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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1060 fasta sequence
[CTACAACGTGCTTGGTGGAAAATTGAACCGTGGCTTGGCTGTTGTTGAGAGCTACAAAATACTGAAAGCTGCTAGCGCAACAGAACCGAGCGAGGAGGAATTGTTTCTTGCATGCATCCTTGGTTGGGGCATCGAATGGCTTCAGGCCTATTTTCTGGTTCTTGATGATATAATGGATAACTCACAAACTCGACGAGGAAAACCCTGTTGGTTTAGGCTTCCCAAGGTCGGCCTCATAGCTATAAATGATGGACTCGTCCTTCGCAGCAAAATTTCAAGGATCTTTAGGCGCTATTTTCGTGGAAAAAGTTACTATGTTGATCTCCTAGATTTATTCAATGAGGTTGAAATTCAGACAACTTCAGGCCAGTTATTAGATCAAATTACAACAAATGAAGGAAGGAAAGATCTGAACAAGTATAATGTACATGTATATAGGCGCATTGTGGAATATAAGACAGCTTACTATTCATTTTATTTGCCGGTTGCATGCGCACTGCTGTTGTTTGGTGAGAGTTTGGACAATTATGCTCAAGTGAAGCATATCCTAGTTGAGATGGGTGTTTACTTTCAAAGCCAGGATGATTATCTGGACTGTTTTGGTGAACCAGAAATTATTGGCAAGATAGGAAGTGACATTGAAGATTTCAAGTGTTCTTGGCTATTTGTTCAAGCACTTGAGCGCGCTGATGAGAAACAAAAAGGAGTCTTGTTTGAAAATTATGGGAAATCAGATCCAGCTTGTGTTGCCAAAGTGAAGGATCTATATAACGAACTTCATCTCCAGCGGGTGTTTTCTGAGTATGAAAGGGAGAGCTATGAAAAGCTGATCTCAGCCATCGAAGCACAACCGAATGAAGCAGTACGAGCGGTTCTGAAATCTTTTCTGCACAAGATCTACAAGAGGAGCAAGTAGAACACGGCTGAAAAATAAGGCCAATTTTGGCATCTCGTGGATTATTCTGGTTCTTGGCTTCTTGTTGGGATGTATAGCATAGGTGTGATAGGTTTCTAACTTCTGGGACTTTGCAACGAGGAACGTGCCTGATAAATAAGAAAA]
[+] EMBL AK099451 [CTACAACGTGCTTGGTGGAAAATTGAACCGTGGCTTGGCTGTTGTTGAGAGCTACAAAATACTGAAAGCTGCTAGCGCAACAGAACCGAGCGAGGAGGAATTGTTTCTTGCATGCATCCTTGGTTGGGGCATCGAATGGCTTCAGGCCTATTTTCTGGTTCTTGATGATATAATGGATAACTCACAAACTCGACGAGGAAAACCCTGTTGGTTTAGGCTTCCCAAGGTCGGCCTCATAGCTATAAATGATGGACTCGTCCTTCGCAGCAAAATTTCAAGGATCTTTAGGCGCTATTTTCGTGGAAAAAGTTACTATGTTGATCTCCTAGATTTATTCAATGAGGTTGAAATTCAGACAACTTCAGGCCAGTTATTAGATCAAATTACAACAAATGAAGGAAGGAAAGATCTGAACAAGTATAATGTACATGTATATAGGCGCATTGTGGAATATAAGACAGCTTACTATTCATTTTATTTGCCGGTTGCATGCGCACTGCTGTTGTTTGGTGAGAGTTTGGACAATTATGCTCAAGTGAAGCATATCCTAGTTGAGATGGGTGTTTACTTTCAAAGCCAGGATGATTATCTGGACTGTTTTGGTGAACCAGAAATTATTGGCAAGATAGGAAGTGACATTGAAGATTTCAAGTGTTCTTGGCTATTTGTTCAAGCACTTGAGCGCGCTGATGAGAAACAAAAAGGAGTCTTGTTTGAAAATTATGGGAAATCAGATCCAGCTTGTGTTGCCAAAGTGAAGGATCTATATAACGAACTTCATCTCCAGCGGGTGTTTTCTGAGTATGAAAGGGAGAGCTATGAAAAGCTGATCTCAGCCATCGAAGCACAACCGAATGAAGCAGTACGAGCGGTTCTGAAATCTTTTCTGCACAAGATCTACAAGAGGAGCAAGTAGAACACGGCTGAAAAATAAGGCCAATTTTGGCATCTCGTGGATTATTCTGGTTCTTGGCTTCTTGTTGGGATGTATAGCATAGGTGTGATAGGTTTCTAACTTCTGGGACTTTGCAACGAGGAACGTGCCTGATAAATAAGAAAA]
[+] EMBL AA749985 [ ATTATGGGAAATCAGATCCAGCTTGTGTTGCCAAAGTGAAGGATCTATATAACGAACTTCATCTCCAGCGGGTGTTTTCTGAGTATGAAAGGGAGAGCTATGAAAAGCTGATCTCAGCCATCGAAGCACAACCGAATGAAGCAGTACGAGCGGTTCTGAA CTTTTTTGCACAAGATCTACAAGAGGAGCAAGTAGAACACGGCTG AAAT AGGCCAATTT GCATC ]
consensusID : consensus_4771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence
[GCGGGTGTACGGCACACTCAAGGCAGAGCTTCTCAAGGACCCCTCCTTCGACTTCAACGACGACGCCATCCAATGGCTCGAGAGCATGCTGGACTACAACGTGCTTGGTGGAAAATTGAACCGTGGCTTGGCTGTTGTTGAGAGCTACAAAATACTGAAAGCTGCTAGCGCAACAGAACCGAGCGAGGAGGAATTGTTTCTTGCATGCATCCTTGGTTGGGGCATCGAATGGGTACATGATACTTGTATGATTTAGTGACCTGGGATTATGAAACAACAATATTAGCAAAATATTTTCTAAACTTTTTTGTTCTTTGAGTAACCTGCAGCTTCAGGCCTATTTTCTGGTTCTTGATGATATAATGGATAACTCACAAACTCGACGAGGAAAACCCTGTTGGTTTAGGCTTCCCAAGGTCGGCCTCATAGCTATAAATGATGGACTCGTCCTTCGCAGCCAAATTTCAAGGATCTTTAGGCGCTATTTTCGTGGAAAAAGTTACTATGTTGATCTCCTAGAT]
[+] EMBL CF196676 [GCGGGTGTACGGCACACTCAAGGCAGAGCTTCTCAAGGACCCCTCCTTCGACTTCAACGACGACGCCATCCAATGGCTCGAGAGCATGCTGGACTACAACGTGCTTGGTGGAAAATTGAACCGTGGCTTGGCTGTTGTTGAGAGCTACAAAATACTGAAAGCTGCTAGCGCAACAGAACCGAGCGAGGAGGAATTGTTTCTTGCATGCATCCTTGGTTGGGGCATCGAATGGGTACATGATACTTGTATGATTTAGTGACCTGGGATTATGAAACAACAATATTAGCAAAATATTTTCTAAACTTTTTTGTTCTTTGAGTAACCTGCAGCTTCAGGCCTATTTTCTGGTTCTTGATGATATAATGGATAACTCACAAACTCGACGAGGAAAACCCTGTTGGTTTAGGCTTCCCAAGGTCGGCCTCATAGCTATAAATGATGGACTCGTCCTTCGCAGCCAAATTTCAAGGATCTTTAGGCGCTATTTTCGTGGAAAAAGTTACTATGTTGATCTCCTAGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4771#0 ------------------------------------------------------------
consensus_4771#1 GCGGGTGTACGGCACACTCAAGGCAGAGCTTCTCAAGGACCCCTCCTTCGACTTCAACGA 60
consensus_4771#0 ---------------------------------CTACAACGTGCTTGGTGGAAAATTGAA 27
consensus_4771#1 CGACGCCATCCAATGGCTCGAGAGCATGCTGGACTACAACGTGCTTGGTGGAAAATTGAA 120
***************************
consensus_4771#0 CCGTGGCTTGGCTGTTGTTGAGAGCTACAAAATACTGAAAGCTGCTAGCGCAACAGAACC 87
consensus_4771#1 CCGTGGCTTGGCTGTTGTTGAGAGCTACAAAATACTGAAAGCTGCTAGCGCAACAGAACC 180
************************************************************
consensus_4771#0 GAGCGAGGAGGAATTGTTTCTTGCATGCATCCTTGGTTGGGGCATCGAATGG-------- 139
consensus_4771#1 GAGCGAGGAGGAATTGTTTCTTGCATGCATCCTTGGTTGGGGCATCGAATGGGTACATGA 240
****************************************************
consensus_4771#0 ------------------------------------------------------------
consensus_4771#1 TACTTGTATGATTTAGTGACCTGGGATTATGAAACAACAATATTAGCAAAATATTTTCTA 300
consensus_4771#0 -----------------------------CTTCAGGCCTATTTTCTGGTTCTTGATGATA 170
consensus_4771#1 AACTTTTTTGTTCTTTGAGTAACCTGCAGCTTCAGGCCTATTTTCTGGTTCTTGATGATA 360
*******************************
consensus_4771#0 TAATGGATAACTCACAAACTCGACGAGGAAAACCCTGTTGGTTTAGGCTTCCCAAGGTCG 230
consensus_4771#1 TAATGGATAACTCACAAACTCGACGAGGAAAACCCTGTTGGTTTAGGCTTCCCAAGGTCG 420
************************************************************
consensus_4771#0 GCCTCATAGCTATAAATGATGGACTCGTCCTTCGCAGCAAAATTTCAAGGATCTTTAGGC 290
consensus_4771#1 GCCTCATAGCTATAAATGATGGACTCGTCCTTCGCAGCCAAATTTCAAGGATCTTTAGGC 480
************************************** *********************
consensus_4771#0 GCTATTTTCGTGGAAAAAGTTACTATGTTGATCTCCTAGATTTATTCAATGAGGTTGAAA 350
consensus_4771#1 GCTATTTTCGTGGAAAAAGTTACTATGTTGATCTCCTAGAT------------------- 521
*****************************************
consensus_4771#0 TTCAGACAACTTCAGGCCAGTTATTAGATCAAATTACAACAAATGAAGGAAGGAAAGATC 410
consensus_4771#1 ------------------------------------------------------------
consensus_4771#0 TGAACAAGTATAATGTACATGTATATAGGCGCATTGTGGAATATAAGACAGCTTACTATT 470
consensus_4771#1 ------------------------------------------------------------
consensus_4771#0 CATTTTATTTGCCGGTTGCATGCGCACTGCTGTTGTTTGGTGAGAGTTTGGACAATTATG 530
consensus_4771#1 ------------------------------------------------------------
consensus_4771#0 CTCAAGTGAAGCATATCCTAGTTGAGATGGGTGTTTACTTTCAAAGCCAGGATGATTATC 590
consensus_4771#1 ------------------------------------------------------------
consensus_4771#0 TGGACTGTTTTGGTGAACCAGAAATTATTGGCAAGATAGGAAGTGACATTGAAGATTTCA 650
consensus_4771#1 ------------------------------------------------------------
consensus_4771#0 AGTGTTCTTGGCTATTTGTTCAAGCACTTGAGCGCGCTGATGAGAAACAAAAAGGAGTCT 710
consensus_4771#1 ------------------------------------------------------------
consensus_4771#0 TGTTTGAAAATTATGGGAAATCAGATCCAGCTTGTGTTGCCAAAGTGAAGGATCTATATA 770
consensus_4771#1 ------------------------------------------------------------
consensus_4771#0 ACGAACTTCATCTCCAGCGGGTGTTTTCTGAGTATGAAAGGGAGAGCTATGAAAAGCTGA 830
consensus_4771#1 ------------------------------------------------------------
consensus_4771#0 TCTCAGCCATCGAAGCACAACCGAATGAAGCAGTACGAGCGGTTCTGAAATCTTTTCTGC 890
consensus_4771#1 ------------------------------------------------------------
consensus_4771#0 ACAAGATCTACAAGAGGAGCAAGTAGAACACGGCTGAAAAATAAGGCCAATTTTGGCATC 950
consensus_4771#1 ------------------------------------------------------------
consensus_4771#0 TCGTGGATTATTCTGGTTCTTGGCTTCTTGTTGGGATGTATAGCATAGGTGTGATAGGTT 1010
consensus_4771#1 ------------------------------------------------------------
consensus_4771#0 TCTAACTTCTGGGACTTTGCAACGAGGAACGTGCCTGATAAATAAGAAAA 1060
consensus_4771#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||