These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4803#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [GTGCAGCTGATTGACAGACAGATTTATGATAGTTGAGGGTTGCCACTGGGTTGGTGGTGCCTGTGCGTTNAGCTGCGCACACTGCCAGAGTGTTGTGGTTTGCAAATGATTTGGGGTTTGCACAATGCTGGCACAATGCCCCTTTGGTGGTTTGGAAACCTGAATGCGTGACCTTTGGAAACACAGCGCATAAAGCACCTCTGGGGTTGATGATTGTAATTNTTGCAAGTGCCAAATGAGGGTGCTGCTTGGCTGAGGACAGATCCCCTCGCCTAACGCCGTTGCCCTCCTGTGGGCTGGCTACTGGGACAGATGACAATTTCTGAATTTCCCAAACAATATCCAGCTATTTTTTTATACTTCAGTGA] [+] EMBL BM421625 [GTGCAGCTGATTGACAGACAGATTTATGATAGTTGAGGGTTGCCACTGGGTTGGTGGTGCCTGTGCGTTNAGCTGCGCACACTGCCAGAGTGTTGTGGTTTGCAAATGATTTGGGGTTTGCACAATGCTGGCACAATGCCCCTTTGGTGGTTTGGAAACCTGAATGCGTGACCTTTGGAAACACAGCGCATAAAGCACCTCTGGGGTTGATGATTGTAATTNTTGCAAGTGCCAAATGAGGGTGCTGCTTGGCTGAGGACAGATCCCCTCGCCTAACGCCGTTGCCCTCCTGTGGGCTGGCTACTGGGACAGATGACAATTTCTGAATTTCCCAAACAATATCCAGCTATTTTTTTATACTTCAGTGA] consensusID : consensus_4803#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 127 fasta sequence [TTGGCTGAGGACAGATGCCACTCAGGCACTAAGCACGTTGCCCTCCTGTGGCTGGCTACTGGACGATGACAATTTCTGAATTTCCCAAACAAATATACAGCTATTTTTTTATACTTCTCAAAAAAAA] [+] EMBL BI810410 [TTGGCTGAGGACAGATGCCACTCAGGCACTAAGCACGTTGCCCTCCTGTGGCTGGCTACTGGACGATGACAATTTCTGAATTTCCCAAACAAATATACAGCTATTTTTTTATACTTCTCAAAAAAAA] [+] EMBL CF310731 [ TGCCCTCCTGTGGCTGGCTACTGGACGATGACAATTTCTGAATTTCCC AAC AATATACAGCTATTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4803#0 GTGCAGCTGATTGACAGACAGATTTATGATAGTTGAGGGTTGCCACTGGGTTGGTGGTGC 60 consensus_4803#1 ------------------------------------------------------------ consensus_4803#0 CTGTGCGTTNAGCTGCGCACACTGCCAGAGTGTTGTGGTTTGCAAATGATTTGGGGTTTG 120 consensus_4803#1 ------------------------------------------------------------ consensus_4803#0 CACAATGCTGGCACAATGCCCCTTTGGTGGTTTGGAAACCTGAATGCGTGACCTTTGGAA 180 consensus_4803#1 ------------------------------------------------------------ consensus_4803#0 ACACAGCGCATAAAGCACCTCTGGGGTTGATGATTGTAATTNTTGCAAGTGCCAAATGAG 240 consensus_4803#1 ------------------------------------------------------------ consensus_4803#0 GGTGCTGCTTGGCTGAGGACAGATCCC-CTCGC---CTAACGCCGTTGCCCTCCTGTGGG 296 consensus_4803#1 --------TTGGCTGAGGACAGATGCCACTCAGGCACTAAGCACGTTGCCCTCCTGTGG- 51 **************** ** *** **** **************** consensus_4803#0 CTGGCTACTGGGACAGATGACAATTTCTGAATTTCCCAAACAA-TATCCAGCTATTTTTT 355 consensus_4803#1 CTGGCTACTGGA--CGATGACAATTTCTGAATTTCCCAAACAAATATACAGCTATTTTTT 109 *********** **************************** *** ************ consensus_4803#0 TATACTTCAGTGA----- 368 consensus_4803#1 TATACTTCTCAAAAAAAA 127 ******** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||