cluster # 4761

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Oryza sativa
cluster # 4761 cluster # 4761 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4761#0 length = 561 sequences # 2

consensus_4761#1 length = 337 sequences # 1

consensusID : consensus_4761#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 561
fasta sequence

                              [CGCCCGGGGGGGTCGTGGCAGGTTTTCCTCGACATCCTCCGAACCGACGGGCCCCTGGGGCTCTACCGCGGCCTCTCCGCCGTNATCCTCGGCTCCGCGTCCTCCTCCGCCGTCTACTTCGGCACGTGCNAGCTCGCCAAGTCGCTGCTCCGCCCCCACCTCCCACCCTTCCTCGTGCCGCCGCTCGCCGGCGCCACGGCAACGTCTCCTCCTCCGCCATCATGGTCCCCAAGGAGCTCATCACCCAGCGCCTCCAATCCGGCGCCGCCAAGGGCCGCTCATGGCAGGTGCTCCTTCAGATCCTCCAGACCGACGGATTCTTCGGCCTCTACGCCGGCTACGCGCCACCCTCCTCCGCAACCTCCCCGCGGGGGTCCTCAGCTACTCCTCCTTCGAGTACCTCAAGGCATTCACCCTCAAGCAACGCAACAAGGAGAGCCTCACGCCGGGAGAGAGTNTGCTGTGCGGCGCTCTCGCGGGGGCCATATCGGCGGGCGCTCAACANCCCGTTCGACGTCGTCAAGAGGNGCTTNATGACAGGGTNGGCACGAGGGGAGCCGN]

[+] EMBL C26285               [CGCCCGGGGGGGTCGTGGCAGGTTTTCCTCGACATCCTCCGAACCGACGGGCCCCTGGGGCTCTACCGCGGCCTCTCCGCCGTNATCCTCGGCTCCGCGTCCTCCTCCGCCGTCTACTTCGGCACGTGCNAGCTCGCCAAGTCGCTGCTCCGCCCCCACCTCCCACCCTTCCTCGTGCCGCCGCTCGCCGGCGCCACGGCAACGTCTCCTCCTCCGCCATCATGGTCCCCAAGGAGCTCATCACCCAGCGCCTCCAATCCGGCGCCGCCAAGGGCCGCTCATGGCAGGTGCTCCTTCAGATCCTCCAGACCGACGGATTC                                                                                                                                                                                                                                                 ]
[+] EMBL OSC24392             [                                                                                                                                                                                                                                      AAGGAGCTCATCACCCAGCGCCTCCAATCCGGCGCCGCCAAGGGCCGCTCATGGCAGGTGCTCCTTCAGATCCTCCAGACCGACGGATTCTTCGGCCTCTACGCCGGCTACGCGCCACCCTCCTCCGCAACCTCCCCGCGGGGGTCCTCAGCTACTCCTCCTTCGAGTACCTCAAGGCATTCACCCTCAAGCAACGCAACAAGGAGAGCCTCACGCCGGGAGAGAGTNTGCTGTGCGGCGCTCTCGCGGGGGCCATATCGGCGGGCGCTCAACANCCCGTTCGACGTCGTCAAGAGGNGCTTNATGACAGGGTNGGCACGAGGGGAGCCGN]




>consensus_4761#0
CGCCCGGGGGGGTCGTGGCAGGTTTTCCTCGACATCCTCCGAACCGACGGGCCCCTGGGG
CTCTACCGCGGCCTCTCCGCCGTNATCCTCGGCTCCGCGTCCTCCTCCGCCGTCTACTTC
GGCACGTGCNAGCTCGCCAAGTCGCTGCTCCGCCCCCACCTCCCACCCTTCCTCGTGCCG
CCGCTCGCCGGCGCCACGGCAACGTCTCCTCCTCCGCCATCATGGTCCCCAAGGAGCTCA
TCACCCAGCGCCTCCAATCCGGCGCCGCCAAGGGCCGCTCATGGCAGGTGCTCCTTCAGA
TCCTCCAGACCGACGGATTCTTCGGCCTCTACGCCGGCTACGCGCCACCCTCCTCCGCAA
CCTCCCCGCGGGGGTCCTCAGCTACTCCTCCTTCGAGTACCTCAAGGCATTCACCCTCAA
GCAACGCAACAAGGAGAGCCTCACGCCGGGAGAGAGTNTGCTGTGCGGCGCTCTCGCGGG
GGCCATATCGGCGGGCGCTCAACANCCCGTTCGACGTCGTCAAGAGGNGCTTNATGACAG
GGTNGGCACGAGGGGAGCCGN

consensusID : consensus_4761#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [NGTCCTGANTGAGTCCCCAACGGAGCGTCATCACCCAACTGCCTCCAANTCCAGGCGCCGCCAAGGGCCGCTCATGGCAGGGTGCTCCATTCAGATCCTCCAGACCGACCGGATTCTTCNGGCCTCTACGCCGGCTACGCCGCCACCCTCCTCCGCAACCTCCCCGNGGGGGTCCTCAGCTACTNCTCCTTCGAGTACCTCAAGGCATTNACCCTCAAGCAACGCAACAAGGGAGAGCCTCACGCCGTGGAGAGANTNTGCCTGTTGCGNGCGCTCTNCGCGGGGGGGCCAATATTCGGGCGGGCGCTCAACCANCCCCCCGNTTCGAACGGTCGGT]

[+] EMBL OSC27171             [NGTCCTGANTGAGTCCCCAACGGAGCGTCATCACCCAACTGCCTCCAANTCCAGGCGCCGCCAAGGGCCGCTCATGGCAGGGTGCTCCATTCAGATCCTCCAGACCGACCGGATTCTTCNGGCCTCTACGCCGGCTACGCCGCCACCCTCCTCCGCAACCTCCCCGNGGGGGTCCTCAGCTACTNCTCCTTCGAGTACCTCAAGGCATTNACCCTCAAGCAACGCAACAAGGGAGAGCCTCACGCCGTGGAGAGANTNTGCCTGTTGCGNGCGCTCTNCGCGGGGGGGCCAATATTCGGGCGGGCGCTCAACCANCCCCCCGNTTCGAACGGTCGGT]




>consensus_4761#1
NGTCCTGANTGAGTCCCCAACGGAGCGTCATCACCCAACTGCCTCCAANTCCAGGCGCCG
CCAAGGGCCGCTCATGGCAGGGTGCTCCATTCAGATCCTCCAGACCGACCGGATTCTTCN
GGCCTCTACGCCGGCTACGCCGCCACCCTCCTCCGCAACCTCCCCGNGGGGGTCCTCAGC
TACTNCTCCTTCGAGTACCTCAAGGCATTNACCCTCAAGCAACGCAACAAGGGAGAGCCT
CACGCCGTGGAGAGANTNTGCCTGTTGCGNGCGCTCTNCGCGGGGGGGCCAATATTCGGG
CGGGCGCTCAACCANCCCCCCGNTTCGAACGGTCGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4761#0      CGCCCGGGGGGGTCGTGGCAGGTTTTCCTCGACATCCTCCGAACCGACGGGCCCCTGGGG 60
consensus_4761#1      ------------------------------------------------------------
                                                                                  

consensus_4761#0      CTCTACCGCGGCCTCTCCGCCGTNATCCTCGGCTCCGCGTCCTCCTCCGCCGTCTACTTC 120
consensus_4761#1      ------------------------------------------------------------
                                                                                  

consensus_4761#0      GGCACGTGCNAGCTCGCCAAGTCGCTGCTCCGCCCCCACCTCCCACCCTTCCTCGTGCCG 180
consensus_4761#1      ------------------------------------------------------------
                                                                                  

consensus_4761#0      CCGCTCGCCGGCGCCACGGCAACGTCTCCTCCTCCGCCATCATGGTCCCCAAGGAGC-TC 239
consensus_4761#1      -------------------------------NGTCCTGANTGAGTCCCCAACGGAGCGTC 29
                                                        *   *    *  *** * ***** **

consensus_4761#0      ATCACCCAGC-GCCTCCAATCC--GGCGCCGCCAAGGGCCGCTCATGGCAGG-TGCTCC- 294
consensus_4761#1      ATCACCCAACTGCCTCCAANTCCAGGCGCCGCCAAGGGCCGCTCATGGCAGGGTGCTCCA 89
                      ******** * ********  *  **************************** ****** 

consensus_4761#0      TTCAGATCCTCCAGACCGAC-GGATTCTTCGG-CCTCTACGCCGGCTACGC-GCCACCCT 351
consensus_4761#1      TTCAGATCCTCCAGACCGACCGGATTCTTCNGGCCTCTACGCCGGCTACGCCGCCACCCT 149
                      ******************** ********* * ****************** ********

consensus_4761#0      CCTCCGCAACCTCCCCGCGGGGGTCCTCAGCTACTCCTCCTTCGAGTACCTCAAGGCATT 411
consensus_4761#1      CCTCCGCAACCTCCCCGNGGGGGTCCTCAGCTACTNCTCCTTCGAGTACCTCAAGGCATT 209
                      ***************** ***************** ************************

consensus_4761#0      CACCCTCAAGCAACGCAACAAGG-AGAGCCTCACGCCG-GGAGAGAGTNTGCT------G 463
consensus_4761#1      NACCCTCAAGCAACGCAACAAGGGAGAGCCTCACGCCGTGGAGAGANTNTGCCTGTTGCG 269
                       ********************** ************** ******* *****       *

consensus_4761#0      TGCGGCGCTCTCGCGGGGGCCA-TATC--GGCGGGCGCTCAACANCCCGTTCGACGTCGT 520
consensus_4761#1      NGCGCTCTNCGCGGGGGGGCCAATATTCGGGCGGGCGCTCAACCANCCCCCCGNTTCGAA 329
                       ***     * ** ******** ***   **************   **   **       

consensus_4761#0      CAAGAGGNGCTTNATGACAGGGTNGGCACGAGGGGAGCCGN 561
consensus_4761#1      CGGTCGGT--------------------------------- 337
                      *    **