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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4779#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2045 fasta sequence
[TCACACACCACGTCCCATCCCGTCGCGTCGCCGCACATTCACCCCCACACCCTTGCCGCGCCGCCCCGCCTGCCGTGCCGTCCGGCGAACCTACCTAGCCTAGCGCTAGCCTAGCTGAAGCCGGCAAGCAAGTGCAAACAGTGCCCAGGACCACCACCACCGCCATTGCCGCCACCTCTCCCTACAGCTGTTCGACTACGCCATTGTCGTCACTCACTCCACCGTACTACACTCGCCTTCTTCTCTCTCCTCTCCGACACGACAGCGACTTCTCCCTCCCGCCACCTTTTCCCTCCAAGAACCACCCCCCAAGAAAGCCCAGACCAGAGAGACAGTGTGCCGATGGCGATGGCGGTGGAGGGTGCGGGTGCGGGGGTGGTGGTGAGCGAGCCGGAGGTGGTGTCGATACCGCCGACGCCGAGGGGGATGTCGACGCCGGATGGGACGGCGACGCCGCCGCCGGCGGCGGGGAGGGGCGCGGCGACGCCGGCGACGCGGGTGGTGGAGAGGCTGCGGGGTTACCTGGAGGAGGTGGGACACCTGACGCGGCTGAACCCGCAGGACGCGTGGCTGCCCATCACCGAGTCCCGCAGCGGCAACGCCCGCTACGCCGCCTTCCACACCCTCAACGCCGGCCTCGGCTTCCAGGCCCTCCTCCTCCCCCTCGCCTTCCCCGCCCTCGGATGGAGCTGGGGAATAATATCACTTACTGTTGCTTATTTCTGGCAACTGTACACACTCTGGATTCTTGTCAAGCTCCATGAAGCTGTACCAGGAAGGAGGTACAACAGATATGTGGAGCTTGCACAAGCTGCATTTGGAGAAAAACTGGGAATGTGGCTATCTCTTTTCCCAACTATTTATCTGTCGGCAGGCAGTGCAACTGCGTTGATCCTTGTTGGAGGGGAGACCATGAAGCTCTTTTACCAAATAGTTTGCGGCCCAATCTGTTCACCGAGTCCGATTTCGACGATCGAATGGTACTTGGTGTTCACATCCTTGGCCATAGTCCTTTCCCAGCTTCCGAATCTCAACTCGATAGCCGGCGTTTCACTCATCGGTGGCACCACCGCAATAACATACTGTACCATGTCCTGGGTTCTCTCGGTCAGCCAACCGCAGCCTCCAACAGTCTCTTATGAACCACAAGCATACACTTCTCTTGGTTCATCTTTGTTCTCCACCTTGAATGCTCTTGGAATAATAGCATTTGCATTCAGGGGGCACAATCTTGCACTTGAAATACAGGCGACAATGCCGTCGACTTTCAAACATCCAGCACATGTCCCGATGTGGCGCGGGGCCAAAGTCGCATATGCCCTGTTTGCAATGTGCCTCTTCCCTGTCGCGATCGGAGGTTACTGGGCCTATGGAAACATGGTGCCACAGGGAGGGATGCTGACGGCGCTCTACGCCTTCCACAGCCACGACATCCCCCGGGGCCTCCTTGCTGCGACGTTCCTCCTTGTCGTGTTCAACTGCCTGAGCAGCTTCCAGATATACTCCATGCCGGTTTTCGACAGCTTTGAGGCTGCCTACACGGGCCGGACCAACCGGCCTTGCTCGGTCTGGGTGAGATCAGGCTTCAGGGTGTTCTACGGCTTCCTCTCGCTGTTCATCAGCGTCGCGCTGCCGTTCCTCTCCAGCCTCGCCGGCCTGCTTGGGGGGCTGACA-TTGCCGGTCACCTTCGCCTACCCGTGCTTCATGTGGATCTGCATCAAGAAGCCTGAGAGGTTCAGCTCAGGATGGTACCTGAACTGGGGGCTTGGGCTGCTTGGCACTGCATTCAGCCTGGCTCTCTGTGTGGGTGGTGTCTGGAGCATCATCAGCAGTGGGATGAAGTTCAAGTTCTTCAAGCCCCCAAGCTAGATTGACCAGCAATTTCCAGTATCAAACTTGCAAAATCAGTACAAATTCTGGTGTGTTTGTGATATTTTCAGACAATGGAAA-AGCATATCCCAGCTGGCCTCCGCATTGTGGGTGTGCTTGTCATATGGTTATATGAATGATATATGATGATGATATATATGGTTTATCTTAAAAAA]
[+] EMBL AK100852 [TCACACACCACGTCCCATCCCGTCGCGTCGCCGCACATTCACCCCCACACCCTTGCCGCGCCGCCCCGCCTGCCGTGCCGTCCGGCGAACCTACCTAGCCTAGCGCTAGCCTAGCTGAAGCCGGCAAGCAAGTGCAAACAGTGCCCAGGACCACCACCACCGCCATTGCCGCCACCTCTCCCTACAGCTGTTCGACTACGCCATTGTCGTCACTCACTCCACCGTACTACACTCGCCTTCTTCTCTCTCCTCTCCGACACGACAGCGACTTCTCCCTCCCGCCACCTTTTCCCTCCAAGAACCACCCCCCAAGAAAGCCCAGACCAGAGAGACAGTGTGCCGATGGCGATGGCGGTGGAGGGTGCGGGTGCGGGGGTGGTGGTGAGCGAGCCGGAGGTGGTGTCGATACCGCCGACGCCGAGGGGGATGTCGACGCCGGATGGGACGGCGACGCCGCCGCCGGCGGCGGGGAGGGGCGCGGCGACGCCGGCGACGCGGGTGGTGGAGAGGCTGCGGGGTTACCTGGAGGAGGTGGGACACCTGACGCGGCTGAACCCGCAGGACGCGTGGCTGCCCATCACCGAGTCCCGCAGCGGCAACGCCCGCTACGCCGCCTTCCACACCCTCAACGCCGGCCTCGGCTTCCAGGCCCTCCTCCTCCCCCTCGCCTTCCCCGCCCTCGGATGGAGCTGGGGAATAATATCACTTACTGTTGCTTATTTCTGGCAACTGTACACACTCTGGATTCTTGTCAAGCTCCATGAAGCTGTACCAGGAAGGAGGTACAACAGATATGTGGAGCTTGCACAAGCTGCATTTGGAGAAAAACTGGGAATGTGGCTATCTCTTTTCCCAACTATTTATCTGTCGGCAGGCAGTGCAACTGCGTTGATCCTTGTTGGAGGGGAGACCATGAAGCTCTTTTACCAAATAGTTTGCGGCCCAATCTGTTCACCGAGTCCGATTTCGACGATCGAATGGTACTTGGTGTTCACATCCTTGGCCATAGTCCTTTCCCAGCTTCCGAATCTCAACTCGATAGCCGGCGTTTCACTCATCGGTGGCACCACCGCAATAACATACTGTACCATGTCCTGGGTTCTCTCGGTCAGCCAACCGCAGCCTCCAACAGTCTCTTATGAACCACAAGCATACACTTCTCTTGGTTCATCTTTGTTCTCCACCTTGAATGCTCTTGGAATAATAGCATTTGCATTCAGGGGGCACAATCTTGCACTTGAAATACAGGCGACAATGCCGTCGACTTTCAAACATCCAGCACATGTCCCGATGTGGCGCGGGGCCAAAGTCGCATATGCCCTGTTTGCAATGTGCCTCTTCCCTGTCGCGATCGGAGGTTACTGGGCCTATGGAAACATGGTGCCACAGGGAGGGATGCTGACGGCGCTCTACGCCTTCCACAGCCACGACATCCCCCGGGGCCTCCTTGCTGCGACGTTCCTCCTTGTCGTGTTCAACTGCCTGAGCAGCTTCCAGATATACTCCATGCCGGTTTTCGACAGCTTTGAGGCTGCCTACACGGGCCGGACCAACCGGCCTTGCTCGGTCTGGGTGAGATCAGGCTTCAGGGTGTTCTACGGCTTCCTCTCGCTGTTCATCAGCGTCGCGCTGCCGTTCCTCTCCAGCCTCGCCGGCCTGCTTGGGGGGCTGACA TTGCCGGTCACCTTCGCCTACCCGTGCTTCATGTGGATCTGCATCAAGAAGCCTGAGAGGTTCAGCTCAGGATGGTACCTGAACTGGGGGCTTGGGCTGCTTGGCACTGCATTCAGCCTGGCTCTCTGTGTGGGTGGTGTCTGGAGCATCATCAGCAGTGGGATGAAGTTCAAGTTCTTCAAGCCCCCAAGCTAGATTGACCAGCAATTTCCAGTATCAAACTTGCAAAATCAGTACAAATTCTGGTGTGTTTGTGATATTTTCAGACAATGGAAA AGCATATCCCAGCTGGCCTCCGCATTGTGGGTGTGCTTGTCATATGGTTATATGAATGATATA ]
[+] EMBL BI805091 [ TTGCTCGTTCTGGGTGAGATCAGGCTTCAGGGTGTTCTATGGCTTCCTCTCGCTGTTCATCAGCGTCGCGCT CCGTTCCTCTCCAGCCTCGCCGGCCTGCTTGGGGGGCTGACACTTGCCGGTCACCTTCGCCTACCCGTGCTTCATGTGGATCTGCATCAAGAAGCCTGAGAGGTTCAGCTCAGGATGGTACCTGAACTGGGGGCTTGGGCTGCTTGGCACTGCATTCAGCCTGGCTCTCTGTGT GGTGGTGTCTGGAGCATCATCAGCAGTGGGATGAAGTTCAAGTTCTTCAAGCCCCCAAGCTAGATTGACCAGCAATTTCCAGTATCAAACTTGCAAAATCAGTACAAATTCTGGTGTGTTTGTGATATTTTCAGAC ATGGAAAGAGCATATCCCAGCTGGCCTCCGC TTGTGGGTGTGCTTGTCATATGGTTATATGAATGATATATGATGATGATATATATGGTTTATCTTAAAAAA]
consensusID : consensus_4779#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence
[CTTGGGGGCTGACANTGCCCGGTCACCTTCGCTCTACCCGNTCTTCATGTGGATCTGCATCAAGAAGCCTGTAGAGGTTCAGCTCAGGATGGTACCTGAACTGGGGCTTGGCTGCTTGGGCANCTGCATTCAGCCTGGCTCTCTGTGTGGGTGGTGTCTGGAGCATCATCACAAGTGGGATGAAGTTCAAGTTCTTCAAGCCACCCAAGCTAGATTGACCAACCAATTTGCCAAGTGATCAAAACNNTGCAAAATCAAGTACAAATTCTGGTGTGTTTGTGATATTTTCAGACAATGGAAAAGCATATCCCAGCTGGCACNNCCAGCATTTGTGGGTGTGCATTGTCATATGGTTATATGAATGATATATGATGATGATATATATGGTGTTATCTTAAAAA]
[+] EMBL BI806263 [CTTGGGGGCTGACANTGCCCGGTCACCTTCGCTCTACCCGNTCTTCATGTGGATCTGCATCAAGAAGCCTGTAGAGGTTCAGCTCAGGATGGTACCTGAACTGGGGCTTGGCTGCTTGGGCANCTGCATTCAGCCTGGCTCTCTGTGTGGGTGGTGTCTGGAGCATCATCACAAGTGGGATGAAGTTCAAGTTCTTCAAGCCACCCAAGCTAGATTGACCAACCAATTTGCCAAGTGATCAAAACNNTGCAAAATCAAGTACAAATTCTGGTGTGTTTGTGATATTTTCAGACAATGGAAAAGCATATCCCAGCTGGCACNNCCAGCATTTGTGGGTGTGCATTGTCATATGGTTATATGAATGATATATGATGATGATATATATGGTGTTATCTTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4779#0 TCACACACCACGTCCCATCCCGTCGCGTCGCCGCACATTCACCCCCACACCCTTGCCGCG 60
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 CCGCCCCGCCTGCCGTGCCGTCCGGCGAACCTACCTAGCCTAGCGCTAGCCTAGCTGAAG 120
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 CCGGCAAGCAAGTGCAAACAGTGCCCAGGACCACCACCACCGCCATTGCCGCCACCTCTC 180
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 CCTACAGCTGTTCGACTACGCCATTGTCGTCACTCACTCCACCGTACTACACTCGCCTTC 240
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 TTCTCTCTCCTCTCCGACACGACAGCGACTTCTCCCTCCCGCCACCTTTTCCCTCCAAGA 300
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 ACCACCCCCCAAGAAAGCCCAGACCAGAGAGACAGTGTGCCGATGGCGATGGCGGTGGAG 360
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 GGTGCGGGTGCGGGGGTGGTGGTGAGCGAGCCGGAGGTGGTGTCGATACCGCCGACGCCG 420
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 AGGGGGATGTCGACGCCGGATGGGACGGCGACGCCGCCGCCGGCGGCGGGGAGGGGCGCG 480
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 GCGACGCCGGCGACGCGGGTGGTGGAGAGGCTGCGGGGTTACCTGGAGGAGGTGGGACAC 540
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 CTGACGCGGCTGAACCCGCAGGACGCGTGGCTGCCCATCACCGAGTCCCGCAGCGGCAAC 600
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 GCCCGCTACGCCGCCTTCCACACCCTCAACGCCGGCCTCGGCTTCCAGGCCCTCCTCCTC 660
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 CCCCTCGCCTTCCCCGCCCTCGGATGGAGCTGGGGAATAATATCACTTACTGTTGCTTAT 720
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 TTCTGGCAACTGTACACACTCTGGATTCTTGTCAAGCTCCATGAAGCTGTACCAGGAAGG 780
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 AGGTACAACAGATATGTGGAGCTTGCACAAGCTGCATTTGGAGAAAAACTGGGAATGTGG 840
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 CTATCTCTTTTCCCAACTATTTATCTGTCGGCAGGCAGTGCAACTGCGTTGATCCTTGTT 900
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 GGAGGGGAGACCATGAAGCTCTTTTACCAAATAGTTTGCGGCCCAATCTGTTCACCGAGT 960
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 CCGATTTCGACGATCGAATGGTACTTGGTGTTCACATCCTTGGCCATAGTCCTTTCCCAG 1020
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 CTTCCGAATCTCAACTCGATAGCCGGCGTTTCACTCATCGGTGGCACCACCGCAATAACA 1080
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 TACTGTACCATGTCCTGGGTTCTCTCGGTCAGCCAACCGCAGCCTCCAACAGTCTCTTAT 1140
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 GAACCACAAGCATACACTTCTCTTGGTTCATCTTTGTTCTCCACCTTGAATGCTCTTGGA 1200
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 ATAATAGCATTTGCATTCAGGGGGCACAATCTTGCACTTGAAATACAGGCGACAATGCCG 1260
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 TCGACTTTCAAACATCCAGCACATGTCCCGATGTGGCGCGGGGCCAAAGTCGCATATGCC 1320
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 CTGTTTGCAATGTGCCTCTTCCCTGTCGCGATCGGAGGTTACTGGGCCTATGGAAACATG 1380
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 GTGCCACAGGGAGGGATGCTGACGGCGCTCTACGCCTTCCACAGCCACGACATCCCCCGG 1440
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 GGCCTCCTTGCTGCGACGTTCCTCCTTGTCGTGTTCAACTGCCTGAGCAGCTTCCAGATA 1500
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 TACTCCATGCCGGTTTTCGACAGCTTTGAGGCTGCCTACACGGGCCGGACCAACCGGCCT 1560
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 TGCTCGGTCTGGGTGAGATCAGGCTTCAGGGTGTTCTACGGCTTCCTCTCGCTGTTCATC 1620
consensus_4779#1 ------------------------------------------------------------
consensus_4779#0 AGCGTCGCGCTGCCGTTCCTCTCCAGCCTCGCCGGCCTGCTTGGGGGGCTGACATTGCC- 1679
consensus_4779#1 ----------------------------------------CTTGGGGGCTGACANTGCCC 20
* *********** ****
consensus_4779#0 GGTCACCTTCGC-CTACCCGTGCTTCATGTGGATCTGCATCAAGAAGCCTG-AGAGGTTC 1737
consensus_4779#1 GGTCACCTTCGCTCTACCCGNTCTTCATGTGGATCTGCATCAAGAAGCCTGTAGAGGTTC 80
************ ******* ***************************** ********
consensus_4779#0 AGCTCAGGATGGTACCTGAACTGGGGGCTTGGGCTGCTTGGC--ACTGCATTCAGCCTGG 1795
consensus_4779#1 AGCTCAGGATGGTACCTGAACTGGGG--CTTGGCTGCTTGGGCANCTGCATTCAGCCTGG 138
************************** * ********** ***************
consensus_4779#0 CTCTCTGTGTGGGTGGTGTCTGGAGCATCATCAGCAGTGGGATGAAGTTCAAGTTCTTCA 1855
consensus_4779#1 CTCTCTGTGTGGGTGGTGTCTGGAGCATCATCACAAGTGGGATGAAGTTCAAGTTCTTCA 198
********************************* *************************
consensus_4779#0 AGCC-CCCAAGCTAGATTGACCAGC-AATTTCC--AGT-ATCAAA--CTTGCAAAATCA- 1907
consensus_4779#1 AGCCACCCAAGCTAGATTGACCAACCAATTTGCCAAGTGATCAAAACNNTGCAAAATCAA 258
**** ****************** * ***** * *** ****** **********
consensus_4779#0 GTACAAATTCTGGTGTGTTTGTGATATTTTCAGACAATGGAAAAGCATATCCCAGCTGGC 1967
consensus_4779#1 GTACAAATTCTGGTGTGTTTGTGATATTTTCAGACAATGGAAAAGCATATCCCAGCTGGC 318
************************************************************
consensus_4779#0 CTCCGCA----TTGTGGGTGTGC-TTGTCATATGGTTATATGAATGATATATGATGATGA 2022
consensus_4779#1 ACNNCCAGCATTTGTGGGTGTGCATTGTCATATGGTTATATGAATGATATATGATGATGA 378
** ************ ************************************
consensus_4779#0 TATATATGGT-TTATCTTAAAAAA 2045
consensus_4779#1 TATATATGGTGTTATCTTAAAAA- 401
********** ************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||