACGGTGGGCACCACGTCGTCCAACGCCGTCGACCCGGTGGGCGCCGTGGCCGACGTCGCGGCGAGGTTCGCCGCGTGGGTGCACGTCGACGCGGCGTACGCCGGCAGCGCGTGCATCTGCCCGGAGTTCAGGCACCACCTCGACGGCGTGGAGCGCGTGGACTCCATCAGCATGAGCCCCCACAAATGGCTGATGACCTGCCTCGACTGCACCTGCCTCTACGTGCGCGACACCCACCGCCTCACCGGCTCCCTCGAGACCAACCCGGAGTACCTCAAGAACCACGCCAGCGACTCCGGCGAGGTCACCGACCTCAAGGACATGCAGGTCGGCGTCGGCCGCCGCTTCCGGGGGCTCAAGCTCTGGATGGTCATGCGCACCTACGGCGTCGCCAAGCTGCAGGAGCACATCCGGAGCGACGTCGCCATGGCCAAGGTGTTCGAGGACCTCGTCCGCGGCGACGACAGGTTCGAGGTCGTCGTGCCGAGGAACTTCGCTCTCGTCTGCTTCAGGATCAGGGCCGGCGCCGGCGCCGCCGCCGCGACGGAGGAGGACGCCGACGAGGCGAACCGCGAGCTGATGGAGCGGCTGAACAAGACCGGCAAGGCGTACGTGGCGCACACGGTGGTCGGCGGCAGGTTCGTGCTGCGCTTCGCGGTGGGCTCGTCGCTGCAGGAAGAGCATCACGTGCGGAGCGCGTGGGAGCTCATCAAGAAGACGACCACCGAGATGATGAACTAAGTAAAGAGAAGATTACAAATAAATACACATATTTAGAACACATATACGTTTTTGATTTTTTTTTTTGGGGTTTTAGATGCGAATCTGTTGATTCATTTTGTGAGCTATTTATACCTATGGATATATGGATCAAAATAAATTATTATTTGGTTGTAATTTTTTTAAAAGATGAACTGATAC]
[+] EMBL AK069031 [ACACCAACCTAGCTAACTCACTCACTCACTCCTTCTTCTTGCGACCTAGCTATCGAGCTAGAGCTTCCAAAACCCTAGCTAGCTAGCTGAGACAGTTAGTTTCATCTCGAACTAGTTGTTGATATGGGCAGCTTGGACACCAACCCCACGGCCTTCTCCGCCTTCCCCGCCGGCGAGGGTGAAACCTTCCAGCCGCTCAACGCCGATGATGTCCGGTCCTACCTCCACAAGGCGGTGGACTTCATCTCGGACTACTACAAGTCCGTGGAGTCCATGCCGGTGCTGCCCAATGTCAAGCCGGGGTACCTGCAGGACGAGCTCAGGGCCTCGCCGCCGACGTACTCGGCGCCGTTCGACGTCACCATGAAGGAGCTCCGGAGCTCCGTCGTCCCCGGGATGACGCACTGGGCGAGCCCCAACTTCTTCGCGTTTTTCCCCTCCACGAATAGTGCGGCCGCCATTGCCGGCGACCTCATCGCGTCGGCGATGAACACGGTCGGGTTCACGTGGCAGGCGTCGCCGGCGGCCACCGAGATGGAGGTGCTCGCGCTGGACTGGCTCGCGCAGATGCTCAACCTGCCGACGAGCTTCATGAACCGCACCGGCGAGGGGCGTGGCACCGGCGGTGGGGTTATTCTGGGGACGACCAGCGAGGCGATGCTCGTCACGCTCGTTGCCGCGCGCGACGCCGCGCTGCGGCGGAGCGGCAGCGACGGCGTGGCGGGACTCCACCGGCTCGCCGTGTACGCCGCCGACCAGACGCACTCCACGTTCTTCAAGGCGTGCCGCCTCGCCGGGTTTGATCCGGCGAACATCCGGTCGATCCCCACCGGGGCCGAGACCGACTACGGCCTCGACCCGGCGAGGCTGCTGGAGGCGATGCAGGCCGACGCCGACGCCGGGCTGGTGCCCACCTACGTGTGCGCCACGGTGGGCACCACGTCGTCCAACGCCGTCGACCCGGTGGGCGCCGTGGCCGACGTCGCGGCGAGGTTCGCCGCGTGGGTGCACGTCGACGCGGCGTACGCCGGCAGCGCGTGCATCTGCCCGGAGTTCAGGCACCACCTCGACGGCGTGGAGCGCGTGGACTCCATCAGCATGAGCCCCCACAAATGGCTGATGACCTGCCTCGACTGCACCTGCCTCTACGTGCGCGACACCCACCGCCTCACCGGCTCCCTCGAGACCAACCCGGAGTACCTCAAGAACCACGCCAGCGACTCCGGCGAGGTCACCGACCTCAAGGACATGCAGGTCGGCGTCGGCCGCCGCTTCCGGGGGCTCAAGCTCTGGATGGTCATGCGCACCTACGGCGTCGCCAAGCTGCAGGAGCACATCCGGAGCGACGTCGCCATGGCCAAGGTGTTCGAGGACCTCGTCCGCGGCGACGACAGGTTCGAGGTCGTCGTGCCGAGGAACTTCGCTCTCGTCTGCTTCAGGATCAGGGCCGGCGCCGGCGCCGCCGCCGCGACGGAGGAGGACGCCGACGAGGCGAACCGCGAGCTGATGGAGCGGCTGAACAAGACCGGCAAGGCGTACGTGGCGCACACGGTGGTCGGCGGCAGGTTCGTGCTGCGCTTCGCGGTGGGCTCGTCGCTGCAGGAAGAGCATCACGTGCGGAGCGCGTGGGAGCTCATCAAGAAGACGACCACCGAGATGATGAACTAAGTAAAGAGAAGATTACAAATAAATACACATATTTAGAACACATATACGTTTTTGATTTTTTTTTTTGGGGTTTTAGATGCGAATCTGTTGATTCATTTTGTGAGCTATTTATACCTATGGATATATGGATCAAAATAAATTATTATTTGGTTGTAATTTTTTTAAAAGATGAACTGATAC]
consensusID : consensus_4733#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 674 fasta sequence
[AGGAATAAGCTTGGGCCGCTCAAGAACCACGCCAGCGACTCCGGCGAGGTCACCGACCTCAAGGACATGCAGGTCGGCGTCGGCCGCCGCTTCCGGGGGCTCAAGCTCTGGATGGTCATGCGCACCTACGGCGTCGCGAAGCTGCAGGAGCACATCCGGAGCGACGTCGCCATGGCCAAGGTGTTCGAGGACCTCGTCCGCGGCGACGACAGGTTCGAGGTCGTCGTGCCGAGGAACTTCGCGCTCGTCTGCTTCAGGATCAGGGCCGGCGCCGGCGCCGCCGCCGCGACGGAGGAGGACGCCGACGAGGCGAACCGCGAGCTGATGGAGCGGCTGAACAAGACCGGCAAGGCGTACGTGGCGCACACGGTGGTCGGCGGCAGGTTCGTGCTGCGCTTCGCGGTGGGCTCGTCGCTGCAGGAGGAGCATCACGTGCGGAGCGCGTGGGAGCTCATCAAGAAGACGACCACCGAGATGATGAACTAAGTAAAGAGAGGATTACAAATAAATACACATATTTAGAACACATATACGTTTTTGATTTTTTTTGGGGGTTTTAGATGCGAATCTGTTGATTCATTNTGTGAGCTATTTATACCTATGGATATATGGATCAAAATAAATTATTATTTGGGTTGTAATTTTTTTAAAAGATGAACTGATACTATACCTTA]
[+] EMBL BI306681 [AGGAATAAGCTTGGGCCGCTCAAGAACCACGCCAGCGACTCCGGCGAGGTCACCGACCTCAAGGACATGCAGGTCGGCGTCGGCCGCCGCTTCCGGGGGCTCAAGCTCTGGATGGTCATGCGCACCTACGGCGTCGCGAAGCTGCAGGAGCACATCCGGAGCGACGTCGCCATGGCCAAGGTGTTCGAGGACCTCGTCCGCGGCGACGACAGGTTCGAGGTCGTCGTGCCGAGGAACTTCGCGCTCGTCTGCTTCAGGATCAGGGCCGGCGCCGGCGCCGCCGCCGCGACGGAGGAGGACGCCGACGAGGCGAACCGCGAGCTGATGGAGCGGCTGAACAAGACCGGCAAGGCGTACGTGGCGCACACGGTGGTCGGCGGCAGGTTCGTGCTGCGCTTCGCGGTGGGCTCGTCGCTGCAGGAGGAGCATCACGTGCGGAGCGCGTGGGAGCTCATCAAGAAGACGACCACCGAGATGATGAACTAAGTAAAGAGAGGATTACAAATAAATACACATATTTAGAACACATATACGTTTTTGATTTTTTTTGGGGGTTTTAGATGCGAATCTGTTGATTCATTNTGTGAGCTATTTATACCTATGGATATATGGATCAAAATAAATTATTATTTGGGTTGTAATTTTTTTAAAAGATGAACTGATACTATACCTTA]
[+] EMBL CB964835 [ AGCTTGGGCCGCTCAAGAA CACGCCAGCGACT CGGCGAGGTCACCGACCTCAA GACATGCAGGTCGGCGT GGCCGCCGCTTCCGGGGGCTCAAGCTCTGGATGGTCATGCGCACCTACG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4733#0 ACACCAACCTAGCTAACTCACTCACTCACTCCTTCTTCTTGCGACCTAGCTATCGAGCTA 60
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 GAGCTTCCAAAACCCTAGCTAGCTAGCTGAGACAGTTAGTTTCATCTCGAACTAGTTGTT 120
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 GATATGGGCAGCTTGGACACCAACCCCACGGCCTTCTCCGCCTTCCCCGCCGGCGAGGGT 180
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 GAAACCTTCCAGCCGCTCAACGCCGATGATGTCCGGTCCTACCTCCACAAGGCGGTGGAC 240
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 TTCATCTCGGACTACTACAAGTCCGTGGAGTCCATGCCGGTGCTGCCCAATGTCAAGCCG 300
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 GGGTACCTGCAGGACGAGCTCAGGGCCTCGCCGCCGACGTACTCGGCGCCGTTCGACGTC 360
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 ACCATGAAGGAGCTCCGGAGCTCCGTCGTCCCCGGGATGACGCACTGGGCGAGCCCCAAC 420
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 TTCTTCGCGTTTTTCCCCTCCACGAATAGTGCGGCCGCCATTGCCGGCGACCTCATCGCG 480
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 TCGGCGATGAACACGGTCGGGTTCACGTGGCAGGCGTCGCCGGCGGCCACCGAGATGGAG 540
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 GTGCTCGCGCTGGACTGGCTCGCGCAGATGCTCAACCTGCCGACGAGCTTCATGAACCGC 600
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 ACCGGCGAGGGGCGTGGCACCGGCGGTGGGGTTATTCTGGGGACGACCAGCGAGGCGATG 660
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 CTCGTCACGCTCGTTGCCGCGCGCGACGCCGCGCTGCGGCGGAGCGGCAGCGACGGCGTG 720
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 GCGGGACTCCACCGGCTCGCCGTGTACGCCGCCGACCAGACGCACTCCACGTTCTTCAAG 780
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 GCGTGCCGCCTCGCCGGGTTTGATCCGGCGAACATCCGGTCGATCCCCACCGGGGCCGAG 840
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 ACCGACTACGGCCTCGACCCGGCGAGGCTGCTGGAGGCGATGCAGGCCGACGCCGACGCC 900
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 GGGCTGGTGCCCACCTACGTGTGCGCCACGGTGGGCACCACGTCGTCCAACGCCGTCGAC 960
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 CCGGTGGGCGCCGTGGCCGACGTCGCGGCGAGGTTCGCCGCGTGGGTGCACGTCGACGCG 1020
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 GCGTACGCCGGCAGCGCGTGCATCTGCCCGGAGTTCAGGCACCACCTCGACGGCGTGGAG 1080
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 CGCGTGGACTCCATCAGCATGAGCCCCCACAAATGGCTGATGACCTGCCTCGACTGCACC 1140
consensus_4733#1 ------------------------------------------------------------
consensus_4733#0 TGCCTCTACGTGCGCGACACCCACCGCCTCACCGGCTCCCTCGAGACCAACCCGGAGTAC 1200
consensus_4733#1 ------------------------------------------AGGAATAAGCTTGGGCCG 18
** ** * * *
consensus_4733#0 CTCAAGAACCACGCCAGCGACTCCGGCGAGGTCACCGACCTCAAGGACATGCAGGTCGGC 1260
consensus_4733#1 CTCAAGAACCACGCCAGCGACTCCGGCGAGGTCACCGACCTCAAGGACATGCAGGTCGGC 78
************************************************************
consensus_4733#0 GTCGGCCGCCGCTTCCGGGGGCTCAAGCTCTGGATGGTCATGCGCACCTACGGCGTCGCC 1320
consensus_4733#1 GTCGGCCGCCGCTTCCGGGGGCTCAAGCTCTGGATGGTCATGCGCACCTACGGCGTCGCG 138
***********************************************************
consensus_4733#0 AAGCTGCAGGAGCACATCCGGAGCGACGTCGCCATGGCCAAGGTGTTCGAGGACCTCGTC 1380
consensus_4733#1 AAGCTGCAGGAGCACATCCGGAGCGACGTCGCCATGGCCAAGGTGTTCGAGGACCTCGTC 198
************************************************************
consensus_4733#0 CGCGGCGACGACAGGTTCGAGGTCGTCGTGCCGAGGAACTTCGCTCTCGTCTGCTTCAGG 1440
consensus_4733#1 CGCGGCGACGACAGGTTCGAGGTCGTCGTGCCGAGGAACTTCGCGCTCGTCTGCTTCAGG 258
******************************************** ***************
consensus_4733#0 ATCAGGGCCGGCGCCGGCGCCGCCGCCGCGACGGAGGAGGACGCCGACGAGGCGAACCGC 1500
consensus_4733#1 ATCAGGGCCGGCGCCGGCGCCGCCGCCGCGACGGAGGAGGACGCCGACGAGGCGAACCGC 318
************************************************************
consensus_4733#0 GAGCTGATGGAGCGGCTGAACAAGACCGGCAAGGCGTACGTGGCGCACACGGTGGTCGGC 1560
consensus_4733#1 GAGCTGATGGAGCGGCTGAACAAGACCGGCAAGGCGTACGTGGCGCACACGGTGGTCGGC 378
************************************************************
consensus_4733#0 GGCAGGTTCGTGCTGCGCTTCGCGGTGGGCTCGTCGCTGCAGGAAGAGCATCACGTGCGG 1620
consensus_4733#1 GGCAGGTTCGTGCTGCGCTTCGCGGTGGGCTCGTCGCTGCAGGAGGAGCATCACGTGCGG 438
******************************************** ***************
consensus_4733#0 AGCGCGTGGGAGCTCATCAAGAAGACGACCACCGAGATGATGAACTAAGTAAAGAGAAGA 1680
consensus_4733#1 AGCGCGTGGGAGCTCATCAAGAAGACGACCACCGAGATGATGAACTAAGTAAAGAGAGGA 498
********************************************************* **
consensus_4733#0 TTACAAATAAATACACATATTTAGAACACATATACGTTTTTGATTTTTTTTTTTGGGGTT 1740
consensus_4733#1 TTACAAATAAATACACATATTTAGAACACATATACGTTTTTGATTTTTTTTG--GGGGTT 556
*************************************************** ******
consensus_4733#0 TTAGATGCGAATCTGTTGATTCATTTTGTGAGCTATTTATACCTATGGATATATGGATCA 1800
consensus_4733#1 TTAGATGCGAATCTGTTGATTCATTNTGTGAGCTATTTATACCTATGGATATATGGATCA 616
************************* **********************************
consensus_4733#0 AAATAAATTATTATTTGG-TTGTAATTTTTTTAAAAGATGAACTGATAC--------- 1848
consensus_4733#1 AAATAAATTATTATTTGGGTTGTAATTTTTTTAAAAGATGAACTGATACTATACCTTA 674
****************** ******************************
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||