cluster # 4830

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4830 cluster # 4830 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4830#0 length = 532 sequences # 2

consensus_4830#1 length = 298 sequences # 1

consensusID : consensus_4830#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 532
fasta sequence

                              [GAAATTGACACAAATAGCATGACCATAGTCAAT-CCTCAACTATCTCAAGTCCATTCGCTTCGTTTTCTTTCAGTGCCACTGCTTCTTTTGATGTACAGAGTCCATCAAGGATAGAGGTCCAATTCAAAGAGGGAAGCTTTCAGCCACCGAAGATATCATCATCGGTAGACCTACCTGCAGAGGTTGATATATTTGG-GCAGAAGATCAGCTTGGGCCCAGTCCAGCAGGTGCTGAACCCTCTGCAGCAAGCCTTTGCAAGTATTGCAGGATCCA-TTTCTGGGCAGCCACCCCTCAAGTTACCCATCCCTGGCAACAACAGGGCCCGGTCTTGGCTGCTGACGACCTACCTAGA-CAAGGACCTCAGGATCTCCA-GAGGTGATGGAGGTCTCTTCATTCTTGTCAAAGAGGGTAGCCCTCTACTAGATCAATTATAGATATAATATCATGTAACAGATTACTACGATAAAGCTACACATCATTTACCCCCCCCTGAAAAATACACTAGCAGCTGCTTAGT-ACAGTAAAAAAAAAA]

[+] EMBL BI810203             [GAAATTGACACAAATAGCATGACCATAGTCAAT CCTCAACTATCTCAAGTCCATTCGCTTCGTTTTCTTTCAGTGCCACTGCTTCTTTTGATGTACAGAGTCCATCAAGGATAGAGGTCCAATTCAAAGAGGGAAGCTTTCAGCCACCGAAGATATCATCATCGGTAGACCTACCTGCAGAGGTTGATATATTTGG GCAGAAGATCAGCTTGGGCCCAGTCCAGCAGGTGCTGAACCCTCTGCAGCAAGCCTTTGCAAGTATTGCAGGATCCA TTTCTGGGCAGCCACCCCTCAAGTTACCCATCCCTGGCAACAACAGGGCCCGGTCTTGGCTGCTGACGACCTACCTAGA CAAGGACCTCAGGATCTCCA GAGGTGATGGAGGTCTCTTCATTCTTGTCAAAGAGGGTAGCCCTCTACTAGATCAATTATAGATATAATATCATGTAACAGATTACTACGATAAAGCTACACATCATTTACCCCCCCCTGAAAAATACACTAGCAGCTGCTTAGT ACAGTAAAAAAAA  ]
[+] EMBL BI807855             [                          AGTCAATGCCTCAACTATCTCAAGTCCATTCGCTTCGTTTTCTTTCAGTGCCCCTGCTTCTTTTGATGTACAGAGTCCATCAAGGATAGAGGTCCCATTCAAAGAGGGAAGCTTTCA CCCCCGAAGATATCATCATCGGTAGACCTACCTGCAGAGGTTGATATATTTGGCGCAGAAGATCAGCTTGGGCCCAGTCCAGCAGGTGCTGAACCCTCTGCAGCAAGCCTTTGCAAGTATTGCAGGATCCACTTTCT GGCAGCCACCCCTCAAGTTACCCATCCCTGGCAACAACAGGGCCCGGTCTTGGCTGCTGACGACCTACCTAGACCCAGGACCTCAGGATCTCCACGAGGTGATGGAGGTCTCTTCATTCTTGTCAAAGAGGGTAGCCCTCTACTAGATCAATTATAGATATAATATCATGTAACAGATTACTACGATAAAGCTACACATCATTTA CCCCCCCTGAAAAATACCCTACCA CTGCTTAGTCCCAGTAAAAAAAAAA]




>consensus_4830#0
GAAATTGACACAAATAGCATGACCATAGTCAATCCTCAACTATCTCAAGTCCATTCGCTT
CGTTTTCTTTCAGTGCCACTGCTTCTTTTGATGTACAGAGTCCATCAAGGATAGAGGTCC
AATTCAAAGAGGGAAGCTTTCAGCCACCGAAGATATCATCATCGGTAGACCTACCTGCAG
AGGTTGATATATTTGGGCAGAAGATCAGCTTGGGCCCAGTCCAGCAGGTGCTGAACCCTC
TGCAGCAAGCCTTTGCAAGTATTGCAGGATCCATTTCTGGGCAGCCACCCCTCAAGTTAC
CCATCCCTGGCAACAACAGGGCCCGGTCTTGGCTGCTGACGACCTACCTAGACAAGGACC
TCAGGATCTCCAGAGGTGATGGAGGTCTCTTCATTCTTGTCAAAGAGGGTAGCCCTCTAC
TAGATCAATTATAGATATAATATCATGTAACAGATTACTACGATAAAGCTACACATCATT
TACCCCCCCCTGAAAAATACACTAGCAGCTGCTTAGTACAGTAAAAAAAAAA

consensusID : consensus_4830#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence

                              [GGGCCCAGTCCAGCNGGTGCTGAACCCTCTGCAGCAAGCCTTTGCAAGTATTGCNGGATCCATTTCTGGGCAGCCACCCCTCAAGTTACCCATCCCTGGCAACAACAGGGCCCGGTCTTGGCTGCTGACGACCTACCTAGACAAGGNCCTCAGGATCTCCAGAGGTGATGGAGGTCTCTTCATTCTTGTCAAAGAGGGTAGCCCTCTACTAGATCAATTATAGATATAATATCATGTAACAGATTACTACGATAAAGCTACACATNNTTTACCCAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU029625             [GGGCCCAGTCCAGCNGGTGCTGAACCCTCTGCAGCAAGCCTTTGCAAGTATTGCNGGATCCATTTCTGGGCAGCCACCCCTCAAGTTACCCATCCCTGGCAACAACAGGGCCCGGTCTTGGCTGCTGACGACCTACCTAGACAAGGNCCTCAGGATCTCCAGAGGTGATGGAGGTCTCTTCATTCTTGTCAAAGAGGGTAGCCCTCTACTAGATCAATTATAGATATAATATCATGTAACAGATTACTACGATAAAGCTACACATNNTTTACCCAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4830#1
GGGCCCAGTCCAGCNGGTGCTGAACCCTCTGCAGCAAGCCTTTGCAAGTATTGCNGGATC
CATTTCTGGGCAGCCACCCCTCAAGTTACCCATCCCTGGCAACAACAGGGCCCGGTCTTG
GCTGCTGACGACCTACCTAGACAAGGNCCTCAGGATCTCCAGAGGTGATGGAGGTCTCTT
CATTCTTGTCAAAGAGGGTAGCCCTCTACTAGATCAATTATAGATATAATATCATGTAAC
AGATTACTACGATAAAGCTACACATNNTTTACCCAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4830#0      GAAATTGACACAAATAGCATGACCATAGTCAATCCTCAACTATCTCAAGTCCATTCGCTT 60
consensus_4830#1      ------------------------------------------------------------
                                                                                  

consensus_4830#0      CGTTTTCTTTCAGTGCCACTGCTTCTTTTGATGTACAGAGTCCATCAAGGATAGAGGTCC 120
consensus_4830#1      ------------------------------------------------------------
                                                                                  

consensus_4830#0      AATTCAAAGAGGGAAGCTTTCAGCCACCGAAGATATCATCATCGGTAGACCTACCTGCAG 180
consensus_4830#1      ------------------------------------------------------------
                                                                                  

consensus_4830#0      AGGTTGATATATTTGGGCAGAAGATCAGCTTGGGCCCAGTCCAGCAGGTGCTGAACCCTC 240
consensus_4830#1      -------------------------------GGGCCCAGTCCAGCNGGTGCTGAACCCTC 29
                                                     ************** **************

consensus_4830#0      TGCAGCAAGCCTTTGCAAGTATTGCAGGATCCATTTCTGGGCAGCCACCCCTCAAGTTAC 300
consensus_4830#1      TGCAGCAAGCCTTTGCAAGTATTGCNGGATCCATTTCTGGGCAGCCACCCCTCAAGTTAC 89
                      ************************* **********************************

consensus_4830#0      CCATCCCTGGCAACAACAGGGCCCGGTCTTGGCTGCTGACGACCTACCTAGACAAGGACC 360
consensus_4830#1      CCATCCCTGGCAACAACAGGGCCCGGTCTTGGCTGCTGACGACCTACCTAGACAAGGNCC 149
                      ********************************************************* **

consensus_4830#0      TCAGGATCTCCAGAGGTGATGGAGGTCTCTTCATTCTTGTCAAAGAGGGTAGCCCTCTAC 420
consensus_4830#1      TCAGGATCTCCAGAGGTGATGGAGGTCTCTTCATTCTTGTCAAAGAGGGTAGCCCTCTAC 209
                      ************************************************************

consensus_4830#0      TAGATCAATTATAGATATAATATCATGTAACAGATTACTACGATAAAGCTACACATCATT 480
consensus_4830#1      TAGATCAATTATAGATATAATATCATGTAACAGATTACTACGATAAAGCTACACATNNTT 269
                      ********************************************************  **

consensus_4830#0      TACCCCCCCCTGAAAAATACACTAGCAGCTGCTTAGTACAGTAAAAAAAAAA 532
consensus_4830#1      TACCCAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 298
                      *****       ***** * *  *  *