These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4789#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [AGTACGTTGTCACACTGTCACTATGCNCGTCTTAGCACTTTATTTTGGTTCACTACTTAATGCTTTGAGACGACGAATTGGTGAAGAAGAGAGGGAATTGAAAAAAGCAGCCGCGAAGCGTGGGCTGATTCCTCTGTTGATANCCAAGCTAAGGGGGAAGAAAGTCGACCCACCACCACAAGGATCTTCACCTACATCTCTGTTGTCAACAAANCTGCTACTCCAGGTTGTATTTGTGGCGGTAGTANCTGTCTCACTTCNTTACTTGTCNAACAGTTGAAGATTGATGCCNTTGTGTTCNATTTTGANCNATGTCCNAAACCACNGCTGTNGATTGTATTGATCATTTCNTTTATGTTTCNTATATTATATCCACNGTNGCGCNAGGTGTTGTGCTTTTGCATCCNAGCCATCNTGTCTTAACTTCNTCCTGGACTGTTGAAATTGACTTGANATGATACCNTATCCTCCTTGCATTGTGTNCATCTTTTGCCGCNAGCAATGTTATTCATTTTCCCAAAATTTAANAAAGGAACTGATNTNGGAATNTTCNTCCATGCCTCCAAAAAAAAGGTTACCCACNN] [+] EMBL BE229696 [AGTACGTTGTCACACTGTCACTATGCNCGTCTTAGCACTTTATTTTGGTTCACTACTTAATGCTTTGAGACGACGAATTGGTGAAGAAGAGAGGGAATTGAAAAAAGCAGCCGCGAAGCGTGGGCTGATTCCTCTGTTGATANCCAAGCTAAGGGGGAAGAAAGTCGACCCACCACCACAAGGATCTTCACCTACATCTCTGTTGTCAACAAANCTGCTACTCCAGGTTGTATTTGTGGCGGTAGTANCTGTCTCACTTCNTTACTTGTCNAACAGTTGAAGATTGATGCCNTTGTGTTCNATTTTGANCNATGTCCNAAACCACNGCTGTNGATTGTATTGATCATTTCNTTTATGTTTCNTATATTATATCCACNGTNGCGCNAGGTGTTGTGCTTTTGCATCCNAGCCATCNTGTCTTAACTTCNTCCTGGACTGTTGAAATTGACTTGANATGATACCNTATCCTCCTTGCATTGTGTNCATCTTTTGCCGCNAGCAATGTTATTCATTTTCCCAAAATTTAANAAAGGAACTGATNTNGGAATNTTCNTCCATGCCTCCAAAAAAAAGGTTACCCACNN] consensusID : consensus_4789#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 558 fasta sequence [TCCTGATGCTAATCAAGGATTTGACATCCCATCAGCTTTGGTAACATTTCCTGAGTTCAATTCTAGCCGAAGTTATCTTGAAGGTGATACATTATTTGTGTCACCTTTGCTACAAACGTTCAAGGAAGATGGCGTGGTCAAGTCATATACAGAAGTATTGCTTGTTCCCTTGACAACTCCTGATTTCAGCATGCCATACAATGTCATCTCCTTCACTTGCGCCGTGTTAGCAATTTATTTTGGTTCAGTACTTAATGCTTTGAGACGTCGAATTGGTGAAGAAGAGAGGGAATTGAAAAAAGCACCCGCGAAGCGTGGGCTGATTCCTCTGTTGATAGCCAAGATAAGGGGGAAGAAGGTGGACCCGCCACCACAAGGATCTTCTCTTACATGTTTGTTGTCAACAAAGCTGGTCCTCAAGGTTGTATTTGTGGCGGTAGTAGCTGTCTCACTTCATTATTTGTCAGACAGTTGAGGATTGATGCCATTGTGTCCAATTTTGAGCAATGTCCAAAACCACGCCTGTAGATTGTATTGATCATTTCGTTTATGTATCAA] [-] EMBL CB648822 [TCCTGATGCTAATCAAGGATTTGACATCCCATCAGCTTTGGTAACATTTCCTGAGTTCAATTCTAGCCGAAGTTATCTTGAAGGTGATACATTATTTGTGTCACCTTTGCTACAAACGTTCAAGGAAGATGGCGTGGTCAAGTCATATACAGAAGTATTGCTTGTTCCCTTGACAACTCCTGATTTCAGCATGCCATACAATGTCATCTCCTTCACTTGCGCCGTGTTAGCAATTTATTTTGGTTCAGTACTTAATGCTTTGAGACGTCGAATTGGTGAAGAAGAGAGGGAATTGAAAAAAGCACCCGCGAAGCGTGGGCTGATTCCTCTGTTGATAGCCAAGATAAGGGGGAAGAAGGTGGACCCGCCACCACAAGGATCTTCTCTTACATGTTTGTTGTCAACAAAGCTGGTCCTCAAGGTTGTATTTGTGGCGGTAGTAGCTGTCTCACTTCATTATTTGTCAGACAGTTGAGGATTGATGCCATTGTGTCCAATTTTGAGCAATGTCCAAAACCACGCCT ] [-] EMBL CB637631 [ CCATACAATGTCATCACCTTCACTTGCACCGTTTTAGCACTTTATTTTGGTTCACTACTTAATGCTTTGAGACGACGAATTGGTGCAGAAGAGAGGGAATTGAAAAAAGCAGCCGTGAAGCGTGGGTTGATTCCTCTGTTGATAGCCAAGCTAAGGGGGAAGAAGGTCGACCCACCACCACAAGGATCTTCACCTACATCTCTGTTGTCAACAAAGCTGCTACTCAAGGTTGTATTTGTGGCGGTAGTAGCTGTCTCACTTCATTACTTGTCAAACAGTTGAGGATTGATGCCATTGTGTACAATTTTGAGCAATGTCCAAAACCACGGCTGTAGATTGTATTGATCATTTCGTTTATGTATCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4789#0 ------------------------------------------------------------ consensus_4789#1 TCCTGATGCTAATCAAGGATTTGACATCCCATCAGCTTTGGTAACATTTCCTGAGTTCAA 60 consensus_4789#0 ------------------------------------------------------------ consensus_4789#1 TTCTAGCCGAAGTTATCTTGAAGGTGATACATTATTTGTGTCACCTTTGCTACAAACGTT 120 consensus_4789#0 ------------------------------------------------------------ consensus_4789#1 CAAGGAAGATGGCGTGGTCAAGTCATATACAGAAGTATTGCTTGTTCCCTTGACAACTCC 180 consensus_4789#0 --------------AGTACGTTGTCA-CACTGTCACTATGCNCGTCTTAGCACTTTATTT 45 consensus_4789#1 TGATTTCAGCATGCCATACAATGTCATCTCCTTCACTTGCGCCGTGTTAGCAATTTATTT 240 *** ***** * * ***** *** ****** ******* consensus_4789#0 TGGTTCACTACTTAATGCTTTGAGACGACGAATTGGTGAAGAAGAGAGGGAATTGAAAAA 105 consensus_4789#1 TGGTTCAGTACTTAATGCTTTGAGACGTCGAATTGGTGAAGAAGAGAGGGAATTGAAAAA 300 ******* ******************* ******************************** consensus_4789#0 AGCAGCCGCGAAGCGTGGGCTGATTCCTCTGTTGATANCCAAGCTAAGGGGGAAGAAAGT 165 consensus_4789#1 AGCACCCGCGAAGCGTGGGCTGATTCCTCTGTTGATAGCCAAGATAAGGGGGAAGAAGGT 360 **** ******************************** ***** ************* ** consensus_4789#0 CGACCCACCACCACAAGGATCTTCACCTACATCTCTGTTGTCAACAAANCTGCTACTCCA 225 consensus_4789#1 GGACCCGCCACCACAAGGATCTTCTCTTACATGTTTGTTGTCAACAAAGCTGGTCCTCAA 420 ***** ***************** * ***** * ************* *** * *** * consensus_4789#0 GGTTGTATTTGTGGCGGTAGTANCTGTCTCACTTCNTTACTTGTCNAACAGTTGAAGATT 285 consensus_4789#1 GGTTGTATTTGTGGCGGTAGTAGCTGTCTCACTTCATTATTTGTCAGACAGTTGAGGATT 480 ********************** ************ *** ***** ******** **** consensus_4789#0 GATGCCNTTGTGTTCNATTTTGANCNATGTCCNAAACCACNGCTGTNGATTGTATTGATC 345 consensus_4789#1 GATGCCATTGTGTCCAATTTTGAGCAATGTCCAAAACCACGCCTGTAGATTGTATTGATC 540 ****** ****** * ******* * ****** ******* **** ************* consensus_4789#0 ATTTCNTTTATGTTTCNTATATTATATCCACNGTNGCGCNAGGTGTTGTGCTTTTGCATC 405 consensus_4789#1 ATTTCGTTTATGTATCAA------------------------------------------ 558 ***** ******* ** consensus_4789#0 CNAGCCATCNTGTCTTAACTTCNTCCTGGACTGTTGAAATTGACTTGANATGATACCNTA 465 consensus_4789#1 ------------------------------------------------------------ consensus_4789#0 TCCTCCTTGCATTGTGTNCATCTTTTGCCGCNAGCAATGTTATTCATTTTCCCAAAATTT 525 consensus_4789#1 ------------------------------------------------------------ consensus_4789#0 AANAAAGGAACTGATNTNGGAATNTTCNTCCATGCCTCCAAAAAAAAGGTTACCCACNN 584 consensus_4789#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||