cluster # 478

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Oryza sativa
cluster # 478 cluster # 478 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_478#0 length = 696 sequences # 1

consensus_478#1 length = 127 sequences # 1

consensusID : consensus_478#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 696
fasta sequence

                              [CCCTGACGCCCGTCTCCTCGTCGCCGCCGCCGCCGCCGCCGAGCGCCGCCGCCTAATCCTCGCCGCAGATCTGGCATCCCCCATGCCCGACGTCATCTCCGCCCCCGATGCTGAAACCACCGGCGGCGGCGGCTCGTCGCCGCACGTGGAGAAGCTGAGGAAGATGCTGTTCCGGAGGATGCTGGTGGGGGTGAACGACGGGCGCTACTTCCTCGGGCTGTTCCACTGCGTCGACAAGCAGGGGAACATCCTCCTCCAGGACGCCGTGGAGTACAGGACCAGCGCGCGGCGGCGGTCGCCGTCTTCGCCGTCGTCTTCACCCGCGGAGCAGCGCGGCCTCGGCCTCATCCTCATCCCGGCCGCCTGCCGCTCCTCCTGCCATGTCGACTGCGCCGTCGAGGAGAGCATGTCGCTCCTCTCTCTCGACAGGTGAAGATGAATGAGATATACATATGCTTCTCTAGCTTTTTTTTTTTACTCTTTTTTTCTGATTGCAATAGCTAATAAACTAGCTTTTCAGCCTTGGATGAACTTATGTATGAAAATATTTTTGCTGTGGATTAATTTGCTATCATTTCTGTCATATGGGTTGCTGTTCATCTTTCACTCCTGTAGTCTGTAGAACAGAACAGATCAGTGATATACTGCTACTGGTTGCATCTCACTACGGTCAGTTTACTGGCCGAGAGTTCTTCA]

[+] EMBL AK063252             [CCCTGACGCCCGTCTCCTCGTCGCCGCCGCCGCCGCCGCCGAGCGCCGCCGCCTAATCCTCGCCGCAGATCTGGCATCCCCCATGCCCGACGTCATCTCCGCCCCCGATGCTGAAACCACCGGCGGCGGCGGCTCGTCGCCGCACGTGGAGAAGCTGAGGAAGATGCTGTTCCGGAGGATGCTGGTGGGGGTGAACGACGGGCGCTACTTCCTCGGGCTGTTCCACTGCGTCGACAAGCAGGGGAACATCCTCCTCCAGGACGCCGTGGAGTACAGGACCAGCGCGCGGCGGCGGTCGCCGTCTTCGCCGTCGTCTTCACCCGCGGAGCAGCGCGGCCTCGGCCTCATCCTCATCCCGGCCGCCTGCCGCTCCTCCTGCCATGTCGACTGCGCCGTCGAGGAGAGCATGTCGCTCCTCTCTCTCGACAGGTGAAGATGAATGAGATATACATATGCTTCTCTAGCTTTTTTTTTTTACTCTTTTTTTCTGATTGCAATAGCTAATAAACTAGCTTTTCAGCCTTGGATGAACTTATGTATGAAAATATTTTTGCTGTGGATTAATTTGCTATCATTTCTGTCATATGGGTTGCTGTTCATCTTTCACTCCTGTAGTCTGTAGAACAGAACAGATCAGTGATATACTGCTACTGGTTGCATCTCACTACGGTCAGTTTACTGGCCGAGAGTTCTTCA]




>consensus_478#0
CCCTGACGCCCGTCTCCTCGTCGCCGCCGCCGCCGCCGCCGAGCGCCGCCGCCTAATCCT
CGCCGCAGATCTGGCATCCCCCATGCCCGACGTCATCTCCGCCCCCGATGCTGAAACCAC
CGGCGGCGGCGGCTCGTCGCCGCACGTGGAGAAGCTGAGGAAGATGCTGTTCCGGAGGAT
GCTGGTGGGGGTGAACGACGGGCGCTACTTCCTCGGGCTGTTCCACTGCGTCGACAAGCA
GGGGAACATCCTCCTCCAGGACGCCGTGGAGTACAGGACCAGCGCGCGGCGGCGGTCGCC
GTCTTCGCCGTCGTCTTCACCCGCGGAGCAGCGCGGCCTCGGCCTCATCCTCATCCCGGC
CGCCTGCCGCTCCTCCTGCCATGTCGACTGCGCCGTCGAGGAGAGCATGTCGCTCCTCTC
TCTCGACAGGTGAAGATGAATGAGATATACATATGCTTCTCTAGCTTTTTTTTTTTACTC
TTTTTTTCTGATTGCAATAGCTAATAAACTAGCTTTTCAGCCTTGGATGAACTTATGTAT
GAAAATATTTTTGCTGTGGATTAATTTGCTATCATTTCTGTCATATGGGTTGCTGTTCAT
CTTTCACTCCTGTAGTCTGTAGAACAGAACAGATCAGTGATATACTGCTACTGGTTGCAT
CTCACTACGGTCAGTTTACTGGCCGAGAGTTCTTCA

consensusID : consensus_478#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 127
fasta sequence

                              [CTGGCATCCCCATGCCCGACGTCATCTCCGCCCCCGATGCTGAAACCACCGGCGAGACGAGCGAGACTCGATCGACCGACGTGGAGAAGCTGAGGTAAGGATGCTGTTCCGGAGATGACTAGTGAGT]

[+] EMBL AA751076             [CTGGCATCCCCATGCCCGACGTCATCTCCGCCCCCGATGCTGAAACCACCGGCGAGACGAGCGAGACTCGATCGACCGACGTGGAGAAGCTGAGGTAAGGATGCTGTTCCGGAGATGACTAGTGAGT]




>consensus_478#1
CTGGCATCCCCATGCCCGACGTCATCTCCGCCCCCGATGCTGAAACCACCGGCGAGACGA
GCGAGACTCGATCGACCGACGTGGAGAAGCTGAGGTAAGGATGCTGTTCCGGAGATGACT
AGTGAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_478#0      CCCTGACGCCCGTCTCCTCGTCGCCGCCGCCGCCGCCGCCGAGCGCCGCCGCCTAATCCT 60
consensus_478#1      ------------------------------------------------------------
                                                                                 

consensus_478#0      CGCCGCAGATCTGGCATCCCCCATGCCCGACGTCATCTCCGCCCCCGATGCTGAAACCAC 120
consensus_478#1      ----------CTGGCATCCCC-ATGCCCGACGTCATCTCCGCCCCCGATGCTGAAACCAC 49
                               *********** **************************************

consensus_478#0      CGGCGGCG-----GCGGCTCG-TCGCCGCACGTGGAGAAGCTGAGG--AAGATGCTGTTC 172
consensus_478#1      CGGCGAGACGAGCGAGACTCGATCGACCGACGTGGAGAAGCTGAGGTAAGGATGCTGTTC 109
                     *****        * * **** *** *  *****************  * **********

consensus_478#0      CGGAGGATGCTGGTGGGGGTGAACGACGGGCGCTACTTCCTCGGGCTGTTCCACTGCGTC 232
consensus_478#1      CGGAGATGACTAGTGAGT------------------------------------------ 127
                     *****    ** *** *                                           

consensus_478#0      GACAAGCAGGGGAACATCCTCCTCCAGGACGCCGTGGAGTACAGGACCAGCGCGCGGCGG 292
consensus_478#1      ------------------------------------------------------------
                                                                                 

consensus_478#0      CGGTCGCCGTCTTCGCCGTCGTCTTCACCCGCGGAGCAGCGCGGCCTCGGCCTCATCCTC 352
consensus_478#1      ------------------------------------------------------------
                                                                                 

consensus_478#0      ATCCCGGCCGCCTGCCGCTCCTCCTGCCATGTCGACTGCGCCGTCGAGGAGAGCATGTCG 412
consensus_478#1      ------------------------------------------------------------
                                                                                 

consensus_478#0      CTCCTCTCTCTCGACAGGTGAAGATGAATGAGATATACATATGCTTCTCTAGCTTTTTTT 472
consensus_478#1      ------------------------------------------------------------
                                                                                 

consensus_478#0      TTTTACTCTTTTTTTCTGATTGCAATAGCTAATAAACTAGCTTTTCAGCCTTGGATGAAC 532
consensus_478#1      ------------------------------------------------------------
                                                                                 

consensus_478#0      TTATGTATGAAAATATTTTTGCTGTGGATTAATTTGCTATCATTTCTGTCATATGGGTTG 592
consensus_478#1      ------------------------------------------------------------
                                                                                 

consensus_478#0      CTGTTCATCTTTCACTCCTGTAGTCTGTAGAACAGAACAGATCAGTGATATACTGCTACT 652
consensus_478#1      ------------------------------------------------------------
                                                                                 

consensus_478#0      GGTTGCATCTCACTACGGTCAGTTTACTGGCCGAGAGTTCTTCA 696
consensus_478#1      --------------------------------------------