Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4802 cluster # 4802       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4802#0 length = 1243 sequences # 3  

consensusID : consensus_4802#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1243
fasta sequence
                              [CTGGACCCCTCGTGATGGACACCCGCCTCCCCCTCCTCCTCCTCCTCGCCGGCGTCGTCGCCGCCGCGGCGCCACTGCTCGCNACCGCCCAGCTCTCCGCCGACTTCTACTCCTCCACCTGCCCCAACGTCGAGAAGGTCGTCTCCACCGTCATCGAGCGCAAGTTCAAGGAGGACCCTACCACCTCCGCCCTCCTCCTCCGCCTCCTCTTCCACGACTGC-TTCGCCAATGGATGCGACGCGTCGATCTTGATCGACCCGCTGTCGAACCAGAGCGCGGAGAAGGAGGCGGGGCCGAACATCTCGGTGAAGGGCTACGACATCATCGACGAGATCAAGACGGAGCTGGAGAAGGAGTGCCCGCAGGTGG--TGTCGTGCGCGGACATCGTGGCGCTCAGCACGCGCGACAGCGTGCGCCTCGCCGGGGGCCCCAACTACGACGTGCCCACCGGCCGCCGCGACTCGCTCGTCTCCAACCGCGAGGAAGGCGACTCGCTCCCCGGCCCGGACATCGCCGTCCCGAAGCTCATGGCGCAGTTCTCCGAGAAGGGGTTCAGCGCCGACGAGATGGTCGTCCTCCTCGCCGGCGGCCACTCCATCGGCAAGGCCAAGTGCTTCTTCATCGAGGTCGACGCGGCGCCCATCGACCCGACCTACCGCTCCAACATCACCGCCTTCTGCGACGGCAAGGACGGCGACAAGGGAGCCGTCCCCCTTGATCCCATCACCCCCGACGTCGTCGACCCCAACTACTTCGAACTCGTCATGGACAAGAAGATGCCGCTCACCATCGACCGCCTCATGGGGATGGACGCAAGAACGAAGCCCATCGTGGAGTCCATGGGTAAAAAGACCGACCAGTTCGACGCCACCTTCGGCAAGGCCATGACGAAGCTCAGCGGCATGAAGGTCATCACCGGCAAGGACGGCGAGATCAGGAAATCGTGCTCCGAGTTCAACAACCCGGTGAACACCGACGACGGCCCGTCCGTCATCCGGATCAGCTCGCTGAACCCCGAGGAGATGATGGGCTCCTTTGCGCCGGCCACCGGGAAGTCCCCCTCCGCCGCCTCGGAGTCCAGGAAGGTGGCACCAGGCGGCGCCATGGAGGAAAGGATGGCGGCCGGTGAGGCGAAGACGGATGCTTCAGGCGGCGCCATGGCGGAAAGGTTGGCGGCCGGTGAGGCGAAGACGGCTGCTGCGGCCTCCGAGGATGAAAACCAAGCGGCAGCTGGTGGCGCCGC]

[+] EMBL AK070875             [CTGGACCCCTCGTGATGGACACCCGCCTCCCCCTCCTCCTCCTCCTCGCCGGCGTCGTCGCCGCCGCGGCGCCACTGCTCGCCACCGCCCAGCTCTCCGCCGACTTCTACTCCTCCACCTGCCCCAACGTCGAGAAGGTCGTCTCCACCGTCATCGAGCGCAAGTTCAAGGAGGACCCTACCACCTCCGCCCTCCTCCTCCGCCTCCTCTTCCACGACTGC TTCGCCAATGGATGCGACGCGTCGATCTTGATCGACCCGCTGTCGAACCAGAGCGCGGAGAAGGAGGCGGGGCCGAACATCTCGGTGAAGGGCTACGACATCATCGACGAGATCAAGACGGAGCTGGAGAAGGAGTGCCCGCAGGTGG  TGTCGTGCGCGGACATCGTGGCGCTCAGCACGCGCGACAGCGTGCGCCTCGCCGGGGGCCCCAACTACGACGTGCCCACCGGCCGCCGCGACTCGCTCGTCTCCAACCGCGAGGAAGGCGACTCGCTCCCCGGCCCGGACATCGCCGTCCCGAAGCTCATGGCGCAGTTCTCCGAGAAGGGGTTCAGCGCCGACGAGATGGTCGTCCTCCTCGCCGGCGGCCACTCCATCGGCAAGGCCAAGTGCTTCTTCATCGAGGTCGACGCGGCGCCCATCGACCCGACCTACCGCTCCAACATCACCGCCTTCTGCGACGGCAAGGACGGCGACAAGGGAGCCGTCCCCCTTGATCCCATCACCCCCGACGTCGTCGACCCCAACTACTTCGAACTCGTCATGGACAAGAAGATGCCGCTCACCATCGACCGCCTCATGGGGATGGACGCAAGAACGAAGCCCATCGTGGAGTCCATGGGTAAAAAGACCGACCAGTTCGACGCCACCTTCGGCAAGGCCATGACGAAGCTCAGCGGCATGAAGGTCATCACCGGCAAGGACGGCGAGATCAGGAAATCGTGCTCCGAGTTCAACAACCCGGTGAACACCGACGACGGCCCGTCCGTCATCCGGATCAGCTCGCTGAACCCCGAGGAGATGATGGGCTCCTTTGCGCCGGCCACCGGGAAGTCCCCCTCCGCCGCCTCGGAGTCCAGGAAGGTGGCACCAGGCGGCGCCATGGAGGAAAGGATGGCGGCCGGTGAGGCGAAGACGGATGCTTCAGGCGGCGCCATGGCGGAAAGGTTGGCGGCCGGTGAGGCGAAGACGGCTGCTGCGGCCTCCGAGGATGAAAACCAAGCGGCAGCTGGTGGCGCCGC]
[+] EMBL C22710               [           tnaATGGACACCCGCNTCCCCCTCCTCCTCCTCCTCGNCGGCNTCGTCGCCGCCGCGGCGNCACTGCTCGCNACCGCCCAGCTCTCCGCCGACTTCTACTCCTCCACCTGCCCCAACGTCGAGAAGGTCGTCTCCACCGTCATCGAGCGCAAGTTCAAGGAGGACCCTACCACCTCCGGCCTCCTNCTCCGANTCCTCTTNCACGACTGCTTTCGCCAATGGATGCNACGNGTCGATCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL C22709               [                        GCCTCCCCCTCCTCCTCCTCCTCGCCGGCGTCGTCGCCGCCGCGG GCCACTGCTCGCNACCGCCCAGCTCTCCGCCGACTTCTACTCCTCCACCTGCCCCAACGTCGAGAAGGTCGTCTCCACCGTNATCGAGCGCAAGTTCAAGGAGGACCCTACCACCTCCGCCCTCCTCCTCCGCCTCCTCTTCCACGACTGC TTCGCCAATGGATGCAACGCGTCGATCTTNATCGACCCGCTGTCGAACCAGAGCGCGGAGAAGGAGGCGGGGCCGAACATCTCGGTGAAGGGCTACGACATCATCGACGAGATCAAGACGGAGCTNGAGAAGGAGTGCCCGNAGTTGGGTTGTCGTGCGCGGACATCGTGGgcgtta                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]


>consensus_4802#0 CTGGACCCCTCGTGATGGACACCCGCCTCCCCCTCCTCCTCCTCCTCGCCGGCGTCGTCG CCGCCGCGGCGCCACTGCTCGCNACCGCCCAGCTCTCCGCCGACTTCTACTCCTCCACCT GCCCCAACGTCGAGAAGGTCGTCTCCACCGTCATCGAGCGCAAGTTCAAGGAGGACCCTA CCACCTCCGCCCTCCTCCTCCGCCTCCTCTTCCACGACTGCTTCGCCAATGGATGCGACG CGTCGATCTTGATCGACCCGCTGTCGAACCAGAGCGCGGAGAAGGAGGCGGGGCCGAACA TCTCGGTGAAGGGCTACGACATCATCGACGAGATCAAGACGGAGCTGGAGAAGGAGTGCC CGCAGGTGGTGTCGTGCGCGGACATCGTGGCGCTCAGCACGCGCGACAGCGTGCGCCTCG CCGGGGGCCCCAACTACGACGTGCCCACCGGCCGCCGCGACTCGCTCGTCTCCAACCGCG AGGAAGGCGACTCGCTCCCCGGCCCGGACATCGCCGTCCCGAAGCTCATGGCGCAGTTCT CCGAGAAGGGGTTCAGCGCCGACGAGATGGTCGTCCTCCTCGCCGGCGGCCACTCCATCG GCAAGGCCAAGTGCTTCTTCATCGAGGTCGACGCGGCGCCCATCGACCCGACCTACCGCT CCAACATCACCGCCTTCTGCGACGGCAAGGACGGCGACAAGGGAGCCGTCCCCCTTGATC CCATCACCCCCGACGTCGTCGACCCCAACTACTTCGAACTCGTCATGGACAAGAAGATGC CGCTCACCATCGACCGCCTCATGGGGATGGACGCAAGAACGAAGCCCATCGTGGAGTCCA TGGGTAAAAAGACCGACCAGTTCGACGCCACCTTCGGCAAGGCCATGACGAAGCTCAGCG GCATGAAGGTCATCACCGGCAAGGACGGCGAGATCAGGAAATCGTGCTCCGAGTTCAACA ACCCGGTGAACACCGACGACGGCCCGTCCGTCATCCGGATCAGCTCGCTGAACCCCGAGG AGATGATGGGCTCCTTTGCGCCGGCCACCGGGAAGTCCCCCTCCGCCGCCTCGGAGTCCA GGAAGGTGGCACCAGGCGGCGCCATGGAGGAAAGGATGGCGGCCGGTGAGGCGAAGACGG ATGCTTCAGGCGGCGCCATGGCGGAAAGGTTGGCGGCCGGTGAGGCGAAGACGGCTGCTG CGGCCTCCGAGGATGAAAACCAAGCGGCAGCTGGTGGCGCCGC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)