These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1280 fasta sequence [TCCTTCTTCGGTTCTTCCTGCCGCCGCCGCCGCCTCTCGCCGTCGCCGGCGGCTTCTACCTCTCGTTTGCCCTTCTGGTGCGCCCGATCTCTTGCATAGCCTACGACAATGGCCACCTCCGCCTACGCAGCCACCGTCGCCGGGGAAGCAGCGGCGGCGGCGGCGTCGCCGTCCCGTCGTGTCCTTGCCGGTGGCCGACCTCCTCCGCCCTGCATCTCCTTCCTCTCCAAATCGCCGTCCTGGTGCGCCTCGATCTCTCTCCCTCCAGGGCCCCGCCGCGCCGCCGCCGCGGCCGAGGAGAGGGTGGAGGAGGAGGAGCCGACCTGGGTGGAGCTGGAGCCGATCGGCAGCGAGCAGCAGCTGGAGCGTGCCCTCGCGGAGGCGCAGCAGCTCGGCCTCCCCATCGTCCTTCTCTGGATGGCAAGCTGGTGCAGGAAGTGTATATATTTGAAGCCTAAACTAGAGAATTTGGCAGCAGAATGCTATCCAAGAATTCGGTTCTACTGTGTCGATGTCAATGCTGTTCCTCAAAAGCTTGTCAATCGTGCAGGAGTAACAAAGATGCCTTCAATACAGCTGTGGAGTGACTCTCAAAAACAGGCTGAGGTGATTGGTGGACACAAATCCTGGCTAGTAATTGACGATGTTCGGAGGATGATCGATCAGGAGGAATGATCCATTATGTCCTTTAGTGCAAATGATGATGTGATGATGTCCAACAGGAAGAATCTTTCAGTATAGCAAATGGAGAAATCAGAAATCAAAAGCCAGTATGAACTCCTTTCAAGAGATCGAGCCATATATTTAAGTATCGAATCGACGAAATTACTACCTCTACAGTCAAATAGGCACTACTACACAAGGCAGCATTTCAATCGTGTTCTCTCCAAATTTGGGGTCGACAGAATTTCACAACCTGTGGCTGCATTCCTGTGGTGTCCTTGATGTATCCATGTGTCTTGTTTGGAAATCTATGCAATTAAAGGCAAAGACTTCTTGCTCATGTACTGTCACAGTACGGGCAAGCATTTAAATTAGTCATTAGATGACAATAATATTTAGTCAATGAGCCTTCAGAGGGCATGTTGAAAGTGTTATGGTTCCAAATCCATATGCTGCACAACTGTGATTGACTTGAACTACTAGTACTACAAAAGATAGCTACAGTGTCAGCCTTTTGCAAAGCAGGTGTTGCTAGTTTTGTTCAGAATAGAAAAACAAGCATGTATGTATATGTTCCTGCTGAACAAAGTATAGTTATCCTTAAAGTTAATTGGGAT] [+] EMBL AK102564 [TCCTTCTTCGGTTCTTCCTGCCGCCGCCGCCGCCTCTCGCCGTCGCCGGCGGCTTCTACCTCTCGTTTGCCCTTCTGGTGCGCCCGATCTCTTGCATAGCCTACGACAATGGCCACCTCCGCCTACGCAGCCACCGTCGCCGGGGAAGCAGCGGCGGCGGCGGCGTCGCCGTCCCGTCGTGTCCTTGCCGGTGGCCGACCTCCTCCGCCCTGCATCTCCTTCCTCTCCAAATCGCCGTCCTGGTGCGCCTCGATCTCTCTCCCTCCAGGGCCCCGCCGCGCCGCCGCCGCGGCCGAGGAGAGGGTGGAGGAGGAGGAGCCGACCTGGGTGGAGCTGGAGCCGATCGGCAGCGAGCAGCAGCTGGAGCGTGCCCTCGCGGAGGCGCAGCAGCTCGGCCTCCCCATCGTCCTTCTCTGGATGGCAAGCTGGTGCAGGAAGTGTATATATTTGAAGCCTAAACTAGAGAATTTGGCAGCAGAATGCTATCCAAGAATTCGGTTCTACTGTGTCGATGTCAATGCTGTTCCTCAAAAGCTTGTCAATCGTGCAGGAGTAACAAAGATGCCTTCAATACAGCTGTGGAGTGACTCTCAAAAACAGGCTGAGGTGATTGGTGGACACAAATCCTGGCTAGTAATTGACGATGTTCGGAGGATGATCGATCAGGAGGAATGATCCATTATGTCCTTTAGTGCAAATGATGATGTGATGATGTCCAACAGGAAGAATCTTTCAGTATAGCAAATGGAGAAATCAGAAATCAAAAGCCAGTATGAACTCCTTTCAAGAGATCGAGCCATATATTTAAGTATCGAATCGACGAAATTACTACCTCTACAGTCAAATAGGCACTACTACACAAGGCAGCATTTCAATCGTGTTCTCTCCAAATTTGGGGTCGACAGAATTTCACAACCTGTGGCTGCATTCCTGTGGTGTCCTTGATGTATCCATGTGTCTTGTTTGGAAATCTATGCAATTAAAGGCAAAGACTTCTTGCTCATGTACTGTCACAGTACGGGCAAGCATTTAAATTAGTCATTAGATGACAATAATATTTAGTCAATGAGCCTTCAGAGGGCATGTTGAAAGTGTTATGGTTCCAAATCCATATGCTGCACAACTGTGATTGACTTGAACTACTAGTACTACAAAAGATAGCTACAGTGTCAGCCTTTTGCAAAGCAGGTGTTGCTAGTTTTGTTCAGAATAGAAAAACAAGCATGTATGTATATGTTCCTGCTGAACAAAGTATAGTTATCCTTAAAGTTAATTGGGAT] consensusID : consensus_4735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence [TGAGCCTTCAGAGGGCATGTTGAAAGTGTTATGGTTCCAAATCCATATGCTGCACAACTGTGATTGACTTGAACTACTAGTACTACAAAAGATAGCTACAGTGTCAGCCTTTTGCAAAGCAGGTGTTGCTAGTTTTGTTCAGAATAGAAAAACAAGCATGTATGTATATGTTCCTGCTGAACAAAGTATAGTTATCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGGCATGCCGTTACGTAACGTAT] [+] EMBL CF329381 [TGAGCCTTCAGAGGGCATGTTGAAAGTGTTATGGTTCCAAATCCATATGCTGCACAACTGTGATTGACTTGAACTACTAGTACTACAAAAGATAGCTACAGTGTCAGCCTTTTGCAAAGCAGGTGTTGCTAGTTTTGTTCAGAATAGAAAAACAAGCATGTATGTATATGTTCCTGCTGAACAAAGTATAGTTATCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGGCATGCCGTTACGTAACGTAT] consensusID : consensus_4735#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [ATGGGCTGAAGGAGTAGAAAATTAGTCAATGAGCCTTCAGAGGGCATGTTGAAAGTGTTATGGTTCCAAATCCATAAAATGGACAACTGTGATTGACTTTAATTACTAGTAGTACAAAAAATAGGTCCAGTGTCAGCCTTTTGCAAAGCAGGTGTTTTTATTTTTGTTCAAAAAAGAAAAACAAGCATGTAGGTATATGTTCCCGATGAACAAAGTATAGTTATCCTTAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF329380 [ATGGGCTGAAGGAGTAGAAAATTAGTCAATGAGCCTTCAGAGGGCATGTTGAAAGTGTTATGGTTCCAAATCCATAAAATGGACAACTGTGATTGACTTTAATTACTAGTAGTACAAAAAATAGGTCCAGTGTCAGCCTTTTGCAAAGCAGGTGTTTTTATTTTTGTTCAAAAAAGAAAAACAAGCATGTAGGTATATGTTCCCGATGAACAAAGTATAGTTATCCTTAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4735#1 ------------------------------------------------------------ consensus_4735#2 ------------------------------------------------------------ consensus_4735#0 TCCTTCTTCGGTTCTTCCTGCCGCCGCCGCCGCCTCTCGCCGTCGCCGGCGGCTTCTACC 60 consensus_4735#1 ------------------------------------------------------------ consensus_4735#2 ------------------------------------------------------------ consensus_4735#0 TCTCGTTTGCCCTTCTGGTGCGCCCGATCTCTTGCATAGCCTACGACAATGGCCACCTCC 120 consensus_4735#1 ------------------------------------------------------------ consensus_4735#2 ------------------------------------------------------------ consensus_4735#0 GCCTACGCAGCCACCGTCGCCGGGGAAGCAGCGGCGGCGGCGGCGTCGCCGTCCCGTCGT 180 consensus_4735#1 ------------------------------------------------------------ consensus_4735#2 ------------------------------------------------------------ consensus_4735#0 GTCCTTGCCGGTGGCCGACCTCCTCCGCCCTGCATCTCCTTCCTCTCCAAATCGCCGTCC 240 consensus_4735#1 ------------------------------------------------------------ consensus_4735#2 ------------------------------------------------------------ consensus_4735#0 TGGTGCGCCTCGATCTCTCTCCCTCCAGGGCCCCGCCGCGCCGCCGCCGCGGCCGAGGAG 300 consensus_4735#1 ------------------------------------------------------------ consensus_4735#2 ------------------------------------------------------------ consensus_4735#0 AGGGTGGAGGAGGAGGAGCCGACCTGGGTGGAGCTGGAGCCGATCGGCAGCGAGCAGCAG 360 consensus_4735#1 ------------------------------------------------------------ consensus_4735#2 ------------------------------------------------------------ consensus_4735#0 CTGGAGCGTGCCCTCGCGGAGGCGCAGCAGCTCGGCCTCCCCATCGTCCTTCTCTGGATG 420 consensus_4735#1 ------------------------------------------------------------ consensus_4735#2 ------------------------------------------------------------ consensus_4735#0 GCAAGCTGGTGCAGGAAGTGTATATATTTGAAGCCTAAACTAGAGAATTTGGCAGCAGAA 480 consensus_4735#1 ------------------------------------------------------------ consensus_4735#2 ------------------------------------------------------------ consensus_4735#0 TGCTATCCAAGAATTCGGTTCTACTGTGTCGATGTCAATGCTGTTCCTCAAAAGCTTGTC 540 consensus_4735#1 ------------------------------------------------------------ consensus_4735#2 ------------------------------------------------------------ consensus_4735#0 AATCGTGCAGGAGTAACAAAGATGCCTTCAATACAGCTGTGGAGTGACTCTCAAAAACAG 600 consensus_4735#1 ------------------------------------------------------------ consensus_4735#2 ------------------------------------------------------------ consensus_4735#0 GCTGAGGTGATTGGTGGACACAAATCCTGGCTAGTAATTGACGATGTTCGGAGGATGATC 660 consensus_4735#1 ------------------------------------------------------------ consensus_4735#2 ------------------------------------------------------------ consensus_4735#0 GATCAGGAGGAATGATCCATTATGTCCTTTAGTGCAAATGATGATGTGATGATGTCCAAC 720 consensus_4735#1 ------------------------------------------------------------ consensus_4735#2 ------------------------------------------------------------ consensus_4735#0 AGGAAGAATCTTTCAGTATAGCAAATGGAGAAATCAGAAATCAAAAGCCAGTATGAACTC 780 consensus_4735#1 ------------------------------------------------------------ consensus_4735#2 ------------------------------------------------------------ consensus_4735#0 CTTTCAAGAGATCGAGCCATATATTTAAGTATCGAATCGACGAAATTACTACCTCTACAG 840 consensus_4735#1 ------------------------------------------------------------ consensus_4735#2 ------------------------------------------------------------ consensus_4735#0 TCAAATAGGCACTACTACACAAGGCAGCATTTCAATCGTGTTCTCTCCAAATTTGGGGTC 900 consensus_4735#1 ------------------------------------------------------------ consensus_4735#2 ------------------------------------------------------------ consensus_4735#0 GACAGAATTTCACAACCTGTGGCTGCATTCCTGTGGTGTCCTTGATGTATCCATGTGTCT 960 consensus_4735#1 ------------------------------------------------------------ consensus_4735#2 ------------------------------------------------------------ consensus_4735#0 TGTTTGGAAATCTATGCAATTAAAGGCAAAGACTTCTTGCTCATGTACTGTCACAGTACG 1020 consensus_4735#1 ----------------------------------------------TGAGCCTTCAGAGG 14 consensus_4735#2 -----------------ATGGGCTGAAGGAGTAGAAAATTAGTCAATGAGCCTTCAGAGG 43 consensus_4735#0 GGCAAGCATTTAAATTAGTCATTAGATGACAATAATATTTAGTCAATGAGCCTTCAGAGG 1080 ************** consensus_4735#1 GCATGTTGAAAGTGTTATGGTTCCAAATCCATATGCTGCACAACTGTGATTGACTTGAAC 74 consensus_4735#2 GCATGTTGAAAGTGTTATGGTTCCAAATCCATAAAATGGACAACTGTGATTGACTTTAAT 103 consensus_4735#0 GCATGTTGAAAGTGTTATGGTTCCAAATCCATATGCTGCACAACTGTGATTGACTTGAAC 1140 ********************************* ** ***************** ** consensus_4735#1 TACTAGTACTACAAAAGATAGCTACAGTGTCAGCCTTTTGCAAAGCAGGTGTTGCTAGTT 134 consensus_4735#2 TACTAGTAGTACAAAAAATAGGTCCAGTGTCAGCCTTTTGCAAAGCAGGTGTTTTTATTT 163 consensus_4735#0 TACTAGTACTACAAAAGATAGCTACAGTGTCAGCCTTTTGCAAAGCAGGTGTTGCTAGTT 1200 ******** ******* **** * ***************************** ** ** consensus_4735#1 TTGTTCAGAATAGAAAAACAAGCATGTATGTATATGTTCCTGCTGAACAAAGTATAGTTA 194 consensus_4735#2 TTGTTCAAAAAAGAAAAACAAGCATGTAGGTATATGTTCCCGATGAACAAAGTATAGTTA 223 consensus_4735#0 TTGTTCAGAATAGAAAAACAAGCATGTATGTATATGTTCCTGCTGAACAAAGTATAGTTA 1260 ******* ** ***************** *********** * ***************** consensus_4735#1 TCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGGCATGCCGTTACGT 254 consensus_4735#2 TCCTTAAAAAAAAAAAAAAAAAAAAAAAA------------------------------- 252 consensus_4735#0 TCCTTAAAGTTAATTGGGAT---------------------------------------- 1280 ******** ** * consensus_4735#1 AACGTAT 261 consensus_4735#2 ------- consensus_4735#0 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||