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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4755#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 806 fasta sequence
[CTCGTATTCGCGTCGTCGCCCTTTCTCCTCTCTTCTCCTCTCCTCCCCCGTCTCCGCCGCTCGCGATCCCCACCGCCGCCGG-GACGCGCGCGCGGGNTTCGCCGGGNCGTTGTGTCCGCGCCGCCCCGANGAGCCGGCTCGTCGACGGAGACGGTGCGGCTGTTCCTCCGTACTCGTCGCCCGCCACCTCATCCCGNGGCGNCGTCTCCNTCGATCCCCTCGNCAAAGCGCGCAAGGAAGGAAGGCTCTCCCCCGCCACCGACGCCGTCCGTCCAGATCTAAGGTTTTGACACAATGGGGTTATTCAAGGGCAGCTTCACATTCATGGTGGGAATGGGATGTGGTGTCTATGTAGCTCAGAACTACAATGTTCCAAACATCAAGAAGCTTTTCAACACATATGTTTTCATGGCAAAGCACATCGAGGAAACGTATCGGAAGCCAAAGAAAGATGATGACTGATGATTTACACAGATTTTCATTTTGGTGCCCCTGGAAATCAACGTGTAACTAACATGATACAGAAATATGATGTTCATGAATGGGGAAGTCGGTAAAGTCGGTTCTGATCGTCGGCAATTGAACTATGGTGGCTTAAATGCTTTACCGGTGAACCACTGTTTACTACTTTACTATACTGCTTTTAGGGGGGTTGTTAGAGAGACAGAAGTTGCTGTCCAGATGACAATGACTCCCTTTTATCTTTTGTCGGTGCTACGAAAATGCACTTGACCTTTTTTTGGCTGTTGAAATGTGTAGGACTGGAAATCCACCACTATTATCATGTCCATCTGTATATGTCATGC]
[+] EMBL AU063135 [CTCGTATTCGCGTCGTCGCCCTTTCTCCTCTCTTCTCCTCTCCTCCCCCGTCTCCGCCGCTCGCGATCCCCACCGCCGCCGG GACGCGCGCGCGGGNTTCGCCGGGNCGTTGTGTCCGCGCCGCCCCGANGAGCCGGCTCGTCGACGGAGACGGTGCGGCTGTTCCTCCGTACTCGTCGCCCGCCACCTCATCCCGNGGCGNCGTCTCCNTCGATCCCCTCGNCAAAGCGCGCAAGGAAGGAAGG ]
[+] EMBL AK070586 [ CTCTCTTCTCCTCTCCTCCCCCGTCTCCGCCGCTCGCGATCCCCACCGCCGCCGGCGACGCGCGCGCGGCGGTCGCCGGG CGTTGTGTCCGCGCCGCCCCGACGAGCCGGCTCGTCGACGGAGACGGTGCGGCTGTTCCTCCGTACTCGTCGCCCGCCACCTCATCCCGCGGCGCCGTCTCCCTCGATCCCCTCGCCAAAGCGCGCAAGGAAGGAAGGCTCTCCCCCGCCACCGACGCCGTCCGTCCAGATCTAAGGTTTTGACACAATGGGGTTATTCAAGGGCAGCTTCACATTCATGGTGGGAATGGGATGTGGTGTCTATGTAGCTCAGAACTACAATGTTCCAAACATCAAGAAGCTTTTCAACACATATGTTTTCATGGCAAAGCACATCGAGGAAACGTATCGGAAGCCAAAGAAAGATGATGACTGATGATTTACACAGATTTTCATTTTGGTGCCCCTGGAAATCAACGTGTAACTAACATGATACAGAAATATGATGTTCATGAATGGGGAAGTCGGTAAAGTCGGTTCTGATCGTCGGCAATTGAACTATGGTGGCTTAAATGCTTTACCGGTGAACCACTGTTTACTACTTTACTATACTGCTTTTAGGGGGGTTGTTAGAGAGACAGAAGTTGCTGTCCAGATGACAATGACTCCCTTTTATCTTTTGTCGGTGCTACGAAAATGCACTTGACCTTTTTTTGGCTGTTGAAATGTGTAGGACTGGAAATCCACCACTATTATCATGTCCATCTGTATATGTCATGC]
consensusID : consensus_4755#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence
[TGGGAATGGGATGTGGTGTNTATGTAGCTCAGAACTACAATGTTCCAAACATCAAGAAGCTTTTCAACACATATGTTTTCATGGCAAAGCACATCGNGGAAACGTNTCGGAAGCCAAAGAAAGATGATGACTGATGATTTCCACAGATTTTCATTTTGGTGCCCCTGGAAATCAACGTGTAACTAACATGATACAGAAATATGATGTTCATGAATGGGGAAGTCGGTAAAGTCGGTTCTGATCGTCGGCAATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU085783 [TGGGAATGGGATGTGGTGTNTATGTAGCTCAGAACTACAATGTTCCAAACATCAAGAAGCTTTTCAACACATATGTTTTCATGGCAAAGCACATCGNGGAAACGTNTCGGAAGCCAAAGAAAGATGATGACTGATGATTTCCACAGATTTTCATTTTGGTGCCCCTGGAAATCAACGTGTAACTAACATGATACAGAAATATGATGTTCATGAATGGGGAAGTCGGTAAAGTCGGTTCTGATCGTCGGCAATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4755#0 CTCGTATTCGCGTCGTCGCCCTTTCTCCTCTCTTCTCCTCTCCTCCCCCGTCTCCGCCGC 60
consensus_4755#1 ------------------------------------------------------------
consensus_4755#0 TCGCGATCCCCACCGCCGCCGGGACGCGCGCGCGGGNTTCGCCGGGNCGTTGTGTCCGCG 120
consensus_4755#1 ------------------------------------------------------------
consensus_4755#0 CCGCCCCGANGAGCCGGCTCGTCGACGGAGACGGTGCGGCTGTTCCTCCGTACTCGTCGC 180
consensus_4755#1 ------------------------------------------------------------
consensus_4755#0 CCGCCACCTCATCCCGNGGCGNCGTCTCCNTCGATCCCCTCGNCAAAGCGCGCAAGGAAG 240
consensus_4755#1 ------------------------------------------------------------
consensus_4755#0 GAAGGCTCTCCCCCGCCACCGACGCCGTCCGTCCAGATCTAAGGTTTTGACACAATGGGG 300
consensus_4755#1 ------------------------------------------------------------
consensus_4755#0 TTATTCAAGGGCAGCTTCACATTCATGGTGGGAATGGGATGTGGTGTCTATGTAGCTCAG 360
consensus_4755#1 ----------------------------TGGGAATGGGATGTGGTGTNTATGTAGCTCAG 32
******************* ************
consensus_4755#0 AACTACAATGTTCCAAACATCAAGAAGCTTTTCAACACATATGTTTTCATGGCAAAGCAC 420
consensus_4755#1 AACTACAATGTTCCAAACATCAAGAAGCTTTTCAACACATATGTTTTCATGGCAAAGCAC 92
************************************************************
consensus_4755#0 ATCGAGGAAACGTATCGGAAGCCAAAGAAAGATGATGACTGATGATTTACACAGATTTTC 480
consensus_4755#1 ATCGNGGAAACGTNTCGGAAGCCAAAGAAAGATGATGACTGATGATTTCCACAGATTTTC 152
**** ******** ********************************** ***********
consensus_4755#0 ATTTTGGTGCCCCTGGAAATCAACGTGTAACTAACATGATACAGAAATATGATGTTCATG 540
consensus_4755#1 ATTTTGGTGCCCCTGGAAATCAACGTGTAACTAACATGATACAGAAATATGATGTTCATG 212
************************************************************
consensus_4755#0 AATGGGGAAGTCGGTAAAGTCGGTTCTGATCGTCGGCAATTGAACTATGGTGGCTTAAAT 600
consensus_4755#1 AATGGGGAAGTCGGTAAAGTCGGTTCTGATCGTCGGCAATTGAAAAAAAAAAAAAAAAAA 272
******************************************** * ***
consensus_4755#0 GCTTTACCGGTGAACCACTGTTTACTACTTTACTATACTGCTTTTAGGGGGGTTGTTAGA 660
consensus_4755#1 AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 293
* ** *
consensus_4755#0 GAGACAGAAGTTGCTGTCCAGATGACAATGACTCCCTTTTATCTTTTGTCGGTGCTACGA 720
consensus_4755#1 ------------------------------------------------------------
consensus_4755#0 AAATGCACTTGACCTTTTTTTGGCTGTTGAAATGTGTAGGACTGGAAATCCACCACTATT 780
consensus_4755#1 ------------------------------------------------------------
consensus_4755#0 ATCATGTCCATCTGTATATGTCATGC 806
consensus_4755#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||