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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4759#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1967 fasta sequence
[GAGCTGAAGAGCCGGCTCGTTCCTCTCCTTCCCGTTCACATTTCAAAACCTCAAAGCCCCCACAAACTTCGGAATCGAGGTGAGCGGGAGTTCGGAGAGATCAACCCGAGGGCCGCCGGCCGATGGCGATAGATCAGCCCATCAAAAAGAGAGGGAGACCACCAGGTTCCAAGAACACGAAGAACAAGATGGAGCAGAAGATGGAACTAGTCCATCAAAGGCTCGCCTTACTTGACAGCAGCAGTGGCAGCGACAGGGATGACGATATTGGGCCGAGGGCTATAATAATTGATTGTGATGAAGATGATACGGATGACGTGATGGAGGTTGTTCCTTTGAAAATGCTGATGCCAAAGGAGGTGGAAAATGAGCAAAGAACGGTTCCTGGCATTCCTCAAACATGCAATACCCAGAACACTAGCAATGGACGCACTAACACCACTGAAGTGCCAGTTAAGGGCCAAAATAAATGTGCAAGTTATCTTCCAAAAAAATCTAGTGTTCAGGCGTTCTGTGGATCTGCTATGAAGAGAGCTCAAGAGATTCAAACGAAGTTACCAGCAGAGCATCCTAGCTTTGTTAAACATATGTTACATTCACATGTTGTCAGCGGATTTTGGCTGGGTCTACCAGCTGGCTTCTGCAACAAGTATCTCCCAAAGCATGACACTGACATTGTGCTCGAAGATGAGAATGGGAACAACCATAACACAAATTACCTGGGTGGTAAGCAGGGACTCAGTGCTGGATGGAGAGGTTTTGCGATTAACCATGATATCAAGGTTGGCGATGTTGTGGTCTTTGAGCTTGTGAGCACAACAAAATTCAAGGTGCATATAATTAGAGATAAAAACATCAGCCCAACTGACAGAGCACCCGGTCTCAAGAGTTTTTACGCCTGCAAGAAACGGAAGATATCTAAAGAAGCTACTGATAATGCCACCAAGCCTAAGGAGGATCCAGAGACTACTAGAGTCAGTAGCAAAGTGGCTCATGATGATACCCAGAATCTAGTTCATGAAGCAATAGACGGCATCAGGTTTTCAGACTCAGAGATGAGCTTTGACGACGTGATG-AGCTACAGTAACTTCAACATCGTCGTGGACGGCTTGGTCATTGACTGCAAGTTCCCCGATCACCAGCGCAGGACGTACTATGAGCTGTGCTGCGCCCAGAAGTCGTTCCTCCACAGGCATCTGCTGAGGCAGCTGAGCCTCACGCTCGTCGTGGGGGTGATCATGGAGACGATCAACATCGCTGAGGGCATCAGGGCCTGCGGGGCGGGTACCTCCTCGCAAGAGGACTTCCTGATCTGGAAGAAGACGCTGCAGTCATTCGACCTGCTGGGAATGAATGTTGCGTTCTTGCTCAAGCGCGTTGACGATATTCTCGGCCTCCCCGAGCAACCGAGGGATCCATCGGAGTGTAGCAAGTACAATGAGCTGAAGCTTGAGCGGTCTCGTGCTGGGGAGAAGGTGGAGGCTCTGGAGTCCATGATGTTGACAGTGAAGGATGTGCTGAAGAAGATCGATGCCGAGATGGAGGAGATGGAGTCGAGCGTGAGGAACCATGACATTGCGCTGCGGAAGATCGCCACTGCGCCATGGTGATCCTGCTTGACATCTGGGGTACTTGTCTGAAACATTTTGGGTTCGTCATTCAGGGTTTCAGATGATGATGATGATGATGATGCACTGGGAAACCTTCGTGGTGAGTGACTGAGTGGTGAATCCTGCTAAACTCAAGGACTGACCACATTTTTGTGTACATTTCTTCAGTTACTACCACGCAGCTCAGTGCCTATCTAGAACTGTTCAGCAGCAAACCTGTCTAGGAATCAGGATGCTGTTTTTACACGGTAAATCGTATAACAGAAGTTGTAAATTTTGGGGGGCGAATGCGCTGTAAGCAGTGCAGGAAATGCGAGGAAGAAATGCAGAACACTACTTAATTATTTCAGACTCCGT]
[+] EMBL AK106332 [GAGCTGAAGAGCCGGCTCGTTCCTCTCCTTCCCGTTCACATTTCAAAACCTCAAAGCCCCCACAAACTTCGGAATCGAGGTGAGCGGGAGTTCGGAGAGATCAACCCGAGGGCCGCCGGCCGATGGCGATAGATCAGCCCATCAAAAAGAGAGGGAGACCACCAGGTTCCAAGAACACGAAGAACAAGATGGAGCAGAAGATGGAACTAGTCCATCAAAGGCTCGCCTTACTTGACAGCAGCAGTGGCAGCGACAGGGATGACGATATTGGGCCGAGGGCTATAATAATTGATTGTGATGAAGATGATACGGATGACGTGATGGAGGTTGTTCCTTTGAAAATGCTGATGCCAAAGGAGGTGGAAAATGAGCAAAGAACGGTTCCTGGCATTCCTCAAACATGCAATACCCAGAACACTAGCAATGGACGCACTAACACCACTGAAGTGCCAGTTAAGGGCCAAAATAAATGTGCAAGTTATCTTCCAAAAAAATCTAGTGTTCAGGCGTTCTGTGGATCTGCTATGAAGAGAGCTCAAGAGATTCAAACGAAGTTACCAGCAGAGCATCCTAGCTTTGTTAAACATATGTTACATTCACATGTTGTCAGCGGATTTTGGCTGGGTCTACCAGCTGGCTTCTGCAACAAGTATCTCCCAAAGCATGACACTGACATTGTGCTCGAAGATGAGAATGGGAACAACCATAACACAAATTACCTGGGTGGTAAGCAGGGACTCAGTGCTGGATGGAGAGGTTTTGCGATTAACCATGATATCAAGGTTGGCGATGTTGTGGTCTTTGAGCTTGTGAGCACAACAAAATTCAAGGTGCATATAATTAGAGATAAAAACATCAGCCCAACTGACAGAGCACCCGGTCTCAAGAGTTTTTACGCCTGCAAGAAACGGAAGATATCTAAAGAAGCTACTGATAATGCCACCAAGCCTAAGGAGGATCCAGAGACTACTAGAGTCAGTAGCAAAGTGGCTCATGATGATACCCAGAATCTAGTTCATGAAGCAATAGACGGCATCAGGTTTTCAGACTCAGAGATGAGCTTTGACGACGTGATG AGCTACAGTAACTTCAACATCGTCGTGGACGGCTTGGTCATTGACTGCAAGTTCCCCGATCACCAGCGCAGGACGTACTATGAGCTGTGCTGCGCCCAGAAGTCGTTCCTCCACAGGCATCTGCTGAGGCAGCTGAGCCTCACGCTCGTCGTGGGGGTGATCATGGAGACGATCAACATCGCTGAGGGCATCAGGGCCTGCGGGGCGGGTACCTCCTCGCAAGAGGACTTCCTGATCTGGAAGAAGACGCTGCAGTCATTCGACCTGCTGGGAATGAATGTTGCGTTCTTGCTCAAGCGCGTTGACGATATTCTCGGCCTCCCCGAGCAACCGAGGGATCCATCGGAGTGTAGCAAGTACAATGAGCTGAAGCTTGAGCGGTCTCGTGCTGGGGAGAAGGTGGAGGCTCTGGAGTCCATGATGTTGACAGTGAAGGATGTGCTGAAGAAGATCGATGCCGAGATGGAGGAGATGGAGTCGAGCGTGAGGAACCATGACATTGCGCTGCGGAAGATCGCCACTGCGCCATGGTGATCCTGCTTGACATCTGGGGTACTTGTCTGAAACATTTTGGGTTCGTCATTCAGGGTTTCAGATGATGATGATGATGATGATGCACTGGGAAACCTTCGTGGTGAGTGACTGAGTGGTGAATCCTGCTAAACTCAAGGACTGACCACATTTTTGTGTACATTTCTTCAGTTACTACCACGCAGCTCAGTGCCTATCTAGAACTGTTCAGCAGCAAACCTGTCTAGGAATCAGGATGCTGTTTTTACACGGTAAATCGTATAACAGAAGTTGTAAATTTTGGGGGGCGAATGCGCTGTAAGCAGTGCAGGAAATGCGAGGAAGAAATGCAGAACACTACTTAATTATTTCAGACTCCGT]
[+] EMBL AA749981 [ TAGACGGCATCAGGTTTT AGACTCAGAGATGAGCTTTGACGACGTGATGAAGCTGCAGTAACTTCAACATCGTCGTGGACGGCAAGGTCATTGACTGCAAGTTCCCCGATCACCAGCGCAGGACGTACTATGAGCTGTGCTGC CCCAGAAGTCGTTCCTCCACAGGCATCTGCTGAGGCAGCTGAGCCTCACGCTCGTCGTGGGGGTGATCACGGAGACG TCAA ]
consensusID : consensus_4759#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence
[GACGAACTTCTTGCTTCAATCAAGGATGCAGAAGGACTCCTCCATTTGAAACGCTCCATGCTACATAAATAAACAAGGTCATTGACTGCAAGTTCCCCGATCACCAGCGCAGGGCGTACTATGAGCTGTGTGCCCCCGGGTCTTCCTCCACAGGCAATCTGCTGAGGCGCTGAGCCTACGTCGTCGTGGGGGTGATCATGGAGACGATCAACATCGCTGAGGGC]
[+] EMBL AA749980 [GACGAACTTCTTGCTTCAATCAAGGATGCAGAAGGACTCCTCCATTTGAAACGCTCCATGCTACATAAATAAACAAGGTCATTGACTGCAAGTTCCCCGATCACCAGCGCAGGGCGTACTATGAGCTGTGTGCCCCCGGGTCTTCCTCCACAGGCAATCTGCTGAGGCGCTGAGCCTACGTCGTCGTGGGGGTGATCATGGAGACGATCAACATCGCTGAGGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4759#0 GAGCTGAAGAGCCGGCTCGTTCCTCTCCTTCCCGTTCACATTTCAAAACCTCAAAGCCCC 60
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 CACAAACTTCGGAATCGAGGTGAGCGGGAGTTCGGAGAGATCAACCCGAGGGCCGCCGGC 120
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 CGATGGCGATAGATCAGCCCATCAAAAAGAGAGGGAGACCACCAGGTTCCAAGAACACGA 180
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 AGAACAAGATGGAGCAGAAGATGGAACTAGTCCATCAAAGGCTCGCCTTACTTGACAGCA 240
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 GCAGTGGCAGCGACAGGGATGACGATATTGGGCCGAGGGCTATAATAATTGATTGTGATG 300
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 AAGATGATACGGATGACGTGATGGAGGTTGTTCCTTTGAAAATGCTGATGCCAAAGGAGG 360
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 TGGAAAATGAGCAAAGAACGGTTCCTGGCATTCCTCAAACATGCAATACCCAGAACACTA 420
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 GCAATGGACGCACTAACACCACTGAAGTGCCAGTTAAGGGCCAAAATAAATGTGCAAGTT 480
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 ATCTTCCAAAAAAATCTAGTGTTCAGGCGTTCTGTGGATCTGCTATGAAGAGAGCTCAAG 540
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 AGATTCAAACGAAGTTACCAGCAGAGCATCCTAGCTTTGTTAAACATATGTTACATTCAC 600
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 ATGTTGTCAGCGGATTTTGGCTGGGTCTACCAGCTGGCTTCTGCAACAAGTATCTCCCAA 660
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 AGCATGACACTGACATTGTGCTCGAAGATGAGAATGGGAACAACCATAACACAAATTACC 720
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 TGGGTGGTAAGCAGGGACTCAGTGCTGGATGGAGAGGTTTTGCGATTAACCATGATATCA 780
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 AGGTTGGCGATGTTGTGGTCTTTGAGCTTGTGAGCACAACAAAATTCAAGGTGCATATAA 840
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 TTAGAGATAAAAACATCAGCCCAACTGACAGAGCACCCGGTCTCAAGAGTTTTTACGCCT 900
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 GCAAGAAACGGAAGATATCTAAAGAAGCTACTGATAATGCCACCAAGCCTAAGGAGGATC 960
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 CAGAGACTACTAGAGTCAGTAGCAAAGTGGCTCATGATGATACCCAGAATCTAGTTCATG 1020
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 AAGCAATAGACGGCATCAGGTTTTCAGACTCAGAGATGAGCTTTGACGACGTGATGAGCT 1080
consensus_4759#1 --------GACGAACTTCTTGCTTCAA--TCAAGGATGCAGAAGGACTCCTCCATTTGAA 50
**** * **** *** **** *** * ** *
consensus_4759#0 ACAGTAACTTCAACATCGTCGTGGACGGCTTGGTCATTGACTGCAAGTTCCCCGATCACC 1140
consensus_4759#1 ACGCTCCATGCTACATAA--ATAAACAA---GGTCATTGACTGCAAGTTCCCCGATCACC 105
** * * * **** * ** *****************************
consensus_4759#0 AGCGCAGGACGTACTATGAGCTGTGCTGCGCCCAGAAGTCGTTCCTCCACAGGCA-TCTG 1199
consensus_4759#1 AGCGCAGGGCGTACTATGAGCTGTG-TGCCCCCGG--GTC-TTCCTCCACAGGCAATCTG 161
******** **************** *** *** * *** ************** ****
consensus_4759#0 CTGAGGCAGCTGAGCCTCACGCTCGTCGTGGGGGTGATCATGGAGACGATCAACATCGCT 1259
consensus_4759#1 CTGAGGC-GCTGAGCCT-ACG-TCGTCGTGGGGGTGATCATGGAGACGATCAACATCGCT 218
******* ********* *** **************************************
consensus_4759#0 GAGGGCATCAGGGCCTGCGGGGCGGGTACCTCCTCGCAAGAGGACTTCCTGATCTGGAAG 1319
consensus_4759#1 GAGGGC------------------------------------------------------ 224
******
consensus_4759#0 AAGACGCTGCAGTCATTCGACCTGCTGGGAATGAATGTTGCGTTCTTGCTCAAGCGCGTT 1379
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 GACGATATTCTCGGCCTCCCCGAGCAACCGAGGGATCCATCGGAGTGTAGCAAGTACAAT 1439
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 GAGCTGAAGCTTGAGCGGTCTCGTGCTGGGGAGAAGGTGGAGGCTCTGGAGTCCATGATG 1499
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 TTGACAGTGAAGGATGTGCTGAAGAAGATCGATGCCGAGATGGAGGAGATGGAGTCGAGC 1559
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 GTGAGGAACCATGACATTGCGCTGCGGAAGATCGCCACTGCGCCATGGTGATCCTGCTTG 1619
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 ACATCTGGGGTACTTGTCTGAAACATTTTGGGTTCGTCATTCAGGGTTTCAGATGATGAT 1679
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 GATGATGATGATGCACTGGGAAACCTTCGTGGTGAGTGACTGAGTGGTGAATCCTGCTAA 1739
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 ACTCAAGGACTGACCACATTTTTGTGTACATTTCTTCAGTTACTACCACGCAGCTCAGTG 1799
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 CCTATCTAGAACTGTTCAGCAGCAAACCTGTCTAGGAATCAGGATGCTGTTTTTACACGG 1859
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 TAAATCGTATAACAGAAGTTGTAAATTTTGGGGGGCGAATGCGCTGTAAGCAGTGCAGGA 1919
consensus_4759#1 ------------------------------------------------------------
consensus_4759#0 AATGCGAGGAAGAAATGCAGAACACTACTTAATTATTTCAGACTCCGT 1967
consensus_4759#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||