These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4841#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1677 fasta sequence [TCCAGCCAGCCACACCGCACATAACACACACACTCTCTCTCGCCATGGACACCGCCGATGAGCGGGAGACGCCGATAAGTTGGAGAATCTCTTTCCCATTAGACGCCAAAAGACGAGCAAGAGACGATGCGCTTACAGGAACGCCTCAAAGACCTACGGCTTCAGGAGGAAATTTGGCGTATCCTTTCCAAGATTTGCGCCTATGAGGGGACGGAGACGATCTCGAGTCCGATACCCATCTTAGTTTACTCGACATCAGACCCACAGCTTTGGGAGGCCGCTGTCCGCTACCAGGAGCAAGTCGGTGGGAGAGTAAGATTTCCCCTTCTGTATCTCAAGGTGGACAACGAGTCCGGGAAGGTTGTGGACGTGGGAAAGTACTGGGACGATCGGCACGGCGTGGGAGAACCTAGAGGTCGTTTCAAGTCATTCAAATGGTTTGCGGACAAGCATAAAATGTTTACGGCTGAAGCTGAAACAGCATCCTCCACCAAATCGACTGCACAACTTCAGCAGCACTCGTATTCAGAGGAGGAAGATTTGACCATGTACAAATCCCATCAACAATTACAGGTCTCAGAGGAGAAAGATACAACCATAGAAGAAAACTCAGAGAAAAAGTGGCATGCACGTCTCATAGATGAATACATTCGTGGAATATTGGAAGGAATGATAACTCAGATACGGAGATTGAGGACGATGAGAATGTTCTCTCTAAGAGTCCTGTGGAAGTTGACCCATGTGCTATTGGTCAATTTCAACATTTCAAGGAGATGAATTCTCTCCGTGAAGAATGTGTCACTCCAAACCCTAAGAATGTTGACAGCTCATCAAAAATATCATCGCAACAAGGACATGCCAAATTGGCAGCAGGTTCTTCTAGCTCACACTATAAGGCAGTGGGATATCATGAGTATGCCGATCTAATCAATCGAATAAACAAGGGTGTACAACTCTATTCTAATAGCATGCAAGAACTTTCTCAGAAAGGAACAGGTGGACTTAGTGAAGCGTTCGTGGCATTCAGAAACTATTTTGTAGAAAAGGATGTTTTTGAGGAAATTGATTACAAATTCGGAGAAATATTGCATCACTGCTCTCGTACTGTGGGAATTAGGAAGATTTATCATCACTATAATTTCACAGTTGAGATGAAAAATGATAAGGACTGTTGGATCCCTAGGGTTTATTTTGCGGAAGTCAAGATGAAGTATGGTTTCAAGTATCGTTTCTGTGCTCCTCTCGAGGCGACTGATGATGGTCAATGTTATTCGTGCAAGAACCAAGGTATTGATAAACTCAAGCACCCATCTAGAGGAGGGTACTCAAAAGGTTATGATGGTGCTGTATGCAACCACCTTGGTGAGGATAGTTCTGATGAAGAGGACGAACTTATGTAACCACCTGCTAACTAGCCAGAGCCTTTAGGCATTAGAGCCAGAAGCGAAACTGATCGAGTGGCAGAGAAGCCAAACAGAGAGTTGATACTTAAGCTGTATTTATATAAATTTGTGCCTTCTGTCGGCAAGTTGTGCCAACTTTAGCTATTTATATAAAATTAGTTTGTACAAAGTACTTACGCACACACCTTAGCTTTGCAGCTTCGCTAATTAAGTGCTACCATGTACTTGAGCCATATGTGCTGTATTGGGTATTTTGCAAATTTACATTTATCAT] [+] EMBL AK109690 [TCCAGCCAGCCACACCGCACATAACACACACACTCTCTCTCGCCATGGACACCGCCGATGAGCGGGAGACGCCGATAAGTTGGAGAATCTCTTTCCCATTAGACGCCAAAAGACGAGCAAGAGACGATGCGCTTACAGGAACGCCTCAAAGACCTACGGCTTCAGGAGGAAATTTGGCGTATCCTTTCCAAGATTTGCGCCTATGAGGGGACGGAGACGATCTCGAGTCCGATACCCATCTTAGTTTACTCGACATCAGACCCACAGCTTTGGGAGGCCGCTGTCCGCTACCAGGAGCAAGTCGGTGGGAGAGTAAGATTTCCCCTTCTGTATCTCAAGGTGGACAACGAGTCCGGGAAGGTTGTGGACGTGGGAAAGTACTGGGACGATCGGCACGGCGTGGGAGAACCTAGAGGTCGTTTCAAGTCATTCAAATGGTTTGCGGACAAGCATAAAATGTTTACGGCTGAAGCTGAAACAGCATCCTCCACCAAATCGACTGCACAACTTCAGCAGCACTCGTATTCAGAGGAGGAAGATTTGACCATGTACAAATCCCATCAACAATTACAGGTCTCAGAGGAGAAAGATACAACCATAGAAGAAAACTCAGAGAAAAAGTGGCATGCACGTCTCATAGATGAATACATTCGTGGAATATTGGAAGGAATGATAACTCAGATACGGAGATTGAGGACGATGAGAATGTTCTCTCTAAGAGTCCTGTGGAAGTTGACCCATGTGCTATTGGTCAATTTCAACATTTCAAGGAGATGAATTCTCTCCGTGAAGAATGTGTCACTCCAAACCCTAAGAATGTTGACAGCTCATCAAAAATATCATCGCAACAAGGACATGCCAAATTGGCAGCAGGTTCTTCTAGCTCACACTATAAGGCAGTGGGATATCATGAGTATGCCGATCTAATCAATCGAATAAACAAGGGTGTACAACTCTATTCTAATAGCATGCAAGAACTTTCTCAGAAAGGAACAGGTGGACTTAGTGAAGCGTTCGTGGCATTCAGAAACTATTTTGTAGAAAAGGATGTTTTTGAGGAAATTGATTACAAATTCGGAGAAATATTGCATCACTGCTCTCGTACTGTGGGAATTAGGAAGATTTATCATCACTATAATTTCACAGTTGAGATGAAAAATGATAAGGACTGTTGGATCCCTAGGGTTTATTTTGCGGAAGTCAAGATGAAGTATGGTTTCAAGTATCGTTTCTGTGCTCCTCTCGAGGCGACTGATGATGGTCAATGTTATTCGTGCAAGAACCAAGGTATTGATAAACTCAAGCACCCATCTAGAGGAGGGTACTCAAAAGGTTATGATGGTGCTGTATGCAACCACCTTGGTGAGGATAGTTCTGATGAAGAGGACGAACTTATGTAACCACCTGCTAACTAGCCAGAGCCTTTAGGCATTAGAGCCAGAAGCGAAACTGATCGAGTGGCAGAGAAGCCAAACAGAGAGTTGATACTTAAGCTGTATTTATATAAATTTGTGCCTTCTGTCGGCAAGTTGTGCCAACTTTAGCTATTTATATAAAATTAGTTTGTACAAAGTACTTACGCACACACCTTAGCTTTGCAGCTTCGCTAATTAAGTGCTACCATGTACTTGAGCCATATGTGCTGTATTGGGTATTTTGCAAATTTACATTTATCAT] [-] EMBL BE530899 [ TATTTTGCAGAAAAGGATGTTTTTGAGGAAATTGATTACAAATTCGGAGAAATATTGCATCACTGCTCTCGTACTGTGGGAATTAGGAAGATTTATCATCACTATAATTTCACAGTTGAGATGAAAAATGATAAGGACTGTTGGATCCCTAGGGTTTATTTTGCGGAAGTCAAGATGAAGTATGGTTTCAAGTATCGTTTCTGTGCTCCTCTCGAGGCGACTGATGATGGTCAATGTTATTCGTGCAAGAACCAAGGTATTGATAAACTCAAGCACCCATCTAGAGGAGGGTACTCAAAAGGTTATGATGGTGCTGTATGCAACCACCTTGGTGAGGATAGTTCTGATGAAGAGGACGAACTTATGTAACCACCTGCTAACTAGCCAGAGCCTTTAGGCATTAGAGCCAGAAGCGAAACTGATCGAGTGGCAGAGAAGCCAAACAGAGAGTTGATACTTAAGCTGTATTTATATAAATTTGTGCCTTCTGTCGGCAAGTTGTGCCAACTTTAGC ] consensusID : consensus_4841#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [GATAACTCAGATACGGAGATTGAGGACGATGAGAATGTTCTCTCTAAGAGTCCTGTGGAAGTTGACCCATGTGCTATTGGTCAATTTCAACATTTCAAGGAGATGAATTCTCTCCGTGAAGAATGTGTCACTCCAAACCCTAAGAATGTTGACAGCTCATCAAAAATATCATCGCAACAAGGACATGCCAAATTGGCAGCAGGTTCTTCTAGGTAATTTCTGCACACTGATTGTAAACATGTTCTCTATTTTTGCTACGTAGTGTTTATATCATGGCGTCAAGATTGTAAGTTTGAAGCAATGGGCATATTAGACTGTGTCATTTTAAACATGTTTTTGGTTTAGTTAATGTTTTTTGCATGCTAAAGCTAAACTATGACATTTTTATAATGATGACTAATTTTGGGTTGAAACACAGCTCACACTATAAGGCAGTGGGATATCATGAGTATGCCGATCTAATCAATCGAATAAACAAGGGTGTACAACTCTATTCTAATAGCATGCAAGAACTTTCTCAGAAAGGAACAGGTGGACTTAGTGAAGCGTTCGTGGCATTCAGAAA] [+] EMBL CF306742 [GATAACTCAGATACGGAGATTGAGGACGATGAGAATGTTCTCTCTAAGAGTCCTGTGGAAGTTGACCCATGTGCTATTGGTCAATTTCAACATTTCAAGGAGATGAATTCTCTCCGTGAAGAATGTGTCACTCCAAACCCTAAGAATGTTGACAGCTCATCAAAAATATCATCGCAACAAGGACATGCCAAATTGGCAGCAGGTTCTTCTAGGTAATTTCTGCACACTGATTGTAAACATGTTCTCTATTTTTGCTACGTAGTGTTTATATCATGGCGTCAAGATTGTAAGTTTGAAGCAATGGGCATATTAGACTGTGTCATTTTAAACATGTTTTTGGTTTAGTTAATGTTTTTTGCATGCTAAAGCTAAACTATGACATTTTTATAATGATGACTAATTTTGGGTTGAAACACAGCTCACACTATAAGGCAGTGGGATATCATGAGTATGCCGATCTAATCAATCGAATAAACAAGGGTGTACAACTCTATTCTAATAGCATGCAAGAACTTTCTCAGAAAGGAACAGGTGGACTTAGTGAAGCGTTCGTGGCATTCAGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4841#0 TCCAGCCAGCCACACCGCACATAACACACACACTCTCTCTCGCCATGGACACCGCCGATG 60 consensus_4841#1 ------------------------------------------------------------ consensus_4841#0 AGCGGGAGACGCCGATAAGTTGGAGAATCTCTTTCCCATTAGACGCCAAAAGACGAGCAA 120 consensus_4841#1 ------------------------------------------------------------ consensus_4841#0 GAGACGATGCGCTTACAGGAACGCCTCAAAGACCTACGGCTTCAGGAGGAAATTTGGCGT 180 consensus_4841#1 ------------------------------------------------------------ consensus_4841#0 ATCCTTTCCAAGATTTGCGCCTATGAGGGGACGGAGACGATCTCGAGTCCGATACCCATC 240 consensus_4841#1 ------------------------------------------------------------ consensus_4841#0 TTAGTTTACTCGACATCAGACCCACAGCTTTGGGAGGCCGCTGTCCGCTACCAGGAGCAA 300 consensus_4841#1 ------------------------------------------------------------ consensus_4841#0 GTCGGTGGGAGAGTAAGATTTCCCCTTCTGTATCTCAAGGTGGACAACGAGTCCGGGAAG 360 consensus_4841#1 ------------------------------------------------------------ consensus_4841#0 GTTGTGGACGTGGGAAAGTACTGGGACGATCGGCACGGCGTGGGAGAACCTAGAGGTCGT 420 consensus_4841#1 ------------------------------------------------------------ consensus_4841#0 TTCAAGTCATTCAAATGGTTTGCGGACAAGCATAAAATGTTTACGGCTGAAGCTGAAACA 480 consensus_4841#1 ------------------------------------------------------------ consensus_4841#0 GCATCCTCCACCAAATCGACTGCACAACTTCAGCAGCACTCGTATTCAGAGGAGGAAGAT 540 consensus_4841#1 ------------------------------------------------------------ consensus_4841#0 TTGACCATGTACAAATCCCATCAACAATTACAGGTCTCAGAGGAGAAAGATACAACCATA 600 consensus_4841#1 ------------------------------------------------------------ consensus_4841#0 GAAGAAAACTCAGAGAAAAAGTGGCATGCACGTCTCATAGATGAATACATTCGTGGAATA 660 consensus_4841#1 ------------------------------------------------------------ consensus_4841#0 TTGGAAGGAATGATAACTCAGATACGGAGATTGAGGACGATGAGAATGTTCTCTCTAAGA 720 consensus_4841#1 -----------GATAACTCAGATACGGAGATTGAGGACGATGAGAATGTTCTCTCTAAGA 49 ************************************************* consensus_4841#0 GTCCTGTGGAAGTTGACCCATGTGCTATTGGTCAATTTCAACATTTCAAGGAGATGAATT 780 consensus_4841#1 GTCCTGTGGAAGTTGACCCATGTGCTATTGGTCAATTTCAACATTTCAAGGAGATGAATT 109 ************************************************************ consensus_4841#0 CTCTCCGTGAAGAATGTGTCACTCCAAACCCTAAGAATGTTGACAGCTCATCAAAAATAT 840 consensus_4841#1 CTCTCCGTGAAGAATGTGTCACTCCAAACCCTAAGAATGTTGACAGCTCATCAAAAATAT 169 ************************************************************ consensus_4841#0 CATCGCAACAAGGACATGCCAAATTGGCAGCAGGTTCTTCTAGCT--------CACACTA 892 consensus_4841#1 CATCGCAACAAGGACATGCCAAATTGGCAGCAGGTTCTTCTAGGTAATTTCTGCACACTG 229 ******************************************* * ****** consensus_4841#0 ----TAAGGCAGTGGGATATCATGAGTATGCCGATCTAATCAATCGAATAAACAAGGGTG 948 consensus_4841#1 ATTGTAAACATGTTCTCTATTTTTGCTACGTAGTGTTTAT--ATCATGGCGTCAAGATTG 287 *** ** *** * ** * * * ** *** **** ** consensus_4841#0 TACAACTCTATTCTAATAGCATGCAAGAACTT-TCTCAGAAAGGAACAGGTGGACTTAGT 1007 consensus_4841#1 TA-AGTTTGAAGCAATGGGCATATTAGACTGTGTCATTTTAAACATGTTTTTGGTTTAGT 346 ** * * * * * **** *** * ** ** * * * ***** consensus_4841#0 GAAGCGTTCGTGGCATTCAGAAACTATTTTGTAGAAAAGGATGTTTTTGAGGAAATTGAT 1067 consensus_4841#1 TAA-TGTTTTTTGCATGCTAAAGCTAAACTAT-------GACATTTTT----ATAATGAT 394 ** *** * **** * ** *** * * ** ***** * * **** consensus_4841#0 TACAAATTCGGAGAAATATTGCATCACTGCTCTCGTACTGTGGGAATTAGGAAGATTTAT 1127 consensus_4841#1 GACTAATTTTGGG-----TTGAAACACAGCTCACACTATAAGGCAGTGGGATA---TCAT 446 ** **** * * *** * *** **** * * ** * * * * * ** consensus_4841#0 CATCACTATAATTTCACAGTTGAGATGAAAAATGATAAGGACTGTTGGATCCCTAGGGTT 1187 consensus_4841#1 GAGTATGCCGATCTAATCAATCGAATAAACAAGGGT--GTACAACTCTATTCTAATAGCA 504 * * ** * * * ** ** ** * * * ** * ** * * * consensus_4841#0 TATTTTGCGGAAGTCAAGATGAAGTATG-GTTTCAAGTATCGTTTCTGTGCTCCTCTCGA 1246 consensus_4841#1 TGCAAGAACTTTCTCAGAAAGGAACAGGTGGACTTAGTGAAGCGTTCGTGGCATTCAGAA 564 * *** * * * * * * *** * * *** ** * consensus_4841#0 GGCGACTGATGATGGTCAATGTTATTCGTGCAAGAACCAAGGTATTGATAAACTCAAGCA 1306 consensus_4841#1 A----------------------------------------------------------- 565 consensus_4841#0 CCCATCTAGAGGAGGGTACTCAAAAGGTTATGATGGTGCTGTATGCAACCACCTTGGTGA 1366 consensus_4841#1 ------------------------------------------------------------ consensus_4841#0 GGATAGTTCTGATGAAGAGGACGAACTTATGTAACCACCTGCTAACTAGCCAGAGCCTTT 1426 consensus_4841#1 ------------------------------------------------------------ consensus_4841#0 AGGCATTAGAGCCAGAAGCGAAACTGATCGAGTGGCAGAGAAGCCAAACAGAGAGTTGAT 1486 consensus_4841#1 ------------------------------------------------------------ consensus_4841#0 ACTTAAGCTGTATTTATATAAATTTGTGCCTTCTGTCGGCAAGTTGTGCCAACTTTAGCT 1546 consensus_4841#1 ------------------------------------------------------------ consensus_4841#0 ATTTATATAAAATTAGTTTGTACAAAGTACTTACGCACACACCTTAGCTTTGCAGCTTCG 1606 consensus_4841#1 ------------------------------------------------------------ consensus_4841#0 CTAATTAAGTGCTACCATGTACTTGAGCCATATGTGCTGTATTGGGTATTTTGCAAATTT 1666 consensus_4841#1 ------------------------------------------------------------ consensus_4841#0 ACATTTATCAT 1677 consensus_4841#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||