These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1314 fasta sequence [GGCACACACCCTGCCCCGTCCTCTCCTCCCCCTTCCCCCCACCTCGACGAACCGACGGTTTCCCCGGCCATGGCTGCTCCGCCGCCGCGGCGAACCCCGAACCCCGAGCGCGGCAGCAGGAGGAAGGTGAGAGCACCGCCGCTCGCCGGACTTACTGCTCCCGATCCCTAACCCCGCTCGTCTCTCTGCTCTCGCAGGGCGAGGACCCGTGGCTCGCGGCGAGCCTTCGCCCGGGGAATTTCCTCCCGGGGCTCGCGATTGGGTTCCTCCTCGGCCTACTCGTCGACTTGACCTCCTCATGGAGGCCCCAATCGAGTCCACCGCTGGCTCCGGCTGCCCCGGCGCCGCGGGGCTCCAAGCGGACGGGTGGTTCGTCGTCCGCTGGCGGGGGCATCGGCGGCGAAGAGCTTAAGATGGTTTTGGTCGTGCGTAAGGACCTCAAGATGCGGGCTGGAAAAATAGCTTCTCAATGTGCTCATGCAGCAACTGGTCTGTATGCAGAACTGATGGCAAGGTGCTAACGCGGTTTGCAATTTTTCTCACTTAGCAACCGGGGTCTTTTGAGACAGTGGGAGCAATTTGGACAAGCTAAGATTGTTTTAACATGCAAGAATCAGCAGGAAATGAATAGGATTAAGGAAACCGCAGAACATCGAGGTATCCCAACATTTGTTGTCGCTGATGCAGGACGAACACAGGTACAAGCTGGGTCTAAGACAGTTCTTGCAGTAGGGCCAGGGAGGAAAGCAGACATAGATTCAGTTACTGGGAAGTTGTCTTTACTATGAACTGCATCTCAGACATGACACACTGATTCCTTCAAAGATTCAAACCAATTGTCGGGTTCAGTTGACGGTGGTATCTTATGCTTGTAGTCCCACAACAGGAGGTCAGAATCCTTGGGATGCTTTACCCAGTTCTCAGGCTAACTCTGAAGCAATTCTTCAAGATCCAGTTCTAGAGTGGCTGATTCAAAATTGCCGTTGGTTGTAATCTTTTCCTCCACATGTCATTGTAGTCTACCCACATGTTAGCGCATTCCAGCGAGTGGATTTTACTTTGGGACAATGAACAAGTATCTGTAGTTTCGAAGTAGTAGGTTATCACCTTCCTCAAAGTAACGGATCATATGTACCGTATGTCCAGAGGAAGCACAAAATGCGTAGAGGTGACTTGTCTTGTCAAACATCCTTGGTGTGAAGCCTCTTGCTGTGAAAGTTCTGTATTCCCAAGTTCCCAACTAGTCCATATCTACTGGGAATTGAATCTCTTTCTTGCAGAGCTGGAACTTTGTGCACTAGTTCCAACAAAATT] [+] EMBL AK099433 [GGCACACACCCTGCCCCGTCCTCTCCTCCCCCTTCCCCCCACCTCGACGAACCGACGGTTTCCCCGGCCATGGCTGCTCCGCCGCCGCGGCGAACCCCGAACCCCGAGCGCGGCAGCAGGAGGAAGGTGAGAGCACCGCCGCTCGCCGGACTTACTGCTCCCGATCCCTAACCCCGCTCGTCTCTCTGCTCTCGCAGGGCGAGGACCCGTGGCTCGCGGCGAGCCTTCGCCCGGGGAATTTCCTCCCGGGGCTCGCGATTGGGTTCCTCCTCGGCCTACTCGTCGACTTGACCTCCTCATGGAGGCCCCAATCGAGTCCACCGCTGGCTCCGGCTGCCCCGGCGCCGCGGGGCTCCAAGCGGACGGGTGGTTCGTCGTCCGCTGGCGGGGGCATCGGCGGCGAAGAGCTTAAGATGGTTTTGGTCGTGCGTAAGGACCTCAAGATGCGGGCTGGAAAAATAGCTTCTCAATGTGCTCATGCAGCAACTGGTCTGTATGCAGAACTGATGGCAAGGTGCTAACGCGGTTTGCAATTTTTCTCACTTAGCAACCGGGGTCTTTTGAGACAGTGGGAGCAATTTGGACAAGCTAAGATTGTTTTAACATGCAAGAATCAGCAGGAAATGAATAGGATTAAGGAAACCGCAGAACATCGAGGTATCCCAACATTTGTTGTCGCTGATGCAGGACGAACACAGGTACAAGCTGGGTCTAAGACAGTTCTTGCAGTAGGGCCAGGGAGGAAAGCAGACATAGATTCAGTTACTGGGAAGTTGTCTTTACTATGAACTGCATCTCAGACATGACACACTGATTCCTTCAAAGATTCAAACCAATTGTCGGGTTCAGTTGACGGTGGTATCTTATGCTTGTAGTCCCACAACAGGAGGTCAGAATCCTTGGGATGCTTTACCCAGTTCTCAGGCTAACTCTGAAGCAATTCTTCAAGATCCAGTTCTAGAGTGGCTGATTCAAAATTGCCGTTGGTTGTAATCTTTTCCTCCACATGTCATTGTAGTCTACCCACATGTTAGCGCATTCCAGCGAGTGGATTTTACTTTGGGACAATGAACAAGTATCTGTAGTTTCGAAGTAGTAGGTTATCACCTTCCTCAAAGTAACGGATCATATGTACCGTATGTCCAGAGGAAGCACAAAATGCGTAGAGGTGACTTGTCTTGTCAAACATCCTTGGTGTGAAGCCTCTTGCTGTGAAAGTTCTGTATTCCCAAGTTCCCAACTAGTCCATATCTACTGGGAATTGAATCTCTTTCTTGCAGAGCTGGAACTTTGTGCACTAGTTCCAACAAAATT] consensusID : consensus_4834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1247 fasta sequence [CTTCCCCCCACCTCGACGAACCGACGGTTTCCCCGGCCATGGCTGCTCCGCCGCCGCGGCGAACCCCGAACCCCGAGCGCGGCAGCAGGAGGAAGGGCGAGGACCCGTGGCTCGCGGCGAGCCTTCGCCCGGGGAATTTCCTCCCGGGGCTCGCGATTGGGTTCCTCCTCGGCCTACTCGTCGACTTGACCTCCTCATGGAGGCCCCAATCGAGTCCACCGCTGGCTCCGGCTGCCCCGGCGCCGCGGGGCTCCAAGCGGACGGGTGGTTCGTCGTCCGCTGGCGGGGGCATCGGCGGCGAAGAGCTTAAGATGGTTTTGGTCGTGCGTAAGGACCTCAAGATGCGGGCTGGAAAAATAGCTTCTCAATGTGCTCATGCAGCAACTGGTCTGTATGCAGAACTGATGGCAAGCAACCGGGGTCTTTTGAGACAGTGGGAGCAATTTGGACAAGCTAAGATTGTTTTAACATGCAAGAATCAGCAGGTAATGAATAGGATTAAGGAAACCGCAGAACATCGAGGTATCCCAACATTTGTTGTCGCTGATGCAGGACGAACACAGGTACAAGCTGGGTCTAAGACAGTTCTTGCAGTAGGGCCAGGGAGGAAAGCAGACATAGATTCAGTTACTGGGAAGTTGTCTTTACTATGAACTGCATCTCAGACATGACACACTGATTCCTTCAAAGATTCAAACCAATTGTCGGGTTCAGTTGACGGTGGTATCTTATGCTTGTAGTCCCACAACAGGAGGTCAGAATCCTTGGGATGCTTTACCCAGTTCTCAGGCTAACTCTGAAGCAATTCTTCAAGATCCAGTTCTAGAGTGGCTGATTCAAAATTGCCGTTGGTTGTAATCTTTTCCTCCACATGTCATTGTAGTCTACCCACATGTTAGCGCATTCCAGCGAGTGGATTTTACTTTGGGACAATGAACAAGTATCTGTAGTTTCGAAGTAGTAGGTTATCACCTTCCTCAAAGTAACGGATCATATGTACCGTATGTCCAGAGGAAGCACAAAATGCGTAGAGGTGACTTGTCTTGTCAAACATCCTTGGTGTGAAGCCTCTTGCTGTGAAAGTTCTGTATTCCCAAGTTCCCAACTAGTCCATATCTACTGGGAATTGAATCTCTTTCTTGCAGAGCTGGAACTTTGTGCACTAGTTCCAACAAAATTAGATTCTTGCAAATATGGAAATATTGTATTGTAGGAGTAGTTCCACAAAGTTCCGATGAAATTTCTCG] [+] EMBL AK061451 [CTTCCCCCCACCTCGACGAACCGACGGTTTCCCCGGCCATGGCTGCTCCGCCGCCGCGGCGAACCCCGAACCCCGAGCGCGGCAGCAGGAGGAAGGGCGAGGACCCGTGGCTCGCGGCGAGCCTTCGCCCGGGGAATTTCCTCCCGGGGCTCGCGATTGGGTTCCTCCTCGGCCTACTCGTCGACTTGACCTCCTCATGGAGGCCCCAATCGAGTCCACCGCTGGCTCCGGCTGCCCCGGCGCCGCGGGGCTCCAAGCGGACGGGTGGTTCGTCGTCCGCTGGCGGGGGCATCGGCGGCGAAGAGCTTAAGATGGTTTTGGTCGTGCGTAAGGACCTCAAGATGCGGGCTGGAAAAATAGCTTCTCAATGTGCTCATGCAGCAACTGGTCTGTATGCAGAACTGATGGCAAGCAACCGGGGTCTTTTGAGACAGTGGGAGCAATTTGGACAAGCTAAGATTGTTTTAACATGCAAGAATCAGCAGGTAATGAATAGGATTAAGGAAACCGCAGAACATCGAGGTATCCCAACATTTGTTGTCGCTGATGCAGGACGAACACAGGTACAAGCTGGGTCTAAGACAGTTCTTGCAGTAGGGCCAGGGAGGAAAGCAGACATAGATTCAGTTACTGGGAAGTTGTCTTTACTATGAACTGCATCTCAGACATGACACACTGATTCCTTCAAAGATTCAAACCAATTGTCGGGTTCAGTTGACGGTGGTATCTTATGCTTGTAGTCCCACAACAGGAGGTCAGAATCCTTGGGATGCTTTACCCAGTTCTCAGGCTAACTCTGAAGCAATTCTTCAAGATCCAGTTCTAGAGTGGCTGATTCAAAATTGCCGTTGGTTGTAATCTTTTCCTCCACATGTCATTGTAGTCTACCCACATGTTAGCGCATTCCAGCGAGTGGATTTTACTTTGGGACAATGAACAAGTATCTGTAGTTTCGAAGTAGTAGGTTATCACCTTCCTCAAAGTAACGGATCATATGTACCGTATGTCCAGAGGAAGCACAAAATGCGTAGAGGTGACTTGTCTTGTCAAACATCCTTGGTGTGAAGCCTCTTGCTGTGAAAGTTCTGTATTCCCAAGTTCCCAACTAGTCCATATCTACTGGGAATTGAATCTCTTTCTTGCAGAGCTGGAACTTTGTGCACTAGTTCCAACAAAATTAGATTCTTGCAAATATGGAAATATTGTATTGTAGGAGTAGTTCCACAAAGTTCCGATGAAATTTCTCG] consensusID : consensus_4834#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence [GTTGGTTGTAATCTTTTCCTCCACATGTCATTGTAGTCTACCCACATGTTAGCGCATTCCAGCGAGTGGATTTTACTTTGGGACCATGAACCAGTATCTGTAGTTTCGAAGTAGTAGGTTATCACCTTCCTCAAGTAACGGATCATATGTACCGTATGTCCACGAGGAAGCACCAAATGCGTAGAGGTGACTTGTCTTGTCAAACCAAAAAAAAAA] [+] EMBL BI805047 [GTTGGTTGTAATCTTTTCCTCCACATGTCATTGTAGTCTACCCACATGTTAGCGCATTCCAGCGAGTGGATTTTACTTTGGGACCATGAACCAGTATCTGTAGTTTCGAAGTAGTAGGTTATCACCTTCCTCAAGTAACGGATCATATGTACCGTATGTCCACGAGGAAGCACCAAATGCGTAGAGGTGACTTGTCTTGTCAAACCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4834#0 GGCACACACCCTGCCCCGTCCTCTCCTCCCCCTTCCCCCCACCTCGACGAACCGACGGTT 60 consensus_4834#1 -------------------------------CTTCCCCCCACCTCGACGAACCGACGGTT 29 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 TCCCCGGCCATGGCTGCTCCGCCGCCGCGGCGAACCCCGAACCCCGAGCGCGGCAGCAGG 120 consensus_4834#1 TCCCCGGCCATGGCTGCTCCGCCGCCGCGGCGAACCCCGAACCCCGAGCGCGGCAGCAGG 89 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 AGGAAGGTGAGAGCACCGCCGCTCGCCGGACTTACTGCTCCCGATCCCTAACCCCGCTCG 180 consensus_4834#1 AGGAAGG----------------------------------------------------- 96 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 TCTCTCTGCTCTCGCAGGGCGAGGACCCGTGGCTCGCGGCGAGCCTTCGCCCGGGGAATT 240 consensus_4834#1 ------------------GCGAGGACCCGTGGCTCGCGGCGAGCCTTCGCCCGGGGAATT 138 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 TCCTCCCGGGGCTCGCGATTGGGTTCCTCCTCGGCCTACTCGTCGACTTGACCTCCTCAT 300 consensus_4834#1 TCCTCCCGGGGCTCGCGATTGGGTTCCTCCTCGGCCTACTCGTCGACTTGACCTCCTCAT 198 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 GGAGGCCCCAATCGAGTCCACCGCTGGCTCCGGCTGCCCCGGCGCCGCGGGGCTCCAAGC 360 consensus_4834#1 GGAGGCCCCAATCGAGTCCACCGCTGGCTCCGGCTGCCCCGGCGCCGCGGGGCTCCAAGC 258 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 GGACGGGTGGTTCGTCGTCCGCTGGCGGGGGCATCGGCGGCGAAGAGCTTAAGATGGTTT 420 consensus_4834#1 GGACGGGTGGTTCGTCGTCCGCTGGCGGGGGCATCGGCGGCGAAGAGCTTAAGATGGTTT 318 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 TGGTCGTGCGTAAGGACCTCAAGATGCGGGCTGGAAAAATAGCTTCTCAATGTGCTCATG 480 consensus_4834#1 TGGTCGTGCGTAAGGACCTCAAGATGCGGGCTGGAAAAATAGCTTCTCAATGTGCTCATG 378 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 CAGCAACTGGTCTGTATGCAGAACTGATGGCAAGGTGCTAACGCGGTTTGCAATTTTTCT 540 consensus_4834#1 CAGCAACTGGTCTGTATGCAGAACTGATGGCAAG-------------------------- 412 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 CACTTAGCAACCGGGGTCTTTTGAGACAGTGGGAGCAATTTGGACAAGCTAAGATTGTTT 600 consensus_4834#1 -------CAACCGGGGTCTTTTGAGACAGTGGGAGCAATTTGGACAAGCTAAGATTGTTT 465 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 TAACATGCAAGAATCAGCAGGAAATGAATAGGATTAAGGAAACCGCAGAACATCGAGGTA 660 consensus_4834#1 TAACATGCAAGAATCAGCAGGTAATGAATAGGATTAAGGAAACCGCAGAACATCGAGGTA 525 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 TCCCAACATTTGTTGTCGCTGATGCAGGACGAACACAGGTACAAGCTGGGTCTAAGACAG 720 consensus_4834#1 TCCCAACATTTGTTGTCGCTGATGCAGGACGAACACAGGTACAAGCTGGGTCTAAGACAG 585 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 TTCTTGCAGTAGGGCCAGGGAGGAAAGCAGACATAGATTCAGTTACTGGGAAGTTGTCTT 780 consensus_4834#1 TTCTTGCAGTAGGGCCAGGGAGGAAAGCAGACATAGATTCAGTTACTGGGAAGTTGTCTT 645 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 TACTATGAACTGCATCTCAGACATGACACACTGATTCCTTCAAAGATTCAAACCAATTGT 840 consensus_4834#1 TACTATGAACTGCATCTCAGACATGACACACTGATTCCTTCAAAGATTCAAACCAATTGT 705 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 CGGGTTCAGTTGACGGTGGTATCTTATGCTTGTAGTCCCACAACAGGAGGTCAGAATCCT 900 consensus_4834#1 CGGGTTCAGTTGACGGTGGTATCTTATGCTTGTAGTCCCACAACAGGAGGTCAGAATCCT 765 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 TGGGATGCTTTACCCAGTTCTCAGGCTAACTCTGAAGCAATTCTTCAAGATCCAGTTCTA 960 consensus_4834#1 TGGGATGCTTTACCCAGTTCTCAGGCTAACTCTGAAGCAATTCTTCAAGATCCAGTTCTA 825 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 GAGTGGCTGATTCAAAATTGCCGTTGGTTGTAATCTTTTCCTCCACATGTCATTGTAGTC 1020 consensus_4834#1 GAGTGGCTGATTCAAAATTGCCGTTGGTTGTAATCTTTTCCTCCACATGTCATTGTAGTC 885 consensus_4834#2 ----------------------GTTGGTTGTAATCTTTTCCTCCACATGTCATTGTAGTC 38 ************************************** consensus_4834#0 TACCCACATGTTAGCGCATTCCAGCGAGTGGATTTTACTTTGGGACAATGAACAAGTATC 1080 consensus_4834#1 TACCCACATGTTAGCGCATTCCAGCGAGTGGATTTTACTTTGGGACAATGAACAAGTATC 945 consensus_4834#2 TACCCACATGTTAGCGCATTCCAGCGAGTGGATTTTACTTTGGGACCATGAACCAGTATC 98 ********************************************** ****** ****** consensus_4834#0 TGTAGTTTCGAAGTAGTAGGTTATCACCTTCCTCAAAGTAACGGATCATATGTACCGTAT 1140 consensus_4834#1 TGTAGTTTCGAAGTAGTAGGTTATCACCTTCCTCAAAGTAACGGATCATATGTACCGTAT 1005 consensus_4834#2 TGTAGTTTCGAAGTAGTAGGTTATCACCTTCCTCAA-GTAACGGATCATATGTACCGTAT 157 ************************************ *********************** consensus_4834#0 GTCCA-GAGGAAGCACAAAATGCGTAGAGGTGACTTGTCTTGTCAAACATCCTTGGTGTG 1199 consensus_4834#1 GTCCA-GAGGAAGCACAAAATGCGTAGAGGTGACTTGTCTTGTCAAACATCCTTGGTGTG 1064 consensus_4834#2 GTCCACGAGGAAGCACCAAATGCGTAGAGGTGACTTGTCTTGTCAAAC---CAAAAAAAA 214 ***** ********** ******************************* * consensus_4834#0 AAGCCTCTTGCTGTGAAAGTTCTGTATTCCCAAGTTCCCAACTAGTCCATATCTACTGGG 1259 consensus_4834#1 AAGCCTCTTGCTGTGAAAGTTCTGTATTCCCAAGTTCCCAACTAGTCCATATCTACTGGG 1124 consensus_4834#2 AA---------------------------------------------------------- 216 ** consensus_4834#0 AATTGAATCTCTTTCTTGCAGAGCTGGAACTTTGTGCACTAGTTCCAACAAAATT----- 1314 consensus_4834#1 AATTGAATCTCTTTCTTGCAGAGCTGGAACTTTGTGCACTAGTTCCAACAAAATTAGATT 1184 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 ------------------------------------------------------------ consensus_4834#1 CTTGCAAATATGGAAATATTGTATTGTAGGAGTAGTTCCACAAAGTTCCGATGAAATTTC 1244 consensus_4834#2 ------------------------------------------------------------ consensus_4834#0 --- consensus_4834#1 TCG 1247 consensus_4834#2 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||