These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [CCCTGACGCCCGTCTCCTCGTCGCCGCCGCCGCCGCCGCCGAGCGCCGCCGCCTAATCCTCGCCGCAGATCTGGCATCCCCCATGCCCGACGTCATCTCCGCCCCCGATGCTGAAACCACCGGCGGCGGCGGCTCGTCGCCGCACGTGGAGAAGCTGAGGAAGATGCTGTTCCGGAGGATGCTGGTGGGGGTGAACGACGGGCGCTACTTCCTCGGGCTGTTCCACTGCGTCGACAAGCAGGGGAACATCCTCCTCCAGGACGCCGTGGAGTACAGGACCAGCGCGCGGCGGCGGTCGCCGTCTTCGCCGTCGTCTTCACCCGCGGAGCAGCGCGGCCTCGGCCTCATCCTCATCCCGGCCGCCTGCCGCTCCTCCTGCCATGTCGACTGCGCCGTCGAGGAGAGCATGTCGCTCCTCTCTCTCGACAGGTGAAGATGAATGAGATATACATATGCTTCTCTAGCTTTTTTTTTTTACTCTTTTTTTCTGATTGCAATAGCTAATAAACTAGCTTTTCAGCCTTGGATGAACTTATGTATGAAAATATTTTTGCTGTGGATTAATTTGCTATCATTTCTGTCATATGGGTTGCTGTTCATCTTTCACTCCTGTAGTCTGTAGAACAGAACAGATCAGTGATATACTGCTACTGGTTGCATCTCACTACGGTCAGTTTACTGGCCGAGAGTTCTTCA] [+] EMBL AK063252 [CCCTGACGCCCGTCTCCTCGTCGCCGCCGCCGCCGCCGCCGAGCGCCGCCGCCTAATCCTCGCCGCAGATCTGGCATCCCCCATGCCCGACGTCATCTCCGCCCCCGATGCTGAAACCACCGGCGGCGGCGGCTCGTCGCCGCACGTGGAGAAGCTGAGGAAGATGCTGTTCCGGAGGATGCTGGTGGGGGTGAACGACGGGCGCTACTTCCTCGGGCTGTTCCACTGCGTCGACAAGCAGGGGAACATCCTCCTCCAGGACGCCGTGGAGTACAGGACCAGCGCGCGGCGGCGGTCGCCGTCTTCGCCGTCGTCTTCACCCGCGGAGCAGCGCGGCCTCGGCCTCATCCTCATCCCGGCCGCCTGCCGCTCCTCCTGCCATGTCGACTGCGCCGTCGAGGAGAGCATGTCGCTCCTCTCTCTCGACAGGTGAAGATGAATGAGATATACATATGCTTCTCTAGCTTTTTTTTTTTACTCTTTTTTTCTGATTGCAATAGCTAATAAACTAGCTTTTCAGCCTTGGATGAACTTATGTATGAAAATATTTTTGCTGTGGATTAATTTGCTATCATTTCTGTCATATGGGTTGCTGTTCATCTTTCACTCCTGTAGTCTGTAGAACAGAACAGATCAGTGATATACTGCTACTGGTTGCATCTCACTACGGTCAGTTTACTGGCCGAGAGTTCTTCA] consensusID : consensus_478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 127 fasta sequence [CTGGCATCCCCATGCCCGACGTCATCTCCGCCCCCGATGCTGAAACCACCGGCGAGACGAGCGAGACTCGATCGACCGACGTGGAGAAGCTGAGGTAAGGATGCTGTTCCGGAGATGACTAGTGAGT] [+] EMBL AA751076 [CTGGCATCCCCATGCCCGACGTCATCTCCGCCCCCGATGCTGAAACCACCGGCGAGACGAGCGAGACTCGATCGACCGACGTGGAGAAGCTGAGGTAAGGATGCTGTTCCGGAGATGACTAGTGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_478#0 CCCTGACGCCCGTCTCCTCGTCGCCGCCGCCGCCGCCGCCGAGCGCCGCCGCCTAATCCT 60 consensus_478#1 ------------------------------------------------------------ consensus_478#0 CGCCGCAGATCTGGCATCCCCCATGCCCGACGTCATCTCCGCCCCCGATGCTGAAACCAC 120 consensus_478#1 ----------CTGGCATCCCC-ATGCCCGACGTCATCTCCGCCCCCGATGCTGAAACCAC 49 *********** ************************************** consensus_478#0 CGGCGGCG-----GCGGCTCG-TCGCCGCACGTGGAGAAGCTGAGG--AAGATGCTGTTC 172 consensus_478#1 CGGCGAGACGAGCGAGACTCGATCGACCGACGTGGAGAAGCTGAGGTAAGGATGCTGTTC 109 ***** * * **** *** * ***************** * ********** consensus_478#0 CGGAGGATGCTGGTGGGGGTGAACGACGGGCGCTACTTCCTCGGGCTGTTCCACTGCGTC 232 consensus_478#1 CGGAGATGACTAGTGAGT------------------------------------------ 127 ***** ** *** * consensus_478#0 GACAAGCAGGGGAACATCCTCCTCCAGGACGCCGTGGAGTACAGGACCAGCGCGCGGCGG 292 consensus_478#1 ------------------------------------------------------------ consensus_478#0 CGGTCGCCGTCTTCGCCGTCGTCTTCACCCGCGGAGCAGCGCGGCCTCGGCCTCATCCTC 352 consensus_478#1 ------------------------------------------------------------ consensus_478#0 ATCCCGGCCGCCTGCCGCTCCTCCTGCCATGTCGACTGCGCCGTCGAGGAGAGCATGTCG 412 consensus_478#1 ------------------------------------------------------------ consensus_478#0 CTCCTCTCTCTCGACAGGTGAAGATGAATGAGATATACATATGCTTCTCTAGCTTTTTTT 472 consensus_478#1 ------------------------------------------------------------ consensus_478#0 TTTTACTCTTTTTTTCTGATTGCAATAGCTAATAAACTAGCTTTTCAGCCTTGGATGAAC 532 consensus_478#1 ------------------------------------------------------------ consensus_478#0 TTATGTATGAAAATATTTTTGCTGTGGATTAATTTGCTATCATTTCTGTCATATGGGTTG 592 consensus_478#1 ------------------------------------------------------------ consensus_478#0 CTGTTCATCTTTCACTCCTGTAGTCTGTAGAACAGAACAGATCAGTGATATACTGCTACT 652 consensus_478#1 ------------------------------------------------------------ consensus_478#0 GGTTGCATCTCACTACGGTCAGTTTACTGGCCGAGAGTTCTTCA 696 consensus_478#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||