cluster # 4777

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Oryza sativa
cluster # 4777 cluster # 4777 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4777#0 length = 683 sequences # 2

consensus_4777#1 length = 217 sequences # 1

consensusID : consensus_4777#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 683
fasta sequence

                              [AGCACGGCTCAGAGTTGCAGACGACGCCGAGAAGACGAAGAAGAAAAGGAAAGCGGCGGGCACGGGATGGAGAGCAAGGTGAGGTGCGTGTGGTTTCTCCTGGTGGTTGCGGTGGTGGTGGCCGCCGGGGTGGAGACCGTGCGCGGCGCGGGGGAGTGCGGCCGCGTCCCCGTGGACCAGGTGGCGCTTAAGCTGGCGCCGTGCGCGGCGGCCACGCAGAACCCGCGCGCCGCGGTGCCGCCCAACTGCTGCGCGCAGGTGCGCAGCATCGGGCGGAACCCCAAGTGCCTGTGCGCCGTCATGCTGTCGAACACCGCGCGGAGCGCCGGCGTCAAGCCCGCCGTGGCCATGACCATCCCCAAGCGCTGCGCCATCGCCAACCGCCCCATCGGTTACAAATGTGGCCCATACACCCTGCCATGAGGAGCAAAGGGATGGAACTGGAAGGGCACTCGAACACTTTGACTATCCGATATATATATATATAAACTGATGTTACCTTTGTCACGTGAAACTTTTCATAAATCTTTCTAAATAACGCAGTTGTAATGACTCTGTTGAAATAAAGTACCTTTATGACTATCGAATAGTGGTGCTATCTATAAGAGAACAGTTTGATAAGTTCTGTGAAATTCAAGGATGTGACTTCTCCTGGATCTTTCTGAATAATGCAGTTGATGATT]

[+] EMBL AK105208             [AGCACGGCTCAGAGTTGCAGACGACGCCGAGAAGACGAAGAAGAAAAGGAAAGCGGCGGGCACGGGATGGAGAGCAAGGTGAGGTGCGTGTGGTTTCTCCTGGTGGTTGCGGTGGTGGTGGCCGCCGGGGTGGAGACCGTGCGCGGCGCGGGGGAGTGCGGCCGCGTCCCCGTGGACCAGGTGGCGCTTAAGCTGGCGCCGTGCGCGGCGGCCACGCAGAACCCGCGCGCCGCGGTGCCGCCCAACTGCTGCGCGCAGGTGCGCAGCATCGGGCGGAACCCCAAGTGCCTGTGCGCCGTCATGCTGTCGAACACCGCGCGGAGCGCCGGCGTCAAGCCCGCCGTGGCCATGACCATCCCCAAGCGCTGCGCCATCGCCAACCGCCCCATCGGTTACAAATGTGGCCCATACACCCTGCCATGAGGAGCAAAGGGATGGAACTGGAAGGGCACTCGAACACTTTGACTATCCGATATATATATATATAAACTGATGTTACCTTTGTCACGTGAAACTTTTCATAAATCTTTCTAAATAACGCAGTTGTAATGACTCTGTTGAAATAAAGTACCTTTATGACTATCGAATAGTGGTGCTATCTATAAGAGAACAGTTTGATAAGTTCTGTGAAATTCAAGGATGTGACTTCTCCTGGATCTTTCTGAATAATGCAGTTGATGATT]
[+] EMBL AK062916             [AGCACGGCTCAGAGTTGCAGACGACGCCGAGAAGACGAAGAAGAAAAGGAAAGCGGCGGGCACGGGATGGAGAGCAAGGTGAGGTGCGTGTGGTTTCTCCTGGTGGTTGCGGTGGTGGTGGCCGCCGGGGTGGAGACCGTGCGCGGCGCGGGGGAGTGCGGCCGCGTCCCCGTGGACCAGGTGGCGCTTAAGCTGGCGCCGTGCGCGGCGGCCACGCAGAACCCGCGCGCCGCGGTGCCGCCCAACTGCTGCGCGCAGGTGCGCAGCATCGGGCGGAACCCCAAGTGCCTGTGCGCCGTCATGCTGTCGAACACCGCGCGGAGCGCCGGCGTCAAGCCCGCCGTGGCCATGACCATCCCCAAGCGCTGCGCCATCGCCAACCGCCCCATCGGTTACAAATGTGGCCCATACACCCTGCCATGAGGAGCAAAGGGATGGAACTGGAAGGGCACTCGAACACTTTGACTATCCGATATATATATATATAAACTGATGTTACCTTTGTCACGTGAAACTTTTCATAAATCTTTCTAAATAACGCAGTTGTAATGACTCTGTTGAAATAAAGTAC                                                                                                                ]




>consensus_4777#0
AGCACGGCTCAGAGTTGCAGACGACGCCGAGAAGACGAAGAAGAAAAGGAAAGCGGCGGG
CACGGGATGGAGAGCAAGGTGAGGTGCGTGTGGTTTCTCCTGGTGGTTGCGGTGGTGGTG
GCCGCCGGGGTGGAGACCGTGCGCGGCGCGGGGGAGTGCGGCCGCGTCCCCGTGGACCAG
GTGGCGCTTAAGCTGGCGCCGTGCGCGGCGGCCACGCAGAACCCGCGCGCCGCGGTGCCG
CCCAACTGCTGCGCGCAGGTGCGCAGCATCGGGCGGAACCCCAAGTGCCTGTGCGCCGTC
ATGCTGTCGAACACCGCGCGGAGCGCCGGCGTCAAGCCCGCCGTGGCCATGACCATCCCC
AAGCGCTGCGCCATCGCCAACCGCCCCATCGGTTACAAATGTGGCCCATACACCCTGCCA
TGAGGAGCAAAGGGATGGAACTGGAAGGGCACTCGAACACTTTGACTATCCGATATATAT
ATATATAAACTGATGTTACCTTTGTCACGTGAAACTTTTCATAAATCTTTCTAAATAACG
CAGTTGTAATGACTCTGTTGAAATAAAGTACCTTTATGACTATCGAATAGTGGTGCTATC
TATAAGAGAACAGTTTGATAAGTTCTGTGAAATTCAAGGATGTGACTTCTCCTGGATCTT
TCTGAATAATGCAGTTGATGATT

consensusID : consensus_4777#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 217
fasta sequence

                              [AGCCGAGACAAGGGGATGGAACTGGAAGGGCCCTCGAACCCTTTGACTATCCGATATATATATAAACTGATGTTCCCTTTGTCCCGTGAAACTTTTCATAAATCTTTTTAAATAACGCAGTTGTAATGACTCTGTTGAAATAAAGTACCTTTATGACTATCGAATAGTGGTGCTATCTATAAGAGACCAGTTTGATAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA761472             [AGCCGAGACAAGGGGATGGAACTGGAAGGGCCCTCGAACCCTTTGACTATCCGATATATATATAAACTGATGTTCCCTTTGTCCCGTGAAACTTTTCATAAATCTTTTTAAATAACGCAGTTGTAATGACTCTGTTGAAATAAAGTACCTTTATGACTATCGAATAGTGGTGCTATCTATAAGAGACCAGTTTGATAAAAAAAAAAAAAAAAAAAAA]




>consensus_4777#1
AGCCGAGACAAGGGGATGGAACTGGAAGGGCCCTCGAACCCTTTGACTATCCGATATATA
TATAAACTGATGTTCCCTTTGTCCCGTGAAACTTTTCATAAATCTTTTTAAATAACGCAG
TTGTAATGACTCTGTTGAAATAAAGTACCTTTATGACTATCGAATAGTGGTGCTATCTAT
AAGAGACCAGTTTGATAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4777#0      AGCACGGCTCAGAGTTGCAGACGACGCCGAGAAGACGAAGAAGAAAAGGAAAGCGGCGGG 60
consensus_4777#1      ------------------------------------------------------------
                                                                                  

consensus_4777#0      CACGGGATGGAGAGCAAGGTGAGGTGCGTGTGGTTTCTCCTGGTGGTTGCGGTGGTGGTG 120
consensus_4777#1      ------------------------------------------------------------
                                                                                  

consensus_4777#0      GCCGCCGGGGTGGAGACCGTGCGCGGCGCGGGGGAGTGCGGCCGCGTCCCCGTGGACCAG 180
consensus_4777#1      ------------------------------------------------------------
                                                                                  

consensus_4777#0      GTGGCGCTTAAGCTGGCGCCGTGCGCGGCGGCCACGCAGAACCCGCGCGCCGCGGTGCCG 240
consensus_4777#1      ------------------------------------------------------------
                                                                                  

consensus_4777#0      CCCAACTGCTGCGCGCAGGTGCGCAGCATCGGGCGGAACCCCAAGTGCCTGTGCGCCGTC 300
consensus_4777#1      ------------------------------------------------------------
                                                                                  

consensus_4777#0      ATGCTGTCGAACACCGCGCGGAGCGCCGGCGTCAAGCCCGCCGTGGCCATGACCATCCCC 360
consensus_4777#1      ------------------------------------------------------------
                                                                                  

consensus_4777#0      AAGCGCTGCGCCATCGCCAACCGCCCCATCGGTTACAAATGTGGCCCATACACCCTGCCA 420
consensus_4777#1      -----------------------------------------------------------A 1
                                                                                 *

consensus_4777#0      TGAGGAGCAAAGGGATGGAACTGGAAGGGCACTCGAACACTTTGACTATCCGATATATAT 480
consensus_4777#1      GCCGAGACAAGGGGATGGAACTGGAAGGGCCCTCGAACCCTTTGACTATCCGATATATAT 61
                         *   *** ******************* ******* *********************

consensus_4777#0      ATATATAAACTGATGTTACCTTTGTCACGTGAAACTTTTCATAAATCTTTCTAAATAACG 540
consensus_4777#1      ----ATAAACTGATGTTCCCTTTGTCCCGTGAAACTTTTCATAAATCTTTTTAAATAACG 117
                          ************* ******** *********************** *********

consensus_4777#0      CAGTTGTAATGACTCTGTTGAAATAAAGTACCTTTATGACTATCGAATAGTGGTGCTATC 600
consensus_4777#1      CAGTTGTAATGACTCTGTTGAAATAAAGTACCTTTATGACTATCGAATAGTGGTGCTATC 177
                      ************************************************************

consensus_4777#0      TATAAGAGAACAGTTTGATAAGTTCTGTGAAATTCAAGGATGTGACTTCTCCTGGATCTT 660
consensus_4777#1      TATAAGAGACCAGTTTGATAAAAAAAAAAAAAAAAAAAAA-------------------- 217
                      ********* ***********        ***   **  *                    

consensus_4777#0      TCTGAATAATGCAGTTGATGATT 683
consensus_4777#1      -----------------------