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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1206 fasta sequence
[CAGTCTGGCTCCCTTCGTCTCCATTCCGTTGCTGTACCAACGACACCGCCAGCCACCGCCACCTCCTCTTCTCTTCCCCCCCGAAATCCTCGTGAATCTCTCGCTCTCTCGCCGCCGCCGCCGCCGCCGACGACGACGACCACCACGACGCTGCCTCGGATGCTCCCGGCCTCGCACCCGCTGCTCTACGCCTGCGCCTACCGGGACAGCGCCCTCGTCGCCGACCTCGCCCACGCCCCCCCGCCCCACGACGGCGGCGCCGCCGAGGACGACGCCCCGGCGGTCGCGGCCGCGCTCGTCGCCGGGGCGCCCGCGCACCACCGGCACGTCACCCACACGGCGTCGGGGCGGGCGCACGCGGTGCTCCTCGCGCCGCCGCTCGTGCTCGCGGCGGTCTCGCGGGCCCCGCAGCTGCCCTCGTCGCACCTGCTGCTCTTCCTCCGGCGGCTCCGATGCCTACCCGGGAACCGGATGCGGGACGAGATGCCGCGGCTGGCGCTGCGCCTGCCGTTCCCCGACGAGGAGGCGCTCGCGCGGGAGGCCGGGGAGGTGGCCGCAGCGGAGGCCGAGGCCGAGGAGGCGGAGCGGAGGGAAGGTGAGCTCGCGCGGAGGACG-CCCAAGAGGGAGCGCCGCGCCCACAGCGGCGGCGCCGGGTGGACGTGGAGGCGGAAGCTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTCGCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAGGTAAAAAGGGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTATGCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAAAGGCAAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATGACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTGGTTTGGTTGAGGACATCTGTAAACCCAGTAGTGTAATTTTTTCGTTCATTTACTATACAAAGCAATTGTTGAAATTTTGCCTCATTGATCTTGTTTCCCCCCTATGTTGTTCAGGACAGACCCAGATATATCTGAATCCTACTGTCATTACCATACGCAATACAAAGCAAGTGGTCTCTGTTCATG]
[+] EMBL AK065569 [CAGTCTGGCTCCCTTCGTCTCCATTCCGTTGCTGTACCAACGACACCGCCAGCCACCGCCACCTCCTCTTCTCTTCCCCCCCGAAATCCTCGTGAATCTCTCGCTCTCTCGCCGCCGCCGCCGCCGCCGACGACGACGACCACCACGACGCTGCCTCGGATGCTCCCGGCCTCGCACCCGCTGCTCTACGCCTGCGCCTACCGGGACAGCGCCCTCGTCGCCGACCTCGCCCACGCCCCCCCGCCCCACGACGGCGGCGCCGCCGAGGACGACGCCCCGGCGGTCGCGGCCGCGCTCGTCGCCGGGGCGCCCGCGCACCACCGGCACGTCACCCACACGGCGTCGGGGCGGGCGCACGCGGTGCTCCTCGCGCCGCCGCTCGTGCTCGCGGCGGTCTCGCGGGCCCCGCAGCTGCCCTCGTCGCACCTGCTGCTCTTCCTCCGGCGGCTCCGATGCCTACCCGGGAACCGGATGCGGGACGAGATGCCGCGGCTGGCGCTGCGCCTGCCGTTCCCCGACGAGGAGGCGCTCGCGCGGGAGGCCGGGGAGGTGGCCGCAGCGGAGGCCGAGGCCGAGGAGGCGGAGCGGAGGGAAGGTGAGCTCGCGCGGAGGACG CCCAAGAGGGAGCGCCGCGCCCACAGCGGCGGCGCCGGGTGGACGTGGAGGCGGAAGCTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTCGCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAGGTAAAAAGGGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTATGCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAAAGGCAAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATGACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTGGTTTGGTTGAGGACATCTGTAAACCCAGTAGTGTAATTTTTTCGTTCATTTACTATACAAAGCAATTGTTGAAATTTTGCCTCATTGATCTTGTTTCCCCCCTATGTTGTTCAGGACAGACCCAGATATATCTGAATCCTACTGTCATTACCATACGCAATACAAAGCAAGTGGTCTC ]
[+] EMBL CA766623 [ AGGACGAGACAAGGGGGAGCGCCGCGCCCGCAGCGGCGGCGCCGGGTGGACGTGGAGGCGGAAGCTGTGGCTCATCGCCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTCGCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAAGTAAAAAGGGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTNCTCCTTATGCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAAAGGCAAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATGACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTNGAATTTGTTGGTTTGGTTGAGGACATCTGTNAACCCANNAGNGTAATTTTTTCGNTCATTTACTATACAAAGCAAATGTTGAAATTTTGCCTCATTGATCTTGNTNCCCCCCTATGTTGNTCAGGACAGACCCAGATATATCTGAATCCTACTGTCATTACCATACGCAATACAAAGCAAGTGGTCTCTGTTCATG]
consensusID : consensus_4836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[AGACAAGGGGGAGCGCCGCGCCCGCAACGGCGGCGCCGGGTGGACGTGGAGGCGGAAACTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTCGCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAAGTAAAAAGGGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTATGCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAAAGGCGAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATGACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTGGTTTGGTTGAGGACATCTGTAAACCCAGTAGGGTAATTTTTTCGTTCATTTACTATACAAAGCAAATGTTGAAATTTTGCCTCATTGATCTTGTTCCCCCCCTATGTTGTTCAGGACAGACCCAGATATATTTGAATCCTACTGTCATTACCATTCGCAATAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA761921 [AGACAAGGGGGAGCGCCGCGCCCGCAACGGCGGCGCCGGGTGGACGTGGAGGCGGAAACTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTCGCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAAGTAAAAAGGGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTATGCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAAAGGCGAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATGACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTGGTTTGGTTGAGGACATCTGTAAACCCAGTAGGGTAATTTTTTCGTTCATTTACTATACAAAGCAAATGTTGAAATTTTGCCTCATTGATCTTGTTCCCCCCCTATGTTGTTCAGGACAGACCCAGATATATTTGAATCCTACTGTCATTACCATTCGCAATAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4836#0 CAGTCTGGCTCCCTTCGTCTCCATTCCGTTGCTGTACCAACGACACCGCCAGCCACCGCC 60
consensus_4836#1 ------------------------------------------------------------
consensus_4836#0 ACCTCCTCTTCTCTTCCCCCCCGAAATCCTCGTGAATCTCTCGCTCTCTCGCCGCCGCCG 120
consensus_4836#1 ------------------------------------------------------------
consensus_4836#0 CCGCCGCCGACGACGACGACCACCACGACGCTGCCTCGGATGCTCCCGGCCTCGCACCCG 180
consensus_4836#1 ------------------------------------------------------------
consensus_4836#0 CTGCTCTACGCCTGCGCCTACCGGGACAGCGCCCTCGTCGCCGACCTCGCCCACGCCCCC 240
consensus_4836#1 ------------------------------------------------------------
consensus_4836#0 CCGCCCCACGACGGCGGCGCCGCCGAGGACGACGCCCCGGCGGTCGCGGCCGCGCTCGTC 300
consensus_4836#1 ------------------------------------------------------------
consensus_4836#0 GCCGGGGCGCCCGCGCACCACCGGCACGTCACCCACACGGCGTCGGGGCGGGCGCACGCG 360
consensus_4836#1 ------------------------------------------------------------
consensus_4836#0 GTGCTCCTCGCGCCGCCGCTCGTGCTCGCGGCGGTCTCGCGGGCCCCGCAGCTGCCCTCG 420
consensus_4836#1 ------------------------------------------------------------
consensus_4836#0 TCGCACCTGCTGCTCTTCCTCCGGCGGCTCCGATGCCTACCCGGGAACCGGATGCGGGAC 480
consensus_4836#1 ------------------------------------------------------------
consensus_4836#0 GAGATGCCGCGGCTGGCGCTGCGCCTGCCGTTCCCCGACGAGGAGGCGCTCGCGCGGGAG 540
consensus_4836#1 ------------------------------------------------------------
consensus_4836#0 GCCGGGGAGGTGGCCGCAGCGGAGGCCGAGGCCGAGGAGGCGGAGCGGAGGGAAGGTGAG 600
consensus_4836#1 ------------------------------------------------------------
consensus_4836#0 CTCGCGCGGAGGACGCCCAAGAGGGAGCGCCGCGCCCACAGCGGCGGCGCCGGGTGGACG 660
consensus_4836#1 --------------AGACAAGGGGGAGCGCCGCGCCCGCAACGGCGGCGCCGGGTGGACG 46
**** *************** ** *******************
consensus_4836#0 TGGAGGCGGAAGCTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTC 720
consensus_4836#1 TGGAGGCGGAAACTGTGGCTCATCGTCCTCGCGGATCTCGTGCTCCTCTTCGTCCTCTTC 106
*********** ************************************************
consensus_4836#0 GCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAGGTAAAAAG 780
consensus_4836#1 GCTGCCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATAAGTAAAAAG 166
*************************************************** ********
consensus_4836#0 GGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTAT 840
consensus_4836#1 GGTGCTAGGTTTCAAGACAAAAAAAGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTAT 226
************************************************************
consensus_4836#0 GCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAA 900
consensus_4836#1 GCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGCCAGGATTACAAAGTAA 286
************************************************************
consensus_4836#0 AGGCAAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATG 960
consensus_4836#1 AGGCGAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATG 346
**** *******************************************************
consensus_4836#0 ACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTG 1020
consensus_4836#1 ACATCTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTG 406
************************************************************
consensus_4836#0 GTTTGGTTGAGGACATCTGTAAACCCAGTAGTGTAATTTTTTCGTTCATTTACTATACAA 1080
consensus_4836#1 GTTTGGTTGAGGACATCTGTAAACCCAGTAGGGTAATTTTTTCGTTCATTTACTATACAA 466
******************************* ****************************
consensus_4836#0 AGCAATTGTTGAAATTTTGCCTCATTGATCTTGTTTCCCCCCTATGTTGTTCAGGACAGA 1140
consensus_4836#1 AGCAAATGTTGAAATTTTGCCTCATTGATCTTGTTCCCCCCCTATGTTGTTCAGGACAGA 526
***** ***************************** ************************
consensus_4836#0 CCCAGATATATCTGAATCCTACTGTCATTACCATACGCAATACAAAGCAAGTGGTCTCTG 1200
consensus_4836#1 CCCAGATATATTTGAATCCTACTGTCATTACCATTCGCAATAAAAAAAAAAAAAAAAAAA 586
*********** ********************** ******* *** **
consensus_4836#0 TTCATG 1206
consensus_4836#1 AAAAA- 591
*
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||