cluster # 4793

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4793 cluster # 4793 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4793#0 length = 570 sequences # 1

consensus_4793#1 length = 507 sequences # 2

consensusID : consensus_4793#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 570
fasta sequence

                              [CCACTTCCCCGCGCCGGCGCCGGACCGCAAATCGATGTGCCACCCTTCTCCCGCGCCAGAAGCTCATCACCGGCGCCCTCCCCCAAGCGCGGGCAAGAAGAAAAAGAAGGGCAATCGCCTTCCCATTCCCCACCCGCGCCTCCGGCCGACACGCCTGACATGTCGCCCGCCGACGCGCCCAGCGGGAGAAGAGGCTCAGACAAAGCCGAGAAGAAGAACGGCGCCACCGCGGCGGCCACGAGTGTTGCGGCCACTGTGGCCTCCGCCCCGCTCTGCTCGCCGCGTCGTTCTTGTGAGCGTCAGGTGTTCGACGTTGAGCTCTCGTTGTTCCCCCTGGGCATGCATGGTGTGATGCAGTCCGGTGTTCGCTTCTGAGCTCGTGGGCTCCATGGATAATCTCATCCTGAAGTTGTGTTCTTCTCTTCCTGGTTGGTAGTACTCGGTAGTTAGATAGGATTTGAATGATTGGGATCCTCAGGTGGAGAACGGTGATTGTGATGCCTATTTTGTTAGAGCTCGGAACCATGTTTTGTTTTTCTCTTGGATTTGTTCTTGTGATTTGTTAAAAAA]

[+] EMBL BI795753             [CCACTTCCCCGCGCCGGCGCCGGACCGCAAATCGATGTGCCACCCTTCTCCCGCGCCAGAAGCTCATCACCGGCGCCCTCCCCCAAGCGCGGGCAAGAAGAAAAAGAAGGGCAATCGCCTTCCCATTCCCCACCCGCGCCTCCGGCCGACACGCCTGACATGTCGCCCGCCGACGCGCCCAGCGGGAGAAGAGGCTCAGACAAAGCCGAGAAGAAGAACGGCGCCACCGCGGCGGCCACGAGTGTTGCGGCCACTGTGGCCTCCGCCCCGCTCTGCTCGCCGCGTCGTTCTTGTGAGCGTCAGGTGTTCGACGTTGAGCTCTCGTTGTTCCCCCTGGGCATGCATGGTGTGATGCAGTCCGGTGTTCGCTTCTGAGCTCGTGGGCTCCATGGATAATCTCATCCTGAAGTTGTGTTCTTCTCTTCCTGGTTGGTAGTACTCGGTAGTTAGATAGGATTTGAATGATTGGGATCCTCAGGTGGAGAACGGTGATTGTGATGCCTATTTTGTTAGAGCTCGGAACCATGTTTTGTTTTTCTCTTGGATTTGTTCTTGTGATTTGTTAAAAAA]




>consensus_4793#0
CCACTTCCCCGCGCCGGCGCCGGACCGCAAATCGATGTGCCACCCTTCTCCCGCGCCAGA
AGCTCATCACCGGCGCCCTCCCCCAAGCGCGGGCAAGAAGAAAAAGAAGGGCAATCGCCT
TCCCATTCCCCACCCGCGCCTCCGGCCGACACGCCTGACATGTCGCCCGCCGACGCGCCC
AGCGGGAGAAGAGGCTCAGACAAAGCCGAGAAGAAGAACGGCGCCACCGCGGCGGCCACG
AGTGTTGCGGCCACTGTGGCCTCCGCCCCGCTCTGCTCGCCGCGTCGTTCTTGTGAGCGT
CAGGTGTTCGACGTTGAGCTCTCGTTGTTCCCCCTGGGCATGCATGGTGTGATGCAGTCC
GGTGTTCGCTTCTGAGCTCGTGGGCTCCATGGATAATCTCATCCTGAAGTTGTGTTCTTC
TCTTCCTGGTTGGTAGTACTCGGTAGTTAGATAGGATTTGAATGATTGGGATCCTCAGGT
GGAGAACGGTGATTGTGATGCCTATTTTGTTAGAGCTCGGAACCATGTTTTGTTTTTCTC
TTGGATTTGTTCTTGTGATTTGTTAAAAAA

consensusID : consensus_4793#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 507
fasta sequence

                              [GCTCCTCGCCGGCGCCNTCCCCCAAGGCGGCGGGCAAGAAGAAAAAGAAGGGCAAGTCGCCTTCCCATTCCCCACCCGCCCTCCGGCCGACACGCCTGACATGTCGCCCGCCGACGCGCCCGCGGGAGAAGAGGCTGCAGACAAAGCCGAGAAGAAGAACGGCGCCACCGCGGCGGCCACGAGCGTTGCGGCCACTGTGGCCTCCGCCGNCCGCTCTGCTCGCCGCGTCGTTCTTGTGAGCGTCAGGTGTTCGACGTTGAGCTCTCGTTGTTCCCCCCTGGGCATGCATGGTGTGATGCAGTCCGGTGTTCGCTTCTGAGCTCGTGGGCTCCATGGATAATCTCATCCTGAAGTTGTGTTCTTCTCTTCCTGGTTGGTAGTACTCGGTAGTTAGATAGGATTTGAATGATTGGATCCTCAGGTGGAGAACGGTGATTGTGATGCCTATTTTGTTAGAGCTCGGAACCATGTTTTGTTTTTCTCTTGGAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU029567             [GCTCCTCGCCGGCGCCNTCCCCCAAGGCGGCGGGCAAGAAGAAAAAGAAGGGCAAGTCGCCTTCCCATTCCCCACCCGCCCTCCGGCCGACACGCCTGACATGTCGCCCGCCGACGCGCCCGCGGGAGAAGAGGCTGCAGACAAAGCCGAGAAGAAGAACGGCGCCACCGCGGCGGCCACGAGCGTTGCGGCCACTGTGGCCTCCGCCGNCCGCTCTGCTCGCCGCGTCGTTCTTGTGAGCGTCAGGTGTTCGACGTTGAGCTCTCGTTGTTCCCCCCTGGGCATGCATGGTGTGATGCAGTCCGGTGTTCGCTTCTGAGCTCGTGGGCTCCATGGATAATCTCATCCTGAAGTTGTGTTCTTCTCTTCCTGGTTGGTAGTACTCGGTAGTTAGATAGGATTTGAATGATTGGATCCTCAGGTGGAGAACGGTGATTGTGATGCCTATTTTGTTAGAGCTCGGAACCATGTTTTGTTTTTCTCTTGGAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU222494             [                                                                                                                                                                                CCACGAGCGTTGCGGCCACTGTGGCCTCCGCCG CCGCTCTGCTCGCCGCGTCGTTCTTGTGAGCGTCAGGTGTTCGACGTTGAGCTCTCGTTGTTCCCCCCTGGGCATGCATGGTGTGATGCAGTCCGGTGTTCGCTTCTGAGCTCGTGGGCTCCATGGATAATCTCATCCTGAAGTTGTGTTCTTCTCTTCCTGGTTGGTAGTACTCGGTAGTTAGATAGGATTTGAATGATTGGATCCTCAGGTGGAGAACGGTGATTGTGATGCCTATTTTGTTAGAGCTCGGAACCATGTTTTGTTTTTCaaaaaa                    ]




>consensus_4793#1
GCTCCTCGCCGGCGCCNTCCCCCAAGGCGGCGGGCAAGAAGAAAAAGAAGGGCAAGTCGC
CTTCCCATTCCCCACCCGCCCTCCGGCCGACACGCCTGACATGTCGCCCGCCGACGCGCC
CGCGGGAGAAGAGGCTGCAGACAAAGCCGAGAAGAAGAACGGCGCCACCGCGGCGGCCAC
GAGCGTTGCGGCCACTGTGGCCTCCGCCGNCCGCTCTGCTCGCCGCGTCGTTCTTGTGAG
CGTCAGGTGTTCGACGTTGAGCTCTCGTTGTTCCCCCCTGGGCATGCATGGTGTGATGCA
GTCCGGTGTTCGCTTCTGAGCTCGTGGGCTCCATGGATAATCTCATCCTGAAGTTGTGTT
CTTCTCTTCCTGGTTGGTAGTACTCGGTAGTTAGATAGGATTTGAATGATTGGATCCTCA
GGTGGAGAACGGTGATTGTGATGCCTATTTTGTTAGAGCTCGGAACCATGTTTTGTTTTT
CTCTTGGAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4793#0      CCACTTCCCCGCGCCGGCGCCGGACCGCAAATCGATGTGCCACCCTTCTCCCGCGCCAGA 60
consensus_4793#1      ------------------------------------------------------------
                                                                                  

consensus_4793#0      AGCTCATCACCGGCGCCCTCCCCCAAGC--GCGGGCAAGAAGAAAAAGAAGGGCAA-TCG 117
consensus_4793#1      -GCTCCTCGCCGGCGCCNTCCCCCAAGGCGGCGGGCAAGAAGAAAAAGAAGGGCAAGTCG 59
                       **** ** ******** *********   ************************** ***

consensus_4793#0      CCTTCCCATTCCCCACCCGCGCCTCCGGCCGACACGCCTGACATGTCGCCCGCCGACGCG 177
consensus_4793#1      CCTTCCCATTCCCCACCCGC-CCTCCGGCCGACACGCCTGACATGTCGCCCGCCGACGCG 118
                      ******************** ***************************************

consensus_4793#0      CCCAGCGGGAGAAGAGGCT-CAGACAAAGCCGAGAAGAAGAACGGCGCCACCGCGGCGGC 236
consensus_4793#1      CCC-GCGGGAGAAGAGGCTGCAGACAAAGCCGAGAAGAAGAACGGCGCCACCGCGGCGGC 177
                      *** *************** ****************************************

consensus_4793#0      CACGAGTGTTGCGGCCACTGTGGCCTCCGCC--CCGCTCTGCTCGCCGCGTCGTTCTTGT 294
consensus_4793#1      CACGAGCGTTGCGGCCACTGTGGCCTCCGCCGNCCGCTCTGCTCGCCGCGTCGTTCTTGT 237
                      ****** ************************  ***************************

consensus_4793#0      GAGCGTCAGGTGTTCGACGTTGAGCTCTCGTTGTTCCCCC-TGGGCATGCATGGTGTGAT 353
consensus_4793#1      GAGCGTCAGGTGTTCGACGTTGAGCTCTCGTTGTTCCCCCCTGGGCATGCATGGTGTGAT 297
                      **************************************** *******************

consensus_4793#0      GCAGTCCGGTGTTCGCTTCTGAGCTCGTGGGCTCCATGGATAATCTCATCCTGAAGTTGT 413
consensus_4793#1      GCAGTCCGGTGTTCGCTTCTGAGCTCGTGGGCTCCATGGATAATCTCATCCTGAAGTTGT 357
                      ************************************************************

consensus_4793#0      GTTCTTCTCTTCCTGGTTGGTAGTACTCGGTAGTTAGATAGGATTTGAATGATTGGGATC 473
consensus_4793#1      GTTCTTCTCTTCCTGGTTGGTAGTACTCGGTAGTTAGATAGGATTTGAATGATTGG-ATC 416
                      ******************************************************** ***

consensus_4793#0      CTCAGGTGGAGAACGGTGATTGTGATGCCTATTTTGTTAGAGCTCGGAACCATGTTTTGT 533
consensus_4793#1      CTCAGGTGGAGAACGGTGATTGTGATGCCTATTTTGTTAGAGCTCGGAACCATGTTTTGT 476
                      ************************************************************

consensus_4793#0      TTTTCTCTTGGATTTGTTCTTGTGATTTGTTAAAAAA 570
consensus_4793#1      TTTTCTCTTGGAA------AAAAAAAAAAAAAAAAAA 507
                      ************            *      ******