cluster # 4818

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Oryza sativa
cluster # 4818 cluster # 4818 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4818#0 length = 202 sequences # 2

consensus_4818#1 length = 107 sequences # 1

consensusID : consensus_4818#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 202
fasta sequence

                              [TAGTCTTCCTACTTGGTTAAGGGAGAAAGTTTTCACTTCGGCCACCTGGGTTCGAGTCCCACTTTTCTCTCAATTTTGCACCTATTATTACTTCCACTGTGTATAGGCCTCTCTTAAAATAAGTCTACTTTGCCTCCCCCAAGTCAAATTATATTTGCCTTAAAAAAAAAAAATTTTTTTAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF310906             [TAGTCTTCCTACTTGGTTAAGGGAGAAAGTTTTCACTTCGGCCACCTGGGTTCGAGTCCCACTTTT                                                                                                                                        ]
[+] EMBL CF330408             [                          AAGTTTTCACTTCGGCCACCTGGGTTCGAGTCCCACTTTTCTCTCAATTTTGCACCTATTATTACTTCCACTGTGTATAGGCCTCTCTTAAAATAAGTCTACTTTGCCTCCCCCAAGTCAAATTATATTTGCCTTAAAAAAAAAAAATTTTTTTAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4818#0
TAGTCTTCCTACTTGGTTAAGGGAGAAAGTTTTCACTTCGGCCACCTGGGTTCGAGTCCC
ACTTTTCTCTCAATTTTGCACCTATTATTACTTCCACTGTGTATAGGCCTCTCTTAAAAT
AAGTCTACTTTGCCTCCCCCAAGTCAAATTATATTTGCCTTAAAAAAAAAAAATTTTTTT
AAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_4818#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 107
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTGAAAAAAAAGGGGGACTCGAACCCAGGGGGCCGAAGGGAAAACTTTCTCCCTTAACCAAGTGGGAAGACT]

[+] EMBL CF310905             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTGAAAAAAAAGGGGGACTCGAACCCAGGGGGCCGAAGGGAAAACTTTCTCCCTTAACCAAGTGGGAAGACT]




>consensus_4818#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTGAAAAAAAAGGGGGACTCGAACC
CAGGGGGCCGAAGGGAAAACTTTCTCCCTTAACCAAGTGGGAAGACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4818#0      TAGTCTTCCTACTTGGTTAAGGGAGAAAGTTTTCACTTCGGCCACCTGGGTTCGAGTCCC 60
consensus_4818#1      ------------------------------------------------------------
                                                                                  

consensus_4818#0      ACTTTTCTCTCAATTTTGCACCTATTATTACTTCCACTGTGTATAGGCCTCTCTTAAAAT 120
consensus_4818#1      ------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAT 36
                                              ** **  **    * * * *     * * *******

consensus_4818#0      AAGTCTACTTTGCCTCCCCCAAGTCAAATTATATTTGCCTTAAAAAAAAAAAATTTTTTT 180
consensus_4818#1      TGAAAAAAAAGGGGGACTCGAACCCAGGG-------GGCCGAAGGGAAAACTTTCTCCCT 89
                            *    *    * * **  **          * *  **   ****   * *   *

consensus_4818#0      AAAAAAAAAAAAAAAAAAAAAA 202
consensus_4818#1      TAACCAAGTGGGAAGACT---- 107
                       **  **     ** *