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Oryza sativa
cluster # 482 cluster # 482       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_482#0 length = 2104 sequences # 2  

consensusID : consensus_482#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2104
fasta sequence
                              [GAAAAATCGCGCCGCTCTCCGGCGCAAAACTGCAGCGAGGCGAGCTCGCCCTCGCCTCCGGCTACTCCGAGCCGCGCCGCAATGGCCGCCGCGCCGGTGGCCTCCCCATTCCCGGCGCTTCCCTCCTCCTCCTCCTCCACCACCATCGCGGCCTCCACCGCCGCGCGCCGGTGCCACGACGCGCTGCTCCCACCGCCAGCCGCCGCGGGGCGCGAGCCGGCTCGCACCAGGGGATCCTCCTCCTCCTTGGCTGGCGCCGCGGGGGAGAGGAGGAGGCGGCGAGGCGAGGAGGATGGCGGCGAGGTCGAGGCCGAGGCGGAGCGGCGGCGAAAGGAGGAAGTGAACCGTAAGATCGCGTCCCGGAAGGCGCTCTCCGTCATCCTCCGCCGCGAGGCCACCAAGGCCGTCCTCGACAAGCGCAAGCCCGGCAAGGGCACCCGCCGCCTCCTCCCCCGCACCGTCCTCGAGGCCCTCCACGAGCGCATCACCGCCCTCCGCTGGGACTCCGCCCTCAAGGTGTTCGATCTAATGCGCGACCAGGTGTGGTACAGGCCGTACGTCGGGATATACGTCAAGCTGATCACCATGCTGGGCAAGTGCAAGCAGCCGGAGAGGGCGCACGAGCTGTTCCAGGCCATGGTGGACGAAGGCTGCGCTCCCAACCTCGAGTCCTACACGGCCCTCGTCTCCGCGTACAGCAGGAGTGGCCGCTTCGACAGGGCCTTCTCCTTGCTCGAGCAGATGAAGGCCACCCCTGGTTGCCGACCTGATGTGCAGACCTACTCCATTCTCATCAAGTCATGCTTGCACGCCTATGATTTTGAGCGGGTCAAGTATTTGATGGAAGATATGGCGCGGGCGGGTATCCGTCCCAATGTCGTGACTTATAACACATTAATTGATGCCTATGGGAAAGCAGGAAGGTTTGCTGAGATGGAATCAACTCTTCTGGAGATGCTGACTGAAAATTGCAAGCCTGATGTATGGACAATGAATTCTACTCTCAGAGCTTTCGGTGGCAGTGGTCAAATTGAAACTATGGAAAGCTGTTATGAGAAGTTCCAGGCCTCCGGTATCTCCCCAAACATTAAGACTTACAATATTTTACTTGATTCCTATGGTAAAGCTAAAATGTATGAGAAGATGGGAGCTGTGATGGAATACATGCAGAAGTATTACTATTCTTGGACAATAGTCACATACAATGTAGTTATTGATGCATTTGGAAGGGCTGGGGACCTTGAACAGATGGAATATATTTTTAGATTGATGAAATCTGAGCGTATAAAGCCCAACTGTGTTACACTCTGCTCGTTGGTTCGAGCATATGGAAGGGCTGGGGATGTTAAGAAAATAAAGACAGTGTTGAGAATCGTTGAGAATTCTGACATAACGTTGGATATTGTGTTCTTCAACTGTTTGGTGGACGCGTTTGGGAGGGTGGGGTGCTTGGCGGAGATGTGGGATGTTCTTGATATAATGAAATTACAACGATGCAAACCAGACAAGGTAACCTGCACTACCATGATTAAATGGTTTCTCATCAAAGGAATTGATGATCATCGTGTTCAGTACCTACGGGACTTAAAAGACGGGCGATCTAAAGATAACATATAGGCACTAACACTAAGCAGACAATGTCAGAACTTCAGTTTGCAAGATGGAACAACCTGTCAGAACACTAAGCAGACAATGGTGATATTTGTTCTCCGTAATTTTCCAAGAAAGATGGAACAACCTGTAAGAACTCCAGTTAGCAGAGACACATCAATCTTAGCCTGCTCTTTGTAGGTAGCTTCATTGTTACTTATTCAACATGTAATGTACACAACACAACAATGAAAGTTTGTTTTACGATCTTAACAATGGAGCTATTTGACTGCATCTGGCAAAACTGCCTATGGTTATGGCATCCCATAAATGAATTATGTCTTGAGGATCTGAGCAAGATTTTGCTATCCGAGCAAACGGATCAGGACAATGAAATAAAGAAGAAGGCCTTGACGAACAGTGAATCTTAAGTGTCGGTGACCAATCAGTTAGATTGTGCTGTGCTGTTGTGACTTGATGTATGGATCATACAGCTGTACATGATATTCAGTAT]

[+] EMBL AK068738             [GAAAAATCGCGCCGCTCTCCGGCGCAAAACTGCAGCGAGGCGAGCTCGCCCTCGCCTCCGGCTACTCCGAGCCGCGCCGCAATGGCCGCCGCGCCGGTGGCCTCCCCATTCCCGGCGCTTCCCTCCTCCTCCTCCTCCACCACCATCGCGGCCTCCACCGCCGCGCGCCGGTGCCACGACGCGCTGCTCCCACCGCCAGCCGCCGCGGGGCGCGAGCCGGCTCGCACCAGGGGATCCTCCTCCTCCTTGGCTGGCGCCGCGGGGGAGAGGAGGAGGCGGCGAGGCGAGGAGGATGGCGGCGAGGTCGAGGCCGAGGCGGAGCGGCGGCGAAAGGAGGAAGTGAACCGTAAGATCGCGTCCCGGAAGGCGCTCTCCGTCATCCTCCGCCGCGAGGCCACCAAGGCCGTCCTCGACAAGCGCAAGCCCGGCAAGGGCACCCGCCGCCTCCTCCCCCGCACCGTCCTCGAGGCCCTCCACGAGCGCATCACCGCCCTCCGCTGGGACTCCGCCCTCAAGGTGTTCGATCTAATGCGCGACCAGGTGTGGTACAGGCCGTACGTCGGGATATACGTCAAGCTGATCACCATGCTGGGCAAGTGCAAGCAGCCGGAGAGGGCGCACGAGCTGTTCCAGGCCATGGTGGACGAAGGCTGCGCTCCCAACCTCGAGTCCTACACGGCCCTCGTCTCCGCGTACAGCAGGAGTGGCCGCTTCGACAGGGCCTTCTCCTTGCTCGAGCAGATGAAGGCCACCCCTGGTTGCCGACCTGATGTGCAGACCTACTCCATTCTCATCAAGTCATGCTTGCACGCCTATGATTTTGAGCGGGTCAAGTATTTGATGGAAGATATGGCGCGGGCGGGTATCCGTCCCAATGTCGTGACTTATAACACATTAATTGATGCCTATGGGAAAGCAGGAAGGTTTGCTGAGATGGAATCAACTCTTCTGGAGATGCTGACTGAAAATTGCAAGCCTGATGTATGGACAATGAATTCTACTCTCAGAGCTTTCGGTGGCAGTGGTCAAATTGAAACTATGGAAAGCTGTTATGAGAAGTTCCAGGCCTCCGGTATCTCCCCAAACATTAAGACTTACAATATTTTACTTGATTCCTATGGTAAAGCTAAAATGTATGAGAAGATGGGAGCTGTGATGGAATACATGCAGAAGTATTACTATTCTTGGACAATAGTCACATACAATGTAGTTATTGATGCATTTGGAAGGGCTGGGGACCTTGAACAGATGGAATATATTTTTAGATTGATGAAATCTGAGCGTATAAAGCCCAACTGTGTTACACTCTGCTCGTTGGTTCGAGCATATGGAAGGGCTGGGGATGTTAAGAAAATAAAGACAGTGTTGAGAATCGTTGAGAATTCTGACATAACGTTGGATATTGTGTTCTTCAACTGTTTGGTGGACGCGTTTGGGAGGGTGGGGTGCTTGGCGGAGATGTGGGATGTTCTTGATATAATGAAATTACAACGATGCAAACCAGACAAGGTAACCTGCACTACCATGATTAAATGGTTTCTCATCAAAGGAATTGATGATCATCGTGTTCAGTACCTACGGGACTTAAAAGACGGGCGATCTAAAGATAACATATAGGCACTAACACTAAGCAGACAATGTCAGAACTTCAGTTTGCAAGATGGAACAACCTGTCAGAACACTAAGCAGACAATGGTGATATTTGTTCTCCGTAATTTTCCAAGAAAGATGGAACAACCTGTAAGAACTCCAGTTAGCAGAGACACATCAATCTTAGCCTGCTCTTTGTAGGTAGCTTCATTGTTACTTATTCAACATGTAATGTACACAACACAACAATGAAAGTTTGTTTTACGATCTTAACAATGGAGCTATTTGACTGCATCTGGCAAAACTGCCTATGGTTATGGCATCCCATAAATGAATTATGTCTTGAGGATCTGAGCAAGATTTTGCTATCCGAGCAAACGGATCAGGACAATGAAATAAAGAAGAAGGCCTTGACGAACAGTGAATCTTAAGTGTCGGTGACCAATCAGTTAGATTGTGCTGTGCTGTTGTGACTTGATGTATGGATCATACAGCTGTACATGATATTCAGTAT]
[+] EMBL CB640541             [            CGCTCTCCGGCGCAAAACTGCAGCGAGGCGAGCTCGCCCTCGCCTCCGGCTACTCCGAGCCGCGCCGCAATGGCCGCCGCGCCGGTGGCCTCCCCATTCCCGGCGCTTCCCTCCTCCTCCTCCTCCACCACCATCGCGGCCTCCACCGCCGCGCGCCGGTGCCACGACGCGCTGCTCCCACCGCCAGCCGCCGCGGGGCGCGAGCCGGCTCGCACCAGGGGATCCTCCTCCTCCTTGGCTGGCGCCGCGGGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]


>consensus_482#0 GAAAAATCGCGCCGCTCTCCGGCGCAAAACTGCAGCGAGGCGAGCTCGCCCTCGCCTCCG GCTACTCCGAGCCGCGCCGCAATGGCCGCCGCGCCGGTGGCCTCCCCATTCCCGGCGCTT CCCTCCTCCTCCTCCTCCACCACCATCGCGGCCTCCACCGCCGCGCGCCGGTGCCACGAC GCGCTGCTCCCACCGCCAGCCGCCGCGGGGCGCGAGCCGGCTCGCACCAGGGGATCCTCC TCCTCCTTGGCTGGCGCCGCGGGGGAGAGGAGGAGGCGGCGAGGCGAGGAGGATGGCGGC GAGGTCGAGGCCGAGGCGGAGCGGCGGCGAAAGGAGGAAGTGAACCGTAAGATCGCGTCC CGGAAGGCGCTCTCCGTCATCCTCCGCCGCGAGGCCACCAAGGCCGTCCTCGACAAGCGC AAGCCCGGCAAGGGCACCCGCCGCCTCCTCCCCCGCACCGTCCTCGAGGCCCTCCACGAG CGCATCACCGCCCTCCGCTGGGACTCCGCCCTCAAGGTGTTCGATCTAATGCGCGACCAG GTGTGGTACAGGCCGTACGTCGGGATATACGTCAAGCTGATCACCATGCTGGGCAAGTGC AAGCAGCCGGAGAGGGCGCACGAGCTGTTCCAGGCCATGGTGGACGAAGGCTGCGCTCCC AACCTCGAGTCCTACACGGCCCTCGTCTCCGCGTACAGCAGGAGTGGCCGCTTCGACAGG GCCTTCTCCTTGCTCGAGCAGATGAAGGCCACCCCTGGTTGCCGACCTGATGTGCAGACC TACTCCATTCTCATCAAGTCATGCTTGCACGCCTATGATTTTGAGCGGGTCAAGTATTTG ATGGAAGATATGGCGCGGGCGGGTATCCGTCCCAATGTCGTGACTTATAACACATTAATT GATGCCTATGGGAAAGCAGGAAGGTTTGCTGAGATGGAATCAACTCTTCTGGAGATGCTG ACTGAAAATTGCAAGCCTGATGTATGGACAATGAATTCTACTCTCAGAGCTTTCGGTGGC AGTGGTCAAATTGAAACTATGGAAAGCTGTTATGAGAAGTTCCAGGCCTCCGGTATCTCC CCAAACATTAAGACTTACAATATTTTACTTGATTCCTATGGTAAAGCTAAAATGTATGAG AAGATGGGAGCTGTGATGGAATACATGCAGAAGTATTACTATTCTTGGACAATAGTCACA TACAATGTAGTTATTGATGCATTTGGAAGGGCTGGGGACCTTGAACAGATGGAATATATT TTTAGATTGATGAAATCTGAGCGTATAAAGCCCAACTGTGTTACACTCTGCTCGTTGGTT CGAGCATATGGAAGGGCTGGGGATGTTAAGAAAATAAAGACAGTGTTGAGAATCGTTGAG AATTCTGACATAACGTTGGATATTGTGTTCTTCAACTGTTTGGTGGACGCGTTTGGGAGG GTGGGGTGCTTGGCGGAGATGTGGGATGTTCTTGATATAATGAAATTACAACGATGCAAA CCAGACAAGGTAACCTGCACTACCATGATTAAATGGTTTCTCATCAAAGGAATTGATGAT CATCGTGTTCAGTACCTACGGGACTTAAAAGACGGGCGATCTAAAGATAACATATAGGCA CTAACACTAAGCAGACAATGTCAGAACTTCAGTTTGCAAGATGGAACAACCTGTCAGAAC ACTAAGCAGACAATGGTGATATTTGTTCTCCGTAATTTTCCAAGAAAGATGGAACAACCT GTAAGAACTCCAGTTAGCAGAGACACATCAATCTTAGCCTGCTCTTTGTAGGTAGCTTCA TTGTTACTTATTCAACATGTAATGTACACAACACAACAATGAAAGTTTGTTTTACGATCT TAACAATGGAGCTATTTGACTGCATCTGGCAAAACTGCCTATGGTTATGGCATCCCATAA ATGAATTATGTCTTGAGGATCTGAGCAAGATTTTGCTATCCGAGCAAACGGATCAGGACA ATGAAATAAAGAAGAAGGCCTTGACGAACAGTGAATCTTAAGTGTCGGTGACCAATCAGT TAGATTGTGCTGTGCTGTTGTGACTTGATGTATGGATCATACAGCTGTACATGATATTCA GTAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)