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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4808#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1041 fasta sequence
[ATTCTCAACTGCTCTCCTCTTCCCTCTCTCCCTTGCCGCCGCCGCCTCCCACAAATCCCCTACGGTCACCACCACTCGTTCGGCGTCTTCTCCGATGGTGGACTGGCGGCCGACCTCGAGCTCCCTCGGCCGACCCCGGTGGAGAAGCTGCAGCCGCTATTA-CATCCCTTGCCATCTCCATCGCCGGCTTCCTCGCCATTGCCGGCGCCGCCTCTCTTTTCTGTCGCCACAATCGCCTTCTCCGACCGCCAGGCCACCAGATCCGGCGACCATGGTGGCGTTGAGCAGCTAGGAGCAGCTGGGAGCGCCGGTGAAGCAAGTCAACGATGAGATTGAGGGGATTTTTTTTTTGTTTTCTCTTTTCTATTTTCAATTGAGAGAAGAGCGGAGGAGCGCGCGTGGCAGATCCGTATGAGAGGCCAGCGACGGAGGAGCGTGGTACTGGCCGGCCGGCGGCAGAGGAGCCGGGAACGGCTGGCAGCGATGAGTTTCTAGCTATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAATCCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGGTTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAGATGTGGTGGATCCTTAACTACACTGCGAGCCTCCCAGGCCTCACCACCATGAATTGCCCATCTATGCCCTCCCAACCCAAGCCCCAGCTCGGTAAACCCTCGTAAGAGGGGTTCCTTGTTCTGCACGTGCCCATCGACCACTCCTGCAAACCGTTCTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTTCCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCACCTCATAGGACCATCCTATTTTCGCCTCCATTAACCGGCTTGGTTTTGCTGTGCCTTTTGTTTTGGATGGTGCATTGCATTGTGATTGCAAGGTTGCAGTATTTGCCGAATGAACTGTACTTGAAGTGCTAATTGATTTGCTG]
[+] EMBL AK069676 [ATTCTCAACTGCTCTCCTCTTCCCTCTCTCCCTTGCCGCCGCCGCCTCCCACAAATCCCCTACGGTCACCACCACTCGTTCGGCGTCTTCTCCGATGGTGGACTGGCGGCCGACCTCGAGCTCCCTCGGCCGACCCCGGTGGAGAAGCTGCAGCCGCTATTA CATCCCTTGCCATCTCCATCGCCGGCTTCCTCGCCATTGCCGGCGCCGCCTCTCTTTTCTGTCGCCACAATCGCCTTCTCCGACCGCCAGGCCACCAGATCCGGCGACCATGGTGGCGTTGAGCAGCTAGGAGCAGCTGGGAGCGCCGGTGAAGCAAGTCAACGATGAGATTGAGGGGATTTTTTTTTTGTTTTCTCTTTTCTATTTTCAATTGAGAGAAGAGCGGAGGAGCGCGCGTGGCAGATCCGTATGAGAGGCCAGCGACGGAGGAGCGTGGTACTGGCCGGCCGGCGGCAGAGGAGCCGGGAACGGCTGGCAGCGATGAGTTTCTAGCTATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAATCCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGGTTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAGATGTGGTGGATCCTTAACTACACTGCGAGCCTCCCAGGCCTCACCACCATGAATTGCCCATCTATGCCCTCCCAACCCAAGCCCCAGCTCGGTAAACCCTCGTAAGAGGGGTTCCTTGTTCTGCACGTGCCCATCGACCACTCCTGCAAACCGTTCTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTTCCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCACCTCATAGGACCATCCTATTTTCGCCTCCATTAACCGGCTTGGTTTTGCTGTGCCTTTTGTTTTGGATGGTGCATTGCATTGTGATTGCAAGGTTGCAGTATTTGCCGAATGAACTGTACTTGAAGTGCTAATTGATTTGCTG]
[+] EMBL CF279101 [ CTGCTCTCCTCTTCCCTCTTTTCCTTGCCGCCGCCGCCTCCACCAAATCCCCTACGGTCACCACCACTCGTTCGGCGTCTTCTCCGATGGTGGACTGGCGGCCGACCTCGAGCTCCCTCGGCCGACCCCGGTGGAGAAGCTGCAGCCGCTATTATCATCCCTTGCCATCTCCATCTCCGGCTTCCTCGCCATTGCCTTTTCTGCCTCTCTTTTCTGTCGCCACAATCGCCTTCTCCGACCGCCAGGCCACCAGATCCGGCGACCATGGTGGCGTTGAGCAGCTAGGAGCAGCTGGGAGCGCCGGTGAAGCAAGTCAACGATGAGATTGAGGGGA TTTTTTTTTGTTTTCTCTTTTCTATTTTCAATTGAGAGAAGAGCGGAGGAGCGCGCGTGGCAGATCCGTATGAGAGGCCAGCGACGGAGGAGCGTGGTACTGGCCGGCCGGCGGCAGAGGAGCCGGGAACGGCTGGCAGCGATGAGTTTCTAGCTATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAATCCATCGC ]
consensusID : consensus_4808#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[ATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAATCCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGGTTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAAATGTGGTGGATCCTTAATTACACTGGGAGCCTCCCAGGCCTCACCCCCATGAATTGCCCATTTATGCCCTCCCAACCCAAGCCCCAGCTCGGTAAACCCTCGTAAAAGGGGTTCCTTGTTTTGCACGTGCCCATCGACCACTCCTGCAAACCGTTTTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTTCCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCCCCTCAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF279100 [ATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAATCCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGGTTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAAATGTGGTGGATCCTTAATTACACTGGGAGCCTCCCAGGCCTCACCCCCATGAATTGCCCATTTATGCCCTCCCAACCCAAGCCCCAGCTCGGTAAACCCTCGTAAAAGGGGTTCCTTGTTTTGCACGTGCCCATCGACCACTCCTGCAAACCGTTTTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTTCCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCCCCTCAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4808#0 ATTCTCAACTGCTCTCCTCTTCCCTCTCTCCCTTGCCGCCGCCGCCTCCCACAAATCCCC 60
consensus_4808#1 ------------------------------------------------------------
consensus_4808#0 TACGGTCACCACCACTCGTTCGGCGTCTTCTCCGATGGTGGACTGGCGGCCGACCTCGAG 120
consensus_4808#1 ------------------------------------------------------------
consensus_4808#0 CTCCCTCGGCCGACCCCGGTGGAGAAGCTGCAGCCGCTATTACATCCCTTGCCATCTCCA 180
consensus_4808#1 ------------------------------------------------------------
consensus_4808#0 TCGCCGGCTTCCTCGCCATTGCCGGCGCCGCCTCTCTTTTCTGTCGCCACAATCGCCTTC 240
consensus_4808#1 ------------------------------------------------------------
consensus_4808#0 TCCGACCGCCAGGCCACCAGATCCGGCGACCATGGTGGCGTTGAGCAGCTAGGAGCAGCT 300
consensus_4808#1 ------------------------------------------------------------
consensus_4808#0 GGGAGCGCCGGTGAAGCAAGTCAACGATGAGATTGAGGGGATTTTTTTTTTGTTTTCTCT 360
consensus_4808#1 ------------------------------------------------------------
consensus_4808#0 TTTCTATTTTCAATTGAGAGAAGAGCGGAGGAGCGCGCGTGGCAGATCCGTATGAGAGGC 420
consensus_4808#1 ------------------------------------------------------------
consensus_4808#0 CAGCGACGGAGGAGCGTGGTACTGGCCGGCCGGCGGCAGAGGAGCCGGGAACGGCTGGCA 480
consensus_4808#1 ------------------------------------------------------------
consensus_4808#0 GCGATGAGTTTCTAGCTATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAAT 540
consensus_4808#1 -----------------ATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAAT 43
*******************************************
consensus_4808#0 CCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGG 600
consensus_4808#1 CCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGG 103
************************************************************
consensus_4808#0 TTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAGATGTGGTGGATCC 660
consensus_4808#1 TTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAAATGTGGTGGATCC 163
********************************************** *************
consensus_4808#0 TTAACTACACTGCGAGCCTCCCAGGCCTCACCACCATGAATTGCCCATCTATGCCCTCCC 720
consensus_4808#1 TTAATTACACTGGGAGCCTCCCAGGCCTCACCCCCATGAATTGCCCATTTATGCCCTCCC 223
**** ******* ******************* *************** ***********
consensus_4808#0 AACCCAAGCCCCAGCTCGGTAAACCCTCGTAAGAGGGGTTCCTTGTTCTGCACGTGCCCA 780
consensus_4808#1 AACCCAAGCCCCAGCTCGGTAAACCCTCGTAAAAGGGGTTCCTTGTTTTGCACGTGCCCA 283
******************************** ************** ************
consensus_4808#0 TCGACCACTCCTGCAAACCGTTCTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTT 840
consensus_4808#1 TCGACCACTCCTGCAAACCGTTTTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTT 343
********************** *************************************
consensus_4808#0 CCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCACC 900
consensus_4808#1 CCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCCCC 403
********************************************************* **
consensus_4808#0 TCATAGGACCATCCTATTTTCGCCTCCATTAACCGGCTTGGTTTTGCTGTGCCTTTTGTT 960
consensus_4808#1 TCAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------- 429
*** * * * *
consensus_4808#0 TTGGATGGTGCATTGCATTGTGATTGCAAGGTTGCAGTATTTGCCGAATGAACTGTACTT 1020
consensus_4808#1 ------------------------------------------------------------
consensus_4808#0 GAAGTGCTAATTGATTTGCTG 1041
consensus_4808#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||