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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_475#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1293 fasta sequence
[GGGTGTGCTGTGTTGTGAGCTGTGCGTGTGAGTTGCGGTTGTCGTGGATGCGGTCGTGTTTGGTGTTGTCAGGTGAGAGCAGTTGGGGATTGGATTTTGTGGCGACCGCGCGTTGGCTCTGCGGCGTGCAAAGATGCCACCACGGCGGTTTTCCTCTCTTCTGTTTCTTGGTTTATTGCGTCGATCTCTTCCTTGATCGTGCTCCTGCTCTTGCCGCCGGCCAATTATCTGTCGCCGCATTCTGCTCCTCTCTGCCCATGCACCATCTTGCCATCTAGGGATGCGTCCTCATCTCCATTGAGTTTGGGTGCACGGGAGGTGTTTGCTGTATTGCCTAAGCGAGTATACTGTGCTTATTCATTCATTTGACACTGTTTTGGGACCTATGAATGAACGGCCTTCCAGTGTCGTAGTGGGGCTCGACTCAGTGTGCGGCGATTACGGTGAAGTCAGGCCGCAGCGCTAGGTTTGTCTGCCCTTGGCAGTCGTTCACACAAAGCGAGGGGCGCCAATTACGGTGGTGCTGGCTTTGCAATAGCGCTACTAAGGCGAAAAGCTAAAGGGAGCGCAGAGGGATCAGCTATCGAAGCATCTCAGAGGGATCTCTGGTTGCAGCGGTAGCGTGCTCGGTGCCGTCCAGACTCAACGTGGTGTGGCAAAGAGGTTTGCTCAAACTGACACTGTGGCGCACAGCAAGACGGGCACTGGATCAGCACTAGAGCAGATACTTGTAGTTTCATGCTGGTTTTACCATCAATGGTGCCACTATTCCTCCATCGAAATGAAGGTAAGCATGGGTTGCATAGATTATGCAGTGAATTTGAATCCACCTTGCTTTTCTAGTTTTCTTTTTTGCTGTCATAGCTGGAGATGAACAAGGTGATGCGCCAGTGGAAGTAACCCATGGAGATGAACAAGGAGAGGGAGGAATTGCTAATTCTTCTGGTTCCATTGTTCTTGAACACGAAGGTGCAACTGATCAAGATGAGGCTAGAGGTATTGTCTGATTGCTACAGTGGTTACAGATTTTGTGCAGAAGTTAAGCTGAAACTCTAGTTCAAAATGAGTACTGCAGTATTGTTAGTTCAAGTTCTCAACTTTTGGAGTTATGGATATATTAGTATAATTTGGTTTTTCTCTATTTGATTTTACTGTTCTAGGAAGTTGTCACCGTTTGTTTCCAATAAACTGTCCCTACTTCAGAGTAGCAGTCATGCTACCTATCTTGTTTATCTTGGTTTACAGAGGCAGGCAAGCTGGCAATTTATAGTACCAGTCCATGAATGGTCAGAT]
[+] EMBL AK121944 [GGGTGTGCTGTGTTGTGAGCTGTGCGTGTGAGTTGCGGTTGTCGTGGATGCGGTCGTGTTTGGTGTTGTCAGGTGAGAGCAGTTGGGGATTGGATTTTGTGGCGACCGCGCGTTGGCTCTGCGGCGTGCAAAGATGCCACCACGGCGGTTTTCCTCTCTTCTGTTTCTTGGTTTATTGCGTCGATCTCTTCCTTGATCGTGCTCCTGCTCTTGCCGCCGGCCAATTATCTGTCGCCGCATTCTGCTCCTCTCTGCCCATGCACCATCTTGCCATCTAGGGATGCGTCCTCATCTCCATTGAGTTTGGGTGCACGGGAGGTGTTTGCTGTATTGCCTAAGCGAGTATACTGTGCTTATTCATTCATTTGACACTGTTTTGGGACCTATGAATGAACGGCCTTCCAGTGTCGTAGTGGGGCTCGACTCAGTGTGCGGCGATTACGGTGAAGTCAGGCCGCAGCGCTAGGTTTGTCTGCCCTTGGCAGTCGTTCACACAAAGCGAGGGGCGCCAATTACGGTGGTGCTGGCTTTGCAATAGCGCTACTAAGGCGAAAAGCTAAAGGGAGCGCAGAGGGATCAGCTATCGAAGCATCTCAGAGGGATCTCTGGTTGCAGCGGTAGCGTGCTCGGTGCCGTCCAGACTCAACGTGGTGTGGCAAAGAGGTTTGCTCAAACTGACACTGTGGCGCACAGCAAGACGGGCACTGGATCAGCACTAGAGCAGATACTTGTAGTTTCATGCTGGTTTTACCATCAATGGTGCCACTATTCCTCCATCGAAATGAAGGTAAGCATGGGTTGCATAGATTATGCAGTGAATTTGAATCCACCTTGCTTTTCTAGTTTTCTTTTTTGCTGTCATAGCTGGAGATGAACAAGGTGATGCGCCAGTGGAAGTAACCCATGGAGATGAACAAGGAGAGGGAGGAATTGCTAATTCTTCTGGTTCCATTGTTCTTGAACACGAAGGTGCAACTGATCAAGATGAGGCTAGAGGTATTGTCTGATTGCTACAGTGGTTACAGATTTTGTGCAGAAGTTAAGCTGAAACTCTAGTTCAAAATGAGTACTGCAGTATTGTTAGTTCAAGTTCTCAACTTTTGGAGTTATGGATATATTAGTATAATTTGGTTTTTCTCTATTTGATTTTACTGTTCTAGGAAGTTGTCACCGTTTGTTTCCAATAAACTGTCCCTACTTCAGAGTAGCAGTCATGCTACCTATCTTGTTTATCTTGGTTTACAGAGGCAGGCAAGCTGGCAATTTATAGTACCAGTCCATGAATGGTCAGAT]
consensusID : consensus_475#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[TGCCATCCGGACTCGAACGGGGTGTGGAAAAGAGGTGTGCGCACAGCAAGACGAGGACTGGATCAGCACTAGAGCAGATACTGGTAGTTTCATGCTGGTTTTACCATCAATGGTGCCACTATTCCTCCATCGAGATGAAGGTAAGCACGGGTGGTATAGATTTTGTCTAGTTTNTGCAGTGAATTTGAATCCACCTTGCTTTTCTAGTTTTCTTTTTTGCTTTCATAGCTGGAGATGAACAAGGAGAGGGAGGAAGTGCTAATTCTGCTGATTCCATTTTTCTTGAACACGAAGGTGCAACTGATCAGGATGAGGCTAGAGCTATTGTCTGATTGCTACAGTGGTTACAGATTTTGTGCAGAAGTTAAGCTGAAACTCTAGTTCAGAACAGAGTACTTTACTACAGTATTGTAGATCAAGTTCTCAACTTTCGGAGTTATGAATACAATATGAGTATAGTTTGATATTGCCCTAGTTGATTTTACTGTTGTCAAGTTGTCATCCTTAGTTGCCAATACAGTGTCTCTACTTCAGAGTAGCAGTTAGGATGCTTACAGAGACAGGCAATTCAGACTAGTAACAGTCCATGAATCATCAGATATGTTTCTTCGAAACAAAGTTTTACAAGGAGTACATGAATGAACATTCAGACATATTTCCCCCCCAAAAAAAAAAAAAA]
[-] EMBL CA760448 [TGCCATCCGGACTCGAACGGGGTGTGGAAAAGAGGTGTGCGCACAGCAAGACGAGGACTGGATCAGCACTAGAGCAGATACTGGTAGTTTCATGCTGGTTTTACCATCAATGGTGCCACTATTCCTCCATCGAGATGAAGGTAAGCACGGGTGGTATAGATTTTGTCTAGTTTNTGCAGTGAATTTGAATCCACCTTGCTTTTCTAGTTTTCTTTTTTGCTTTCATAGCTGGAGATGAACAAGGAGAGGGAGGAAGTGCTAATTCTGCTGATTCCATTTTTCTTGAACACGAAGGTGCAACTGATCAGGATGAGGCTAGAGCTATTGTCTGATTGCTACAGTGGTTACAGATTTTGTGCAGAAGTTAAGCTGAAACTCTAGTTCAGAACAGAGTACTTTACTACAGTATTGTAGATCAAGTTCTCAACTTTCGGAGTTATGAATACAATATGAGTATAGTTTGATATTGCCCTAGTTGATTTTACTGTTGTCAAGTTGTCATCCTTAGTTGCCAATACAGTGTCTCTACTTCAGAGTAGCAGTTAGGATGCTTACAGAGACAGGCAATTCAGACTAGTAACAGTCCATGAATCATCAGATATGTTTCTTCGAAACAAAGTTTTACAAGGAGTACATGAATGAACATTCAGACATATTTCCCCCCCAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_475#0 GGGTGTGCTGTGTTGTGAGCTGTGCGTGTGAGTTGCGGTTGTCGTGGATGCGGTCGTGTT 60
consensus_475#1 ------------------------------------------------------------
consensus_475#0 TGGTGTTGTCAGGTGAGAGCAGTTGGGGATTGGATTTTGTGGCGACCGCGCGTTGGCTCT 120
consensus_475#1 ------------------------------------------------------------
consensus_475#0 GCGGCGTGCAAAGATGCCACCACGGCGGTTTTCCTCTCTTCTGTTTCTTGGTTTATTGCG 180
consensus_475#1 ------------------------------------------------------------
consensus_475#0 TCGATCTCTTCCTTGATCGTGCTCCTGCTCTTGCCGCCGGCCAATTATCTGTCGCCGCAT 240
consensus_475#1 ------------------------------------------------------------
consensus_475#0 TCTGCTCCTCTCTGCCCATGCACCATCTTGCCATCTAGGGATGCGTCCTCATCTCCATTG 300
consensus_475#1 ------------------------------------------------------------
consensus_475#0 AGTTTGGGTGCACGGGAGGTGTTTGCTGTATTGCCTAAGCGAGTATACTGTGCTTATTCA 360
consensus_475#1 ------------------------------------------------------------
consensus_475#0 TTCATTTGACACTGTTTTGGGACCTATGAATGAACGGCCTTCCAGTGTCGTAGTGGGGCT 420
consensus_475#1 ------------------------------------------------------------
consensus_475#0 CGACTCAGTGTGCGGCGATTACGGTGAAGTCAGGCCGCAGCGCTAGGTTTGTCTGCCCTT 480
consensus_475#1 ------------------------------------------------------------
consensus_475#0 GGCAGTCGTTCACACAAAGCGAGGGGCGCCAATTACGGTGGTGCTGGCTTTGCAATAGCG 540
consensus_475#1 ------------------------------------------------------------
consensus_475#0 CTACTAAGGCGAAAAGCTAAAGGGAGCGCAGAGGGATCAGCTATCGAAGCATCTCAGAGG 600
consensus_475#1 ------------------------------------------------------------
consensus_475#0 GATCTCTGGTTGCAGCGGTAGCGTGCTCGGTGCCGTCCAGACTC-AACGTGGTGTGGCAA 659
consensus_475#1 ------------------------------TGCCATCCGGACTCGAACGGGGTGTGGAAA 30
**** *** ***** **** ******* **
consensus_475#0 AGAGGTTTGCTCAAACTGACACTGTGGCGCACAGCAAGACGGGCACTGGATCAGCACTAG 719
consensus_475#1 AGAGGTGTG------------------CGCACAGCAAGACGAGGACTGGATCAGCACTAG 72
****** ** ************** * ****************
consensus_475#0 AGCAGATACTTGTAGTTTCATGCTGGTTTTACCATCAATGGTGCCACTATTCCTCCATCG 779
consensus_475#1 AGCAGATACTGGTAGTTTCATGCTGGTTTTACCATCAATGGTGCCACTATTCCTCCATCG 132
********** *************************************************
consensus_475#0 AAATGAAGGTAAGCATGGGTTGCATAGATT-----------ATGCAGTGAATTTGAATCC 828
consensus_475#1 AGATGAAGGTAAGCACGGGTGGTATAGATTTTGTCTAGTTTNTGCAGTGAATTTGAATCC 192
* ************* **** * ******* ******************
consensus_475#0 ACCTTGCTTTTCTAGTTTTCTTTTTTGCTGTCATAGCTGGAGATGAACAAGGTGATGCGC 888
consensus_475#1 ACCTTGCTTTTCTAGTTTTCTTTTTTGCTTTCATAGCTGGAGATGAACAAGG-------- 244
***************************** **********************
consensus_475#0 CAGTGGAAGTAACCCATGGAGATGAACAAGGAGAGGGAGGAATTGCTAATTCTTCTGGTT 948
consensus_475#1 -------------------------------AGAGGGAGGAAGTGCTAATTCTGCTGATT 273
*********** ********** *** **
consensus_475#0 CCATTGTTCTTGAACACGAAGGTGCAACTGATCAAGATGAGGCTAGAGGTATTGTCTGAT 1008
consensus_475#1 CCATTTTTCTTGAACACGAAGGTGCAACTGATCAGGATGAGGCTAGAGCTATTGTCTGAT 333
***** **************************** ************* ***********
consensus_475#0 TGCTACAGTGGTTACAGATTTTGTGCAGAAGTTAAGCTGAAACTCTAGTTCAAAATGAG- 1067
consensus_475#1 TGCTACAGTGGTTACAGATTTTGTGCAGAAGTTAAGCTGAAACTCTAGTTCAGAACAGAG 393
**************************************************** **
consensus_475#0 -----TACTGCAGTATTGTTAGTTCAAGTTCTCAACTTTTGGAGTTATGGATA---TATT 1119
consensus_475#1 TACTTTACTACAGTATTGT-AGATCAAGTTCTCAACTTTCGGAGTTATGAATACAATATG 452
**** ********* ** **************** ********* *** ***
consensus_475#0 AGTATAATTTGGTTTTTCTCTATTTGATTTTACTGTTCTAGGAAGTTGTCACCGTTTGTT 1179
consensus_475#1 AGTATAGTTTGATATTGCCCTAGTTGATTTTACTGTTGTC--AAGTTGTCATCCTTAGTT 510
****** **** * ** * *** ************** * ********* * ** ***
consensus_475#0 TCCAATAAACTGTCCCTACTTCAGAGTAGCAGTCATGCTACCTA--------------TC 1225
consensus_475#1 GCCAATACAGTGTCTCTACTTCAGAGTAGCAGTTAGGATGCTTACAGAGACAGGCAATTC 570
****** * **** ****************** * * * * ** **
consensus_475#0 TTGTTTATCTTGGTTTACAGA--GGCAGGCAAGCTGGC--------AATTTATAGTACCA 1275
consensus_475#1 AGACTAGTAACAGTCCATGAATCATCAGATATGTTTCTTCGAAACAAAGTTTTACAAGGA 630
* * ** * * *** * * * ** ** ** * *
consensus_475#0 GTCCATGAATGG----TCAGAT--------------------------- 1293
consensus_475#1 GTACATGAATGAACATTCAGACATATTTCCCCCCCAAAAAAAAAAAAAA 679
** ******** *****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||