cluster # 4803

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Oryza sativa
cluster # 4803 cluster # 4803 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4803#0 length = 368 sequences # 1

consensus_4803#1 length = 127 sequences # 2

consensusID : consensus_4803#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence

                              [GTGCAGCTGATTGACAGACAGATTTATGATAGTTGAGGGTTGCCACTGGGTTGGTGGTGCCTGTGCGTTNAGCTGCGCACACTGCCAGAGTGTTGTGGTTTGCAAATGATTTGGGGTTTGCACAATGCTGGCACAATGCCCCTTTGGTGGTTTGGAAACCTGAATGCGTGACCTTTGGAAACACAGCGCATAAAGCACCTCTGGGGTTGATGATTGTAATTNTTGCAAGTGCCAAATGAGGGTGCTGCTTGGCTGAGGACAGATCCCCTCGCCTAACGCCGTTGCCCTCCTGTGGGCTGGCTACTGGGACAGATGACAATTTCTGAATTTCCCAAACAATATCCAGCTATTTTTTTATACTTCAGTGA]

[+] EMBL BM421625             [GTGCAGCTGATTGACAGACAGATTTATGATAGTTGAGGGTTGCCACTGGGTTGGTGGTGCCTGTGCGTTNAGCTGCGCACACTGCCAGAGTGTTGTGGTTTGCAAATGATTTGGGGTTTGCACAATGCTGGCACAATGCCCCTTTGGTGGTTTGGAAACCTGAATGCGTGACCTTTGGAAACACAGCGCATAAAGCACCTCTGGGGTTGATGATTGTAATTNTTGCAAGTGCCAAATGAGGGTGCTGCTTGGCTGAGGACAGATCCCCTCGCCTAACGCCGTTGCCCTCCTGTGGGCTGGCTACTGGGACAGATGACAATTTCTGAATTTCCCAAACAATATCCAGCTATTTTTTTATACTTCAGTGA]




>consensus_4803#0
GTGCAGCTGATTGACAGACAGATTTATGATAGTTGAGGGTTGCCACTGGGTTGGTGGTGC
CTGTGCGTTNAGCTGCGCACACTGCCAGAGTGTTGTGGTTTGCAAATGATTTGGGGTTTG
CACAATGCTGGCACAATGCCCCTTTGGTGGTTTGGAAACCTGAATGCGTGACCTTTGGAA
ACACAGCGCATAAAGCACCTCTGGGGTTGATGATTGTAATTNTTGCAAGTGCCAAATGAG
GGTGCTGCTTGGCTGAGGACAGATCCCCTCGCCTAACGCCGTTGCCCTCCTGTGGGCTGG
CTACTGGGACAGATGACAATTTCTGAATTTCCCAAACAATATCCAGCTATTTTTTTATAC
TTCAGTGA

consensusID : consensus_4803#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 127
fasta sequence

                              [TTGGCTGAGGACAGATGCCACTCAGGCACTAAGCACGTTGCCCTCCTGTGGCTGGCTACTGGACGATGACAATTTCTGAATTTCCCAAACAAATATACAGCTATTTTTTTATACTTCTCAAAAAAAA]

[+] EMBL BI810410             [TTGGCTGAGGACAGATGCCACTCAGGCACTAAGCACGTTGCCCTCCTGTGGCTGGCTACTGGACGATGACAATTTCTGAATTTCCCAAACAAATATACAGCTATTTTTTTATACTTCTCAAAAAAAA]
[+] EMBL CF310731             [                                      TGCCCTCCTGTGGCTGGCTACTGGACGATGACAATTTCTGAATTTCCC AAC AATATACAGCTATTT                     ]




>consensus_4803#1
TTGGCTGAGGACAGATGCCACTCAGGCACTAAGCACGTTGCCCTCCTGTGGCTGGCTACT
GGACGATGACAATTTCTGAATTTCCCAAACAAATATACAGCTATTTTTTTATACTTCTCA
AAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4803#0      GTGCAGCTGATTGACAGACAGATTTATGATAGTTGAGGGTTGCCACTGGGTTGGTGGTGC 60
consensus_4803#1      ------------------------------------------------------------
                                                                                  

consensus_4803#0      CTGTGCGTTNAGCTGCGCACACTGCCAGAGTGTTGTGGTTTGCAAATGATTTGGGGTTTG 120
consensus_4803#1      ------------------------------------------------------------
                                                                                  

consensus_4803#0      CACAATGCTGGCACAATGCCCCTTTGGTGGTTTGGAAACCTGAATGCGTGACCTTTGGAA 180
consensus_4803#1      ------------------------------------------------------------
                                                                                  

consensus_4803#0      ACACAGCGCATAAAGCACCTCTGGGGTTGATGATTGTAATTNTTGCAAGTGCCAAATGAG 240
consensus_4803#1      ------------------------------------------------------------
                                                                                  

consensus_4803#0      GGTGCTGCTTGGCTGAGGACAGATCCC-CTCGC---CTAACGCCGTTGCCCTCCTGTGGG 296
consensus_4803#1      --------TTGGCTGAGGACAGATGCCACTCAGGCACTAAGCACGTTGCCCTCCTGTGG- 51
                              **************** ** ***     ****   **************** 

consensus_4803#0      CTGGCTACTGGGACAGATGACAATTTCTGAATTTCCCAAACAA-TATCCAGCTATTTTTT 355
consensus_4803#1      CTGGCTACTGGA--CGATGACAATTTCTGAATTTCCCAAACAAATATACAGCTATTTTTT 109
                      ***********    **************************** *** ************

consensus_4803#0      TATACTTCAGTGA----- 368
consensus_4803#1      TATACTTCTCAAAAAAAA 127
                      ********    *