cluster # 4844

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Oryza sativa
cluster # 4844 cluster # 4844 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4844#0 length = 1311 sequences # 2

consensus_4844#1 length = 663 sequences # 1

consensusID : consensus_4844#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1311
fasta sequence

                              [GGCACGCCGTTCTACCGCCACAAGCCTGTCCGCCGGGGCGCCGCCGCCGGCCCCGCGAGGCTCGTCGGGAGGGTGTTCAGGGCGGCGTTCGCGAACCGGAGACGGCAGCTGCACGGTGATCAGCTGCACGAGCACGACGCGGCGTGGTACGCCGCCGCCGGGACGAAGCGGCGGCTGCACCACACGCGGGGCTACAGGTTCTTGGACAAGGCGGCGCTGCCGGCGGCGGCGGCGGAGGCGGAGGCGTGCACGGTGACGGAGGTGGAGGAGGTGAAGCTGATCACGGGGATGATCGTGGTGTGGCTGACGACGCTGGTGCCGTGCACCATCTGGGCGCAGGTGAACACGCTGTTCGTGAAGCAGGGCACCACCCTGGACCGCACCGTCGGCGGCGTCCGCATCCCGGCGGCCTCCCTCGGCAGCTTCATCACCATCTCCATGCTCCTCTCCATCCCGGTCTACGACCGCGTGCTCGTCCCCCTCGCCCGCCGCCGCACCGGCGAACCCCGCGGCATCACGCTCCTGCAGCGCCTCGGCGTCGGGTCGGCGCTCCAGGTGGCGGCGGTGGCGTGCGCCTGCCTCGTGGAGCTCCGCCGCATGCGCGCGATCCGCGCCGCCTCCGCCACGGCCGCCCACGACACCGTCCCGATGAGCATCTTCTGGATGCTGCCGCAGTACATCCTCATCGGCGTCGGCGACGTGTTCAGCTCCGTCGGCATCCTCGAGTTCTTCTACGAGCAGTCGCCGCAGGGGATGCAGAGCCTCGGCACCACCTTCTTCACCAGCGGCCTCGGCGTCGGAAACTTCCTCAACAGCCTGCTCGTCACCGCCGTCGACCGCGCCACCAGGGGCGGCGGCGCCGGCAAGAGCTGGATCGGCGACAACCTCAACGACTCGCACCTCGACTACTACTACGCCTTCCTGCTGCTGCTCGCGGTGATCAACCTGGCGGTGTTCGTGTGGGTGGCGACGAGGTACGAGTACAAGAAGGAGTACTTGTCGGACGGCGGGGACGTCGTCGCCGGGATGGCGTCGCGGGAGACGGAGATGGCCGGCGGCGGCAAGGGGAAGGTGGTGGAGAGGAGCAAGGTGATCGACGCGCCATTGGTGGTGGTGGAAGAAGTGCGTGCCGTATAATTTGCGGTTCATACTGAGTAACTTGGTATAGAACTATAGATCATCAGCATATACGTACGGAATACACGTATAAAACTATATATACGTATATAATGGACCATACATGGGTTGAAATTCGGGTTAAGCAATATGGAAATGCCACGTACCATAATCCCGTCCGGACGGGATCCCTTT]

[+] EMBL AK108393             [GGCACGCCGTTCTACCGCCACAAGCCTGTCCGCCGGGGCGCCGCCGCCGGCCCCGCGAGGCTCGTCGGGAGGGTGTTCAGGGCGGCGTTCGCGAACCGGAGACGGCAGCTGCACGGTGATCAGCTGCACGAGCACGACGCGGCGTGGTACGCCGCCGCCGGGACGAAGCGGCGGCTGCACCACACGCGGGGCTACAGGTTCTTGGACAAGGCGGCGCTGCCGGCGGCGGCGGCGGAGGCGGAGGCGTGCACGGTGACGGAGGTGGAGGAGGTGAAGCTGATCACGGGGATGATCGTGGTGTGGCTGACGACGCTGGTGCCGTGCACCATCTGGGCGCAGGTGAACACGCTGTTCGTGAAGCAGGGCACCACCCTGGACCGCACCGTCGGCGGCGTCCGCATCCCGGCGGCCTCCCTCGGCAGCTTCATCACCATCTCCATGCTCCTCTCCATCCCGGTCTACGACCGCGTGCTCGTCCCCCTCGCCCGCCGCCGCACCGGCGAACCCCGCGGCATCACGCTCCTGCAGCGCCTCGGCGTCGGGTCGGCGCTCCAGGTGGCGGCGGTGGCGTGCGCCTGCCTCGTGGAGCTCCGCCGCATGCGCGCGATCCGCGCCGCCTCCGCCACGGCCGCCCACGACACCGTCCCGATGAGCATCTTCTGGATGCTGCCGCAGTACATCCTCATCGGCGTCGGCGACGTGTTCAGCTCCGTCGGCATCCTCGAGTTCTTCTACGAGCAGTCGCCGCAGGGGATGCAGAGCCTCGGCACCACCTTCTTCACCAGCGGCCTCGGCGTCGGAAACTTCCTCAACAGCCTGCTCGTCACCGCCGTCGACCGCGCCACCAGGGGCGGCGGCGCCGGCAAGAGCTGGATCGGCGACAACCTCAACGACTCGCACCTCGACTACTACTACGCCTTCCTGCTGCTGCTCGCGGTGATCAACCTGGCGGTGTTCGTGTGGGTGGCGACGAGGTACGAGTACAAGAAGGAGTACTTGTCGGACGGCGGGGACGTCGTCGCCGGGATGGCGTCGCGGGAGACGGAGATGGCCGGCGGCGGCAAGGGGAAGGTGGTGGAGAGGAGCAAGGTGATCGACGCGCCATTGGTGGTGGTGGAAGAAGTGCGTGCCGTATAATTTGCGGTTCATACTGAGTAACTTGGTATAGAACTATAGATCATCAGCATATACGTACGGAATACACGTATAAAACTATATATACGTATATAATGGACCATACATGGGTTGAAATTCGGGTTAAGCAATATGGAAATGCCACGTACCATAATCCCGTCCGGACGGGATCCCTTT]
[+] EMBL BI812508             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                cacGCCTCGGC TCGGAAACTTCTTCAACAGCCTGCTCGTCACCGCCGTCGACCGCGCCACCAGGGGC GCGGCGCCGGCAAGAGCTGGATCGGCGACAACCTCAACGACTCGCACCTCGACTACTACTACGCCTTCCTGCTGCTGCTCGCGGTGATCAACCTGCCGGTGTTCGTGTGGGTGGCGACGAGGTACGAGTACAAGAAGGAGTACTTGTCGGACGGCGGGGACGTCGTCGCCGGGATGGCGTCGCGGGAGACGGAGATGGCCGGCGGCGGCAAGGGGAAGGTGGTGGAGAGGAGCAAGGTGATCGACGCGCCATTGGTGGTGGTGGAAGAAGTGCGTGCCGTATAATTTGCGGTTCATACTGAGTAACTTGGTATAGAACTATAGATCATCAGCATATACGTACGGAATACACGTAAAACTATATATATACGTATATAATGGACCATACATGGGTTGAAATTCGGGTTAAGCCATATGGAAATGCTACaaaaaaaaa                       ]




>consensus_4844#0
GGCACGCCGTTCTACCGCCACAAGCCTGTCCGCCGGGGCGCCGCCGCCGGCCCCGCGAGG
CTCGTCGGGAGGGTGTTCAGGGCGGCGTTCGCGAACCGGAGACGGCAGCTGCACGGTGAT
CAGCTGCACGAGCACGACGCGGCGTGGTACGCCGCCGCCGGGACGAAGCGGCGGCTGCAC
CACACGCGGGGCTACAGGTTCTTGGACAAGGCGGCGCTGCCGGCGGCGGCGGCGGAGGCG
GAGGCGTGCACGGTGACGGAGGTGGAGGAGGTGAAGCTGATCACGGGGATGATCGTGGTG
TGGCTGACGACGCTGGTGCCGTGCACCATCTGGGCGCAGGTGAACACGCTGTTCGTGAAG
CAGGGCACCACCCTGGACCGCACCGTCGGCGGCGTCCGCATCCCGGCGGCCTCCCTCGGC
AGCTTCATCACCATCTCCATGCTCCTCTCCATCCCGGTCTACGACCGCGTGCTCGTCCCC
CTCGCCCGCCGCCGCACCGGCGAACCCCGCGGCATCACGCTCCTGCAGCGCCTCGGCGTC
GGGTCGGCGCTCCAGGTGGCGGCGGTGGCGTGCGCCTGCCTCGTGGAGCTCCGCCGCATG
CGCGCGATCCGCGCCGCCTCCGCCACGGCCGCCCACGACACCGTCCCGATGAGCATCTTC
TGGATGCTGCCGCAGTACATCCTCATCGGCGTCGGCGACGTGTTCAGCTCCGTCGGCATC
CTCGAGTTCTTCTACGAGCAGTCGCCGCAGGGGATGCAGAGCCTCGGCACCACCTTCTTC
ACCAGCGGCCTCGGCGTCGGAAACTTCCTCAACAGCCTGCTCGTCACCGCCGTCGACCGC
GCCACCAGGGGCGGCGGCGCCGGCAAGAGCTGGATCGGCGACAACCTCAACGACTCGCAC
CTCGACTACTACTACGCCTTCCTGCTGCTGCTCGCGGTGATCAACCTGGCGGTGTTCGTG
TGGGTGGCGACGAGGTACGAGTACAAGAAGGAGTACTTGTCGGACGGCGGGGACGTCGTC
GCCGGGATGGCGTCGCGGGAGACGGAGATGGCCGGCGGCGGCAAGGGGAAGGTGGTGGAG
AGGAGCAAGGTGATCGACGCGCCATTGGTGGTGGTGGAAGAAGTGCGTGCCGTATAATTT
GCGGTTCATACTGAGTAACTTGGTATAGAACTATAGATCATCAGCATATACGTACGGAAT
ACACGTATAAAACTATATATACGTATATAATGGACCATACATGGGTTGAAATTCGGGTTA
AGCAATATGGAAATGCCACGTACCATAATCCCGTCCGGACGGGATCCCTTT

consensusID : consensus_4844#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 663
fasta sequence

                              [CGCGCGATCCGCGCCGCCTCCGCCACGGCCGCCCACGACACCGTCCCGATGAGCATCTTCTGGATGCTGCCGCAGTACATCCTCATCGGCGTCGGCGACGTGTTCAGCTCCGTCGGCATCCTCGAGTTCTTCTACGAGCAGTCGCCGCAGGGGATGCAGAGCCTCGGCACCACCTTTTTCACCAGCGGCCTCGGCGTCGGAAACTTCCTCAACAGCCTGCTTGTCACCGCCGTCGACCGCGCCACCAGGGGCGGCGGCGCCGGCAAGAGCTGGATCGGCGACAACCTCAACGACTCGCACCTCGACTACTACTACGCCTTCCTGCTGCTGCTCGCGGTGATCAACCTGGCGGTGTTCGTGTGGGTGGCGACGAGGTACGAGTACAAGAAGGAGTACTTGTCGGACGGCGGGGACGTCGTCGCCGGGATGGCGTCGCGGGAGACGGAGATGGCCGGCGGCGGCAAGGGGAAGGTGGTGGAGAGGAGCAAGGTGATCGACGCGCCATTGGTGGTGGTGGAAGAAGTGCGTGCCGTATAATTTGCGGTTCATACTGAGTAACTTGGTATAGAACTATAGATCATCAGCATATACGTACGGAATACACGTATAAAACTATATATAAGGGATATAATGGACCATACATGGGTTGAAAAAAAATAAAAA]

[-] EMBL CB671726             [CGCGCGATCCGCGCCGCCTCCGCCACGGCCGCCCACGACACCGTCCCGATGAGCATCTTCTGGATGCTGCCGCAGTACATCCTCATCGGCGTCGGCGACGTGTTCAGCTCCGTCGGCATCCTCGAGTTCTTCTACGAGCAGTCGCCGCAGGGGATGCAGAGCCTCGGCACCACCTTTTTCACCAGCGGCCTCGGCGTCGGAAACTTCCTCAACAGCCTGCTTGTCACCGCCGTCGACCGCGCCACCAGGGGCGGCGGCGCCGGCAAGAGCTGGATCGGCGACAACCTCAACGACTCGCACCTCGACTACTACTACGCCTTCCTGCTGCTGCTCGCGGTGATCAACCTGGCGGTGTTCGTGTGGGTGGCGACGAGGTACGAGTACAAGAAGGAGTACTTGTCGGACGGCGGGGACGTCGTCGCCGGGATGGCGTCGCGGGAGACGGAGATGGCCGGCGGCGGCAAGGGGAAGGTGGTGGAGAGGAGCAAGGTGATCGACGCGCCATTGGTGGTGGTGGAAGAAGTGCGTGCCGTATAATTTGCGGTTCATACTGAGTAACTTGGTATAGAACTATAGATCATCAGCATATACGTACGGAATACACGTATAAAACTATATATAAGGGATATAATGGACCATACATGGGTTGAAAAAAAATAAAAA]




>consensus_4844#1
CGCGCGATCCGCGCCGCCTCCGCCACGGCCGCCCACGACACCGTCCCGATGAGCATCTTC
TGGATGCTGCCGCAGTACATCCTCATCGGCGTCGGCGACGTGTTCAGCTCCGTCGGCATC
CTCGAGTTCTTCTACGAGCAGTCGCCGCAGGGGATGCAGAGCCTCGGCACCACCTTTTTC
ACCAGCGGCCTCGGCGTCGGAAACTTCCTCAACAGCCTGCTTGTCACCGCCGTCGACCGC
GCCACCAGGGGCGGCGGCGCCGGCAAGAGCTGGATCGGCGACAACCTCAACGACTCGCAC
CTCGACTACTACTACGCCTTCCTGCTGCTGCTCGCGGTGATCAACCTGGCGGTGTTCGTG
TGGGTGGCGACGAGGTACGAGTACAAGAAGGAGTACTTGTCGGACGGCGGGGACGTCGTC
GCCGGGATGGCGTCGCGGGAGACGGAGATGGCCGGCGGCGGCAAGGGGAAGGTGGTGGAG
AGGAGCAAGGTGATCGACGCGCCATTGGTGGTGGTGGAAGAAGTGCGTGCCGTATAATTT
GCGGTTCATACTGAGTAACTTGGTATAGAACTATAGATCATCAGCATATACGTACGGAAT
ACACGTATAAAACTATATATAAGGGATATAATGGACCATACATGGGTTGAAAAAAAATAA
AAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4844#0      GGCACGCCGTTCTACCGCCACAAGCCTGTCCGCCGGGGCGCCGCCGCCGGCCCCGCGAGG 60
consensus_4844#1      ------------------------------------------------------------
                                                                                  

consensus_4844#0      CTCGTCGGGAGGGTGTTCAGGGCGGCGTTCGCGAACCGGAGACGGCAGCTGCACGGTGAT 120
consensus_4844#1      ------------------------------------------------------------
                                                                                  

consensus_4844#0      CAGCTGCACGAGCACGACGCGGCGTGGTACGCCGCCGCCGGGACGAAGCGGCGGCTGCAC 180
consensus_4844#1      ------------------------------------------------------------
                                                                                  

consensus_4844#0      CACACGCGGGGCTACAGGTTCTTGGACAAGGCGGCGCTGCCGGCGGCGGCGGCGGAGGCG 240
consensus_4844#1      ------------------------------------------------------------
                                                                                  

consensus_4844#0      GAGGCGTGCACGGTGACGGAGGTGGAGGAGGTGAAGCTGATCACGGGGATGATCGTGGTG 300
consensus_4844#1      ------------------------------------------------------------
                                                                                  

consensus_4844#0      TGGCTGACGACGCTGGTGCCGTGCACCATCTGGGCGCAGGTGAACACGCTGTTCGTGAAG 360
consensus_4844#1      ------------------------------------------------------------
                                                                                  

consensus_4844#0      CAGGGCACCACCCTGGACCGCACCGTCGGCGGCGTCCGCATCCCGGCGGCCTCCCTCGGC 420
consensus_4844#1      ------------------------------------------------------------
                                                                                  

consensus_4844#0      AGCTTCATCACCATCTCCATGCTCCTCTCCATCCCGGTCTACGACCGCGTGCTCGTCCCC 480
consensus_4844#1      ------------------------------------------------------------
                                                                                  

consensus_4844#0      CTCGCCCGCCGCCGCACCGGCGAACCCCGCGGCATCACGCTCCTGCAGCGCCTCGGCGTC 540
consensus_4844#1      ------------------------------------------------------------
                                                                                  

consensus_4844#0      GGGTCGGCGCTCCAGGTGGCGGCGGTGGCGTGCGCCTGCCTCGTGGAGCTCCGCCGCATG 600
consensus_4844#1      ------------------------------------------------------------
                                                                                  

consensus_4844#0      CGCGCGATCCGCGCCGCCTCCGCCACGGCCGCCCACGACACCGTCCCGATGAGCATCTTC 660
consensus_4844#1      CGCGCGATCCGCGCCGCCTCCGCCACGGCCGCCCACGACACCGTCCCGATGAGCATCTTC 60
                      ************************************************************

consensus_4844#0      TGGATGCTGCCGCAGTACATCCTCATCGGCGTCGGCGACGTGTTCAGCTCCGTCGGCATC 720
consensus_4844#1      TGGATGCTGCCGCAGTACATCCTCATCGGCGTCGGCGACGTGTTCAGCTCCGTCGGCATC 120
                      ************************************************************

consensus_4844#0      CTCGAGTTCTTCTACGAGCAGTCGCCGCAGGGGATGCAGAGCCTCGGCACCACCTTCTTC 780
consensus_4844#1      CTCGAGTTCTTCTACGAGCAGTCGCCGCAGGGGATGCAGAGCCTCGGCACCACCTTTTTC 180
                      ******************************************************** ***

consensus_4844#0      ACCAGCGGCCTCGGCGTCGGAAACTTCCTCAACAGCCTGCTCGTCACCGCCGTCGACCGC 840
consensus_4844#1      ACCAGCGGCCTCGGCGTCGGAAACTTCCTCAACAGCCTGCTTGTCACCGCCGTCGACCGC 240
                      ***************************************** ******************

consensus_4844#0      GCCACCAGGGGCGGCGGCGCCGGCAAGAGCTGGATCGGCGACAACCTCAACGACTCGCAC 900
consensus_4844#1      GCCACCAGGGGCGGCGGCGCCGGCAAGAGCTGGATCGGCGACAACCTCAACGACTCGCAC 300
                      ************************************************************

consensus_4844#0      CTCGACTACTACTACGCCTTCCTGCTGCTGCTCGCGGTGATCAACCTGGCGGTGTTCGTG 960
consensus_4844#1      CTCGACTACTACTACGCCTTCCTGCTGCTGCTCGCGGTGATCAACCTGGCGGTGTTCGTG 360
                      ************************************************************

consensus_4844#0      TGGGTGGCGACGAGGTACGAGTACAAGAAGGAGTACTTGTCGGACGGCGGGGACGTCGTC 1020
consensus_4844#1      TGGGTGGCGACGAGGTACGAGTACAAGAAGGAGTACTTGTCGGACGGCGGGGACGTCGTC 420
                      ************************************************************

consensus_4844#0      GCCGGGATGGCGTCGCGGGAGACGGAGATGGCCGGCGGCGGCAAGGGGAAGGTGGTGGAG 1080
consensus_4844#1      GCCGGGATGGCGTCGCGGGAGACGGAGATGGCCGGCGGCGGCAAGGGGAAGGTGGTGGAG 480
                      ************************************************************

consensus_4844#0      AGGAGCAAGGTGATCGACGCGCCATTGGTGGTGGTGGAAGAAGTGCGTGCCGTATAATTT 1140
consensus_4844#1      AGGAGCAAGGTGATCGACGCGCCATTGGTGGTGGTGGAAGAAGTGCGTGCCGTATAATTT 540
                      ************************************************************

consensus_4844#0      GCGGTTCATACTGAGTAACTTGGTATAGAACTATAGATCATCAGCATATACGTACGGAAT 1200
consensus_4844#1      GCGGTTCATACTGAGTAACTTGGTATAGAACTATAGATCATCAGCATATACGTACGGAAT 600
                      ************************************************************

consensus_4844#0      ACACGTATAAAACTATATATACGT-ATATAATGGACCATACATGGGTTGAAATTCGGGTT 1259
consensus_4844#1      ACACGTATAAAACTATATATAAGGGATATAATGGACCATACATGGGTTGAAAA--AAAAT 658
                      ********************* *  ***************************       *

consensus_4844#0      AAGCAATATGGAAATGCCACGTACCATAATCCCGTCCGGACGGGATCCCTTT 1311
consensus_4844#1      AAAAA----------------------------------------------- 663
                      **  *