cluster # 4816

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Oryza sativa
cluster # 4816 cluster # 4816 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4816#0 length = 929 sequences # 1

consensus_4816#1 length = 320 sequences # 1
consensus_4816#2 length = 286 sequences # 1

consensusID : consensus_4816#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 929
fasta sequence

                              [ATATAGCTGAAGAATTATGAACACATACTGGCCTGCTGCTCTGAGCCTTGAAAATTATCTTCTCCGTGTTGAGCAACCTCCTGTTCATGCTCCCCAAATCCTCCACAGAGTGAGGATCGTCCACAAGCCGGATCGAGAAGCTCGACGGTATCTAAAAGCACAAAAATGCCTTCAAGAACAAGAAGAAGCATCAATGGTGAAACAAGGAGGCCTCATTTCCCTAGTTTTCTGAACCAATGGGGGTCAGTCAGTTCGTACGGAGGCCGGGTAGGAGATCTTGACTTCGTACCACGCGGACGGCCGCGTCCCGTCGAGCCTGTACAGCCGGCTTCCGTGGCGCAGCGGCATCGTCTCACCCATCAGCTCCTCGCCGACGGTGAGGACCCTCCCCTCCTCCAAGCTGCAGGGCAAAACACACACACACGGGGAGGTTGAGAAACAGCACGGTGAGGCAGCGTGGATCGTGGCAGAGGAAGGGGACCGACCTGCTTGCTGAAGAGAGCAGCAGCCTGGAGAGCAGGAGGAGCAGGAGGCAGCGGCGTCGGCGGCATGGTGAGGGGAGGGGATGCGGCGGCGGCGGCGGCGGCATGGCCGCGGGATCTCCTGGTCGCCGGCGTCGTCGATGCGTCGAGGCGGCCGGGAGGCGAAGGGCTCTACTGCCTTTGGATAGTTCGTGGGCTATTCGTGGGCTGGTACGGACAGATTATTTTACTTGGGCCTTATTTGGATAGGCTGAGATCATGGCCCATAGCATATGGATGGGCTGGGTTATGGCGCCTTTCGTGGATCTGCAATTCGGCCTTTTCTGGGCTTAGGGTGCTAACGTCAACTTTTTTTTCTCTCTTTTCATTTTGTCCCATCTCATCTGGACACTCCATTTTCACCCACGGACTTTACTTGTAAATTAGTTTTTCGTTGATGAAAATTCT]

[+] EMBL AK059908             [ATATAGCTGAAGAATTATGAACACATACTGGCCTGCTGCTCTGAGCCTTGAAAATTATCTTCTCCGTGTTGAGCAACCTCCTGTTCATGCTCCCCAAATCCTCCACAGAGTGAGGATCGTCCACAAGCCGGATCGAGAAGCTCGACGGTATCTAAAAGCACAAAAATGCCTTCAAGAACAAGAAGAAGCATCAATGGTGAAACAAGGAGGCCTCATTTCCCTAGTTTTCTGAACCAATGGGGGTCAGTCAGTTCGTACGGAGGCCGGGTAGGAGATCTTGACTTCGTACCACGCGGACGGCCGCGTCCCGTCGAGCCTGTACAGCCGGCTTCCGTGGCGCAGCGGCATCGTCTCACCCATCAGCTCCTCGCCGACGGTGAGGACCCTCCCCTCCTCCAAGCTGCAGGGCAAAACACACACACACGGGGAGGTTGAGAAACAGCACGGTGAGGCAGCGTGGATCGTGGCAGAGGAAGGGGACCGACCTGCTTGCTGAAGAGAGCAGCAGCCTGGAGAGCAGGAGGAGCAGGAGGCAGCGGCGTCGGCGGCATGGTGAGGGGAGGGGATGCGGCGGCGGCGGCGGCGGCATGGCCGCGGGATCTCCTGGTCGCCGGCGTCGTCGATGCGTCGAGGCGGCCGGGAGGCGAAGGGCTCTACTGCCTTTGGATAGTTCGTGGGCTATTCGTGGGCTGGTACGGACAGATTATTTTACTTGGGCCTTATTTGGATAGGCTGAGATCATGGCCCATAGCATATGGATGGGCTGGGTTATGGCGCCTTTCGTGGATCTGCAATTCGGCCTTTTCTGGGCTTAGGGTGCTAACGTCAACTTTTTTTTCTCTCTTTTCATTTTGTCCCATCTCATCTGGACACTCCATTTTCACCCACGGACTTTACTTGTAAATTAGTTTTTCGTTGATGAAAATTCT]




>consensus_4816#0
ATATAGCTGAAGAATTATGAACACATACTGGCCTGCTGCTCTGAGCCTTGAAAATTATCT
TCTCCGTGTTGAGCAACCTCCTGTTCATGCTCCCCAAATCCTCCACAGAGTGAGGATCGT
CCACAAGCCGGATCGAGAAGCTCGACGGTATCTAAAAGCACAAAAATGCCTTCAAGAACA
AGAAGAAGCATCAATGGTGAAACAAGGAGGCCTCATTTCCCTAGTTTTCTGAACCAATGG
GGGTCAGTCAGTTCGTACGGAGGCCGGGTAGGAGATCTTGACTTCGTACCACGCGGACGG
CCGCGTCCCGTCGAGCCTGTACAGCCGGCTTCCGTGGCGCAGCGGCATCGTCTCACCCAT
CAGCTCCTCGCCGACGGTGAGGACCCTCCCCTCCTCCAAGCTGCAGGGCAAAACACACAC
ACACGGGGAGGTTGAGAAACAGCACGGTGAGGCAGCGTGGATCGTGGCAGAGGAAGGGGA
CCGACCTGCTTGCTGAAGAGAGCAGCAGCCTGGAGAGCAGGAGGAGCAGGAGGCAGCGGC
GTCGGCGGCATGGTGAGGGGAGGGGATGCGGCGGCGGCGGCGGCGGCATGGCCGCGGGAT
CTCCTGGTCGCCGGCGTCGTCGATGCGTCGAGGCGGCCGGGAGGCGAAGGGCTCTACTGC
CTTTGGATAGTTCGTGGGCTATTCGTGGGCTGGTACGGACAGATTATTTTACTTGGGCCT
TATTTGGATAGGCTGAGATCATGGCCCATAGCATATGGATGGGCTGGGTTATGGCGCCTT
TCGTGGATCTGCAATTCGGCCTTTTCTGGGCTTAGGGTGCTAACGTCAACTTTTTTTTCT
CTCTTTTCATTTTGTCCCATCTCATCTGGACACTCCATTTTCACCCACGGACTTTACTTG
TAAATTAGTTTTTCGTTGATGAAAATTCT

consensusID : consensus_4816#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 320
fasta sequence

                              [GTTCTGTGGCTTCGTAGTTAAGTAGCTTGTGCAGAGGGAGAAAATAGGGAGCCACAGATGCCAGCGCAATACAGAACAGAGATCCAATTCCAACCCACCAGGCAAAATGTGGGATCCCAAGCATAAGTTCGTCGCAAACAATGTTGAACATCGCAAGCTCTCTCTCCGGCACATTTGGCTTTGCAACTACCCCTTCAGGCTCCACCGTGACAAGAACATAAACTGGCCTGCTGCTCTGAGCCTTGAAAATTATCTTCTCCGTGTTGAGCAACCTCCTGTTCATGCTCCCCAAATCCTCCACAGAGTGAGGATCGTCCACA]

[+] EMBL CF279526             [GTTCTGTGGCTTCGTAGTTAAGTAGCTTGTGCAGAGGGAGAAAATAGGGAGCCACAGATGCCAGCGCAATACAGAACAGAGATCCAATTCCAACCCACCAGGCAAAATGTGGGATCCCAAGCATAAGTTCGTCGCAAACAATGTTGAACATCGCAAGCTCTCTCTCCGGCACATTTGGCTTTGCAACTACCCCTTCAGGCTCCACCGTGACAAGAACATAAACTGGCCTGCTGCTCTGAGCCTTGAAAATTATCTTCTCCGTGTTGAGCAACCTCCTGTTCATGCTCCCCAAATCCTCCACAGAGTGAGGATCGTCCACA]




>consensus_4816#1
GTTCTGTGGCTTCGTAGTTAAGTAGCTTGTGCAGAGGGAGAAAATAGGGAGCCACAGATG
CCAGCGCAATACAGAACAGAGATCCAATTCCAACCCACCAGGCAAAATGTGGGATCCCAA
GCATAAGTTCGTCGCAAACAATGTTGAACATCGCAAGCTCTCTCTCCGGCACATTTGGCT
TTGCAACTACCCCTTCAGGCTCCACCGTGACAAGAACATAAACTGGCCTGCTGCTCTGAG
CCTTGAAAATTATCTTCTCCGTGTTGAGCAACCTCCTGTTCATGCTCCCCAAATCCTCCA
CAGAGTGAGGATCGTCCACA

consensusID : consensus_4816#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence

                              [AGGAGATCTTGGCTTCGTACCACGCGGACGGCCGCGTCCCGTCGAGCCTGTACAGCCGGCTTCCGTGGCGCAGCGGCATCGTCTCGCCCATCAGCTCCTCGCCGACGGTGAGGACCCTCCCCTCCTCCAAGCTGCTTGCTGAAGAGAGCAGCAGCCTGGAGAGCAGGAGGAGCAGGAGGCAGCGGCGTCGGCGGCATGGTGAGGGGAGGGGATGCGGCGGCGGCGGCGGCGGCATGGCCGCGGGATCTCCTGGTCGCCGGCGTCGTCGATGCGTCGAGGCTTTCTA]

[-] EMBL CF279525             [AGGAGATCTTGGCTTCGTACCACGCGGACGGCCGCGTCCCGTCGAGCCTGTACAGCCGGCTTCCGTGGCGCAGCGGCATCGTCTCGCCCATCAGCTCCTCGCCGACGGTGAGGACCCTCCCCTCCTCCAAGCTGCTTGCTGAAGAGAGCAGCAGCCTGGAGAGCAGGAGGAGCAGGAGGCAGCGGCGTCGGCGGCATGGTGAGGGGAGGGGATGCGGCGGCGGCGGCGGCGGCATGGCCGCGGGATCTCCTGGTCGCCGGCGTCGTCGATGCGTCGAGGCTTTCTA]




>consensus_4816#2
AGGAGATCTTGGCTTCGTACCACGCGGACGGCCGCGTCCCGTCGAGCCTGTACAGCCGGC
TTCCGTGGCGCAGCGGCATCGTCTCGCCCATCAGCTCCTCGCCGACGGTGAGGACCCTCC
CCTCCTCCAAGCTGCTTGCTGAAGAGAGCAGCAGCCTGGAGAGCAGGAGGAGCAGGAGGC
AGCGGCGTCGGCGGCATGGTGAGGGGAGGGGATGCGGCGGCGGCGGCGGCGGCATGGCCG
CGGGATCTCCTGGTCGCCGGCGTCGTCGATGCGTCGAGGCTTTCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4816#0      ATATAGCTGAAGAATTATGAACACATACTGGCCTGCTGCTCTGAGCCTTGAAAATTATCT 60
consensus_4816#2      ------------------------------------------------------------
consensus_4816#1      ------------------------------------------------------------
                                                                                  

consensus_4816#0      TCTCCGTGTTGAGCAACCTCCTGTTCATGCTCCCCAAATCCTCCACAGAGTGAGGATCGT 120
consensus_4816#2      ------------------------------------------------------------
consensus_4816#1      ------------------------------------------------------------
                                                                                  

consensus_4816#0      CCACAAGCCGGATCGAGAAGCTCGACGGTATCTAAAAGCACAAAAATGCCTTCAAGAACA 180
consensus_4816#2      ------------------------------------------------------------
consensus_4816#1      ------------------------------------------------------------
                                                                                  

consensus_4816#0      AGAAGAAGCATCAATGGTGAAACAAGGAGGCCTCATTTCCCTAGTTTTCTGAACCAATGG 240
consensus_4816#2      ------------------------------------------------------------
consensus_4816#1      ---------------------------------------------------------GTT 3
                                                                                  

consensus_4816#0      GGGTCAGTCAGTTCGTACGGAGGCCGGGTAGGAGATCTTGACTTCGTACCACGCGGACGG 300
consensus_4816#2      -----------------------------AGGAGATCTTGGCTTCGTACCACGCGGACGG 31
consensus_4816#1      CTGTGGCTTCGTAGTTAAGTAGCTTGTGCAGAGGGAGAAAATAGGGAGCCACAGATGCCA 63
                                                   **  *           *  ****     *  

consensus_4816#0      CCGCGTCCCGTCGAGCCTGTACAG--CCGGCTTCCGTGGCGCAGCGGCATCGTCTCACCC 358
consensus_4816#2      CCGCGTCCCGTCGAGCCTGTACAG--CCGGCTTCCGTGGCGCAGCGGCATCGTCTCGCCC 89
consensus_4816#1      GCGCAATACAGAACAGAGATCCAATTCCAACCCACCAGGCAAAATG-TGGGATCCCAAGC 122
                       ***    *          * **   **  *   *  ***  *  *      ** *   *

consensus_4816#0      ATCAGCTCCTCGCCGACGGTGAGGACCCTCCCCTCCTCCAAGCTGCAGGGCAAAACACAC 418
consensus_4816#2      ATCAGCTCCTCGCCGACGGTGAGGACCCTCCCCTCCTCCAAGCTGC-------------- 135
consensus_4816#1      ATAAGTTCGTCGCAAACAATGTTGAACATCGCAAGCTCTCT-CTCCGGCACA-------- 173
                      ** ** ** ****  **  **  ** * ** *   ***    ** *              

consensus_4816#0      ACACACGGGGAGGTTGAGAAACAGCACGGTGAGGCAGCGTGGATCGTGGCAGAGGAAGGG 478
consensus_4816#2      ------------------------------------------------------------
consensus_4816#1      ------------------------------------------------------------
                                                                                  

consensus_4816#0      GACCGACCTGCTTGCTGAAGAGAGCAGCAGCCTGGAGAGCAGGAGGAGCAGGAGGCAGCG 538
consensus_4816#2      -----------TTGCTGAAGAGAGCAGCAGCCTGGAGAGCAGGAGGAGCAGGAGGCAGCG 184
consensus_4816#1      ----------TTTGGCTTTGCAACTACCCCTTCAGGCTCCACCGTGACAAGAACATAAAC 223
                                 ***     *  *  * *      *    **    **  ** *   *   

consensus_4816#0      GCGTCGGCGGCATGGTGAGGGGAGGGGATGCGGCGGCGGCGGCGGCGGCATGGCCGCGGG 598
consensus_4816#2      GCGTCGGCGGCATGGTGAGGGGAGGGGATGCGGCGGCGGCGGCGGCGGCATGGCCGCGGG 244
consensus_4816#1      TGGCCTGCTGCTC--TGAGCCTTGAAAAT-TATCTTCTCCG--TGTTGAGCAACCTCCTG 278
                        * * ** **    ****    *   **    *  *  **   *  *     ** *  *

consensus_4816#0      ATCTCCTGGTCGCCGGCGTCGTCGATGCGTCGAGGCGGCCGGGAGGCGAAGGGCTCTACT 658
consensus_4816#2      ATCTCCTGGTCGCCGGCGTCGTCGATGCGTCGAGGCTTTCTA------------------ 286
consensus_4816#1      --TTCATGCTCCCCAAATCCTCCACAGAGTGAGGATCGTCCACA---------------- 320
                         ** ** ** **     *  *   * **   *     *                    

consensus_4816#0      GCCTTTGGATAGTTCGTGGGCTATTCGTGGGCTGGTACGGACAGATTATTTTACTTGGGC 718
consensus_4816#2      ------------------------------------------------------------
consensus_4816#1      ------------------------------------------------------------
                                                                                  

consensus_4816#0      CTTATTTGGATAGGCTGAGATCATGGCCCATAGCATATGGATGGGCTGGGTTATGGCGCC 778
consensus_4816#2      ------------------------------------------------------------
consensus_4816#1      ------------------------------------------------------------
                                                                                  

consensus_4816#0      TTTCGTGGATCTGCAATTCGGCCTTTTCTGGGCTTAGGGTGCTAACGTCAACTTTTTTTT 838
consensus_4816#2      ------------------------------------------------------------
consensus_4816#1      ------------------------------------------------------------
                                                                                  

consensus_4816#0      CTCTCTTTTCATTTTGTCCCATCTCATCTGGACACTCCATTTTCACCCACGGACTTTACT 898
consensus_4816#2      ------------------------------------------------------------
consensus_4816#1      ------------------------------------------------------------
                                                                                  

consensus_4816#0      TGTAAATTAGTTTTTCGTTGATGAAAATTCT 929
consensus_4816#2      -------------------------------
consensus_4816#1      -------------------------------