These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_475#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1293 fasta sequence [GGGTGTGCTGTGTTGTGAGCTGTGCGTGTGAGTTGCGGTTGTCGTGGATGCGGTCGTGTTTGGTGTTGTCAGGTGAGAGCAGTTGGGGATTGGATTTTGTGGCGACCGCGCGTTGGCTCTGCGGCGTGCAAAGATGCCACCACGGCGGTTTTCCTCTCTTCTGTTTCTTGGTTTATTGCGTCGATCTCTTCCTTGATCGTGCTCCTGCTCTTGCCGCCGGCCAATTATCTGTCGCCGCATTCTGCTCCTCTCTGCCCATGCACCATCTTGCCATCTAGGGATGCGTCCTCATCTCCATTGAGTTTGGGTGCACGGGAGGTGTTTGCTGTATTGCCTAAGCGAGTATACTGTGCTTATTCATTCATTTGACACTGTTTTGGGACCTATGAATGAACGGCCTTCCAGTGTCGTAGTGGGGCTCGACTCAGTGTGCGGCGATTACGGTGAAGTCAGGCCGCAGCGCTAGGTTTGTCTGCCCTTGGCAGTCGTTCACACAAAGCGAGGGGCGCCAATTACGGTGGTGCTGGCTTTGCAATAGCGCTACTAAGGCGAAAAGCTAAAGGGAGCGCAGAGGGATCAGCTATCGAAGCATCTCAGAGGGATCTCTGGTTGCAGCGGTAGCGTGCTCGGTGCCGTCCAGACTCAACGTGGTGTGGCAAAGAGGTTTGCTCAAACTGACACTGTGGCGCACAGCAAGACGGGCACTGGATCAGCACTAGAGCAGATACTTGTAGTTTCATGCTGGTTTTACCATCAATGGTGCCACTATTCCTCCATCGAAATGAAGGTAAGCATGGGTTGCATAGATTATGCAGTGAATTTGAATCCACCTTGCTTTTCTAGTTTTCTTTTTTGCTGTCATAGCTGGAGATGAACAAGGTGATGCGCCAGTGGAAGTAACCCATGGAGATGAACAAGGAGAGGGAGGAATTGCTAATTCTTCTGGTTCCATTGTTCTTGAACACGAAGGTGCAACTGATCAAGATGAGGCTAGAGGTATTGTCTGATTGCTACAGTGGTTACAGATTTTGTGCAGAAGTTAAGCTGAAACTCTAGTTCAAAATGAGTACTGCAGTATTGTTAGTTCAAGTTCTCAACTTTTGGAGTTATGGATATATTAGTATAATTTGGTTTTTCTCTATTTGATTTTACTGTTCTAGGAAGTTGTCACCGTTTGTTTCCAATAAACTGTCCCTACTTCAGAGTAGCAGTCATGCTACCTATCTTGTTTATCTTGGTTTACAGAGGCAGGCAAGCTGGCAATTTATAGTACCAGTCCATGAATGGTCAGAT] [+] EMBL AK121944 [GGGTGTGCTGTGTTGTGAGCTGTGCGTGTGAGTTGCGGTTGTCGTGGATGCGGTCGTGTTTGGTGTTGTCAGGTGAGAGCAGTTGGGGATTGGATTTTGTGGCGACCGCGCGTTGGCTCTGCGGCGTGCAAAGATGCCACCACGGCGGTTTTCCTCTCTTCTGTTTCTTGGTTTATTGCGTCGATCTCTTCCTTGATCGTGCTCCTGCTCTTGCCGCCGGCCAATTATCTGTCGCCGCATTCTGCTCCTCTCTGCCCATGCACCATCTTGCCATCTAGGGATGCGTCCTCATCTCCATTGAGTTTGGGTGCACGGGAGGTGTTTGCTGTATTGCCTAAGCGAGTATACTGTGCTTATTCATTCATTTGACACTGTTTTGGGACCTATGAATGAACGGCCTTCCAGTGTCGTAGTGGGGCTCGACTCAGTGTGCGGCGATTACGGTGAAGTCAGGCCGCAGCGCTAGGTTTGTCTGCCCTTGGCAGTCGTTCACACAAAGCGAGGGGCGCCAATTACGGTGGTGCTGGCTTTGCAATAGCGCTACTAAGGCGAAAAGCTAAAGGGAGCGCAGAGGGATCAGCTATCGAAGCATCTCAGAGGGATCTCTGGTTGCAGCGGTAGCGTGCTCGGTGCCGTCCAGACTCAACGTGGTGTGGCAAAGAGGTTTGCTCAAACTGACACTGTGGCGCACAGCAAGACGGGCACTGGATCAGCACTAGAGCAGATACTTGTAGTTTCATGCTGGTTTTACCATCAATGGTGCCACTATTCCTCCATCGAAATGAAGGTAAGCATGGGTTGCATAGATTATGCAGTGAATTTGAATCCACCTTGCTTTTCTAGTTTTCTTTTTTGCTGTCATAGCTGGAGATGAACAAGGTGATGCGCCAGTGGAAGTAACCCATGGAGATGAACAAGGAGAGGGAGGAATTGCTAATTCTTCTGGTTCCATTGTTCTTGAACACGAAGGTGCAACTGATCAAGATGAGGCTAGAGGTATTGTCTGATTGCTACAGTGGTTACAGATTTTGTGCAGAAGTTAAGCTGAAACTCTAGTTCAAAATGAGTACTGCAGTATTGTTAGTTCAAGTTCTCAACTTTTGGAGTTATGGATATATTAGTATAATTTGGTTTTTCTCTATTTGATTTTACTGTTCTAGGAAGTTGTCACCGTTTGTTTCCAATAAACTGTCCCTACTTCAGAGTAGCAGTCATGCTACCTATCTTGTTTATCTTGGTTTACAGAGGCAGGCAAGCTGGCAATTTATAGTACCAGTCCATGAATGGTCAGAT] consensusID : consensus_475#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [TGCCATCCGGACTCGAACGGGGTGTGGAAAAGAGGTGTGCGCACAGCAAGACGAGGACTGGATCAGCACTAGAGCAGATACTGGTAGTTTCATGCTGGTTTTACCATCAATGGTGCCACTATTCCTCCATCGAGATGAAGGTAAGCACGGGTGGTATAGATTTTGTCTAGTTTNTGCAGTGAATTTGAATCCACCTTGCTTTTCTAGTTTTCTTTTTTGCTTTCATAGCTGGAGATGAACAAGGAGAGGGAGGAAGTGCTAATTCTGCTGATTCCATTTTTCTTGAACACGAAGGTGCAACTGATCAGGATGAGGCTAGAGCTATTGTCTGATTGCTACAGTGGTTACAGATTTTGTGCAGAAGTTAAGCTGAAACTCTAGTTCAGAACAGAGTACTTTACTACAGTATTGTAGATCAAGTTCTCAACTTTCGGAGTTATGAATACAATATGAGTATAGTTTGATATTGCCCTAGTTGATTTTACTGTTGTCAAGTTGTCATCCTTAGTTGCCAATACAGTGTCTCTACTTCAGAGTAGCAGTTAGGATGCTTACAGAGACAGGCAATTCAGACTAGTAACAGTCCATGAATCATCAGATATGTTTCTTCGAAACAAAGTTTTACAAGGAGTACATGAATGAACATTCAGACATATTTCCCCCCCAAAAAAAAAAAAAA] [-] EMBL CA760448 [TGCCATCCGGACTCGAACGGGGTGTGGAAAAGAGGTGTGCGCACAGCAAGACGAGGACTGGATCAGCACTAGAGCAGATACTGGTAGTTTCATGCTGGTTTTACCATCAATGGTGCCACTATTCCTCCATCGAGATGAAGGTAAGCACGGGTGGTATAGATTTTGTCTAGTTTNTGCAGTGAATTTGAATCCACCTTGCTTTTCTAGTTTTCTTTTTTGCTTTCATAGCTGGAGATGAACAAGGAGAGGGAGGAAGTGCTAATTCTGCTGATTCCATTTTTCTTGAACACGAAGGTGCAACTGATCAGGATGAGGCTAGAGCTATTGTCTGATTGCTACAGTGGTTACAGATTTTGTGCAGAAGTTAAGCTGAAACTCTAGTTCAGAACAGAGTACTTTACTACAGTATTGTAGATCAAGTTCTCAACTTTCGGAGTTATGAATACAATATGAGTATAGTTTGATATTGCCCTAGTTGATTTTACTGTTGTCAAGTTGTCATCCTTAGTTGCCAATACAGTGTCTCTACTTCAGAGTAGCAGTTAGGATGCTTACAGAGACAGGCAATTCAGACTAGTAACAGTCCATGAATCATCAGATATGTTTCTTCGAAACAAAGTTTTACAAGGAGTACATGAATGAACATTCAGACATATTTCCCCCCCAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_475#0 GGGTGTGCTGTGTTGTGAGCTGTGCGTGTGAGTTGCGGTTGTCGTGGATGCGGTCGTGTT 60 consensus_475#1 ------------------------------------------------------------ consensus_475#0 TGGTGTTGTCAGGTGAGAGCAGTTGGGGATTGGATTTTGTGGCGACCGCGCGTTGGCTCT 120 consensus_475#1 ------------------------------------------------------------ consensus_475#0 GCGGCGTGCAAAGATGCCACCACGGCGGTTTTCCTCTCTTCTGTTTCTTGGTTTATTGCG 180 consensus_475#1 ------------------------------------------------------------ consensus_475#0 TCGATCTCTTCCTTGATCGTGCTCCTGCTCTTGCCGCCGGCCAATTATCTGTCGCCGCAT 240 consensus_475#1 ------------------------------------------------------------ consensus_475#0 TCTGCTCCTCTCTGCCCATGCACCATCTTGCCATCTAGGGATGCGTCCTCATCTCCATTG 300 consensus_475#1 ------------------------------------------------------------ consensus_475#0 AGTTTGGGTGCACGGGAGGTGTTTGCTGTATTGCCTAAGCGAGTATACTGTGCTTATTCA 360 consensus_475#1 ------------------------------------------------------------ consensus_475#0 TTCATTTGACACTGTTTTGGGACCTATGAATGAACGGCCTTCCAGTGTCGTAGTGGGGCT 420 consensus_475#1 ------------------------------------------------------------ consensus_475#0 CGACTCAGTGTGCGGCGATTACGGTGAAGTCAGGCCGCAGCGCTAGGTTTGTCTGCCCTT 480 consensus_475#1 ------------------------------------------------------------ consensus_475#0 GGCAGTCGTTCACACAAAGCGAGGGGCGCCAATTACGGTGGTGCTGGCTTTGCAATAGCG 540 consensus_475#1 ------------------------------------------------------------ consensus_475#0 CTACTAAGGCGAAAAGCTAAAGGGAGCGCAGAGGGATCAGCTATCGAAGCATCTCAGAGG 600 consensus_475#1 ------------------------------------------------------------ consensus_475#0 GATCTCTGGTTGCAGCGGTAGCGTGCTCGGTGCCGTCCAGACTC-AACGTGGTGTGGCAA 659 consensus_475#1 ------------------------------TGCCATCCGGACTCGAACGGGGTGTGGAAA 30 **** *** ***** **** ******* ** consensus_475#0 AGAGGTTTGCTCAAACTGACACTGTGGCGCACAGCAAGACGGGCACTGGATCAGCACTAG 719 consensus_475#1 AGAGGTGTG------------------CGCACAGCAAGACGAGGACTGGATCAGCACTAG 72 ****** ** ************** * **************** consensus_475#0 AGCAGATACTTGTAGTTTCATGCTGGTTTTACCATCAATGGTGCCACTATTCCTCCATCG 779 consensus_475#1 AGCAGATACTGGTAGTTTCATGCTGGTTTTACCATCAATGGTGCCACTATTCCTCCATCG 132 ********** ************************************************* consensus_475#0 AAATGAAGGTAAGCATGGGTTGCATAGATT-----------ATGCAGTGAATTTGAATCC 828 consensus_475#1 AGATGAAGGTAAGCACGGGTGGTATAGATTTTGTCTAGTTTNTGCAGTGAATTTGAATCC 192 * ************* **** * ******* ****************** consensus_475#0 ACCTTGCTTTTCTAGTTTTCTTTTTTGCTGTCATAGCTGGAGATGAACAAGGTGATGCGC 888 consensus_475#1 ACCTTGCTTTTCTAGTTTTCTTTTTTGCTTTCATAGCTGGAGATGAACAAGG-------- 244 ***************************** ********************** consensus_475#0 CAGTGGAAGTAACCCATGGAGATGAACAAGGAGAGGGAGGAATTGCTAATTCTTCTGGTT 948 consensus_475#1 -------------------------------AGAGGGAGGAAGTGCTAATTCTGCTGATT 273 *********** ********** *** ** consensus_475#0 CCATTGTTCTTGAACACGAAGGTGCAACTGATCAAGATGAGGCTAGAGGTATTGTCTGAT 1008 consensus_475#1 CCATTTTTCTTGAACACGAAGGTGCAACTGATCAGGATGAGGCTAGAGCTATTGTCTGAT 333 ***** **************************** ************* *********** consensus_475#0 TGCTACAGTGGTTACAGATTTTGTGCAGAAGTTAAGCTGAAACTCTAGTTCAAAATGAG- 1067 consensus_475#1 TGCTACAGTGGTTACAGATTTTGTGCAGAAGTTAAGCTGAAACTCTAGTTCAGAACAGAG 393 **************************************************** ** consensus_475#0 -----TACTGCAGTATTGTTAGTTCAAGTTCTCAACTTTTGGAGTTATGGATA---TATT 1119 consensus_475#1 TACTTTACTACAGTATTGT-AGATCAAGTTCTCAACTTTCGGAGTTATGAATACAATATG 452 **** ********* ** **************** ********* *** *** consensus_475#0 AGTATAATTTGGTTTTTCTCTATTTGATTTTACTGTTCTAGGAAGTTGTCACCGTTTGTT 1179 consensus_475#1 AGTATAGTTTGATATTGCCCTAGTTGATTTTACTGTTGTC--AAGTTGTCATCCTTAGTT 510 ****** **** * ** * *** ************** * ********* * ** *** consensus_475#0 TCCAATAAACTGTCCCTACTTCAGAGTAGCAGTCATGCTACCTA--------------TC 1225 consensus_475#1 GCCAATACAGTGTCTCTACTTCAGAGTAGCAGTTAGGATGCTTACAGAGACAGGCAATTC 570 ****** * **** ****************** * * * * ** ** consensus_475#0 TTGTTTATCTTGGTTTACAGA--GGCAGGCAAGCTGGC--------AATTTATAGTACCA 1275 consensus_475#1 AGACTAGTAACAGTCCATGAATCATCAGATATGTTTCTTCGAAACAAAGTTTTACAAGGA 630 * * ** * * *** * * * ** ** ** * * consensus_475#0 GTCCATGAATGG----TCAGAT--------------------------- 1293 consensus_475#1 GTACATGAATGAACATTCAGACATATTTCCCCCCCAAAAAAAAAAAAAA 679 ** ******** ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||