cluster # 4848

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Oryza sativa
cluster # 4848 cluster # 4848 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4848#0 length = 632 sequences # 1

consensus_4848#1 length = 621 sequences # 1
consensus_4848#2 length = 508 sequences # 1

consensusID : consensus_4848#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence

                              [CGTTCCATCCCGTCGAGCTCGCGGAACCAGCCGGCGCCATCGCCACCTTGCTGTCCGGTTGCTCATCTTTCCTCTCCTCTTCAGTGCTGCTTGGAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGTGCTCACTTTCTGGACTTAATTTGTTTTTGTCATAGATCACGAACACACTGAGAGATATAAATACGAGGGTTCGTATTGTTCTAGATCTTGTATGAGCATGCAGCTTGTAAGTGCAAACATTTTGCATTATATCATACTGTTAAGGAGAAGGCAAAAAGCTATCTAAAGTGATCATCATGTATTTCATGTTTCCATCAGCCAGGTGCCCAGGTGTTTTGCCACAGGACATATCAGGACACATGTGTGCTCTGTTATATAACTTTTGACTTAAAGGAGTTGTGCTACAAGATAAATCGTTTGTCTCATCTGTATGCCTTCGATGCCTATTATGTGAGTCTTAACTATTTGAATTACCAACTGACCACCCTCGTCTATTCTCTTGTCTAATAAAATAGTGTATTTTACATATATTATATGGCTTACTGAACTTTCAGTATAATTTTTGTTGTCATCAGAAATATTGAAACATATATATTCATATTACAAAAAAA]

[+] EMBL CB678864             [CGTTCCATCCCGTCGAGCTCGCGGAACCAGCCGGCGCCATCGCCACCTTGCTGTCCGGTTGCTCATCTTTCCTCTCCTCTTCAGTGCTGCTTGGAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGTGCTCACTTTCTGGACTTAATTTGTTTTTGTCATAGATCACGAACACACTGAGAGATATAAATACGAGGGTTCGTATTGTTCTAGATCTTGTATGAGCATGCAGCTTGTAAGTGCAAACATTTTGCATTATATCATACTGTTAAGGAGAAGGCAAAAAGCTATCTAAAGTGATCATCATGTATTTCATGTTTCCATCAGCCAGGTGCCCAGGTGTTTTGCCACAGGACATATCAGGACACATGTGTGCTCTGTTATATAACTTTTGACTTAAAGGAGTTGTGCTACAAGATAAATCGTTTGTCTCATCTGTATGCCTTCGATGCCTATTATGTGAGTCTTAACTATTTGAATTACCAACTGACCACCCTCGTCTATTCTCTTGTCTAATAAAATAGTGTATTTTACATATATTATATGGCTTACTGAACTTTCAGTATAATTTTTGTTGTCATCAGAAATATTGAAACATATATATTCATATTACAAAAAAA]




>consensus_4848#0
CGTTCCATCCCGTCGAGCTCGCGGAACCAGCCGGCGCCATCGCCACCTTGCTGTCCGGTT
GCTCATCTTTCCTCTCCTCTTCAGTGCTGCTTGGAGATTAGGATCACAGATGTTTGAGCA
AGCAGTAAATCGACAGAAGGTGCTCACTTTCTGGACTTAATTTGTTTTTGTCATAGATCA
CGAACACACTGAGAGATATAAATACGAGGGTTCGTATTGTTCTAGATCTTGTATGAGCAT
GCAGCTTGTAAGTGCAAACATTTTGCATTATATCATACTGTTAAGGAGAAGGCAAAAAGC
TATCTAAAGTGATCATCATGTATTTCATGTTTCCATCAGCCAGGTGCCCAGGTGTTTTGC
CACAGGACATATCAGGACACATGTGTGCTCTGTTATATAACTTTTGACTTAAAGGAGTTG
TGCTACAAGATAAATCGTTTGTCTCATCTGTATGCCTTCGATGCCTATTATGTGAGTCTT
AACTATTTGAATTACCAACTGACCACCCTCGTCTATTCTCTTGTCTAATAAAATAGTGTA
TTTTACATATATTATATGGCTTACTGAACTTTCAGTATAATTTTTGTTGTCATCAGAAAT
ATTGAAACATATATATTCATATTACAAAAAAA

consensusID : consensus_4848#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence

                              [GCAGATCTAATTGGCGCTGCTGCCTCCCCACGGAGCTCCATCTCGCGAAGCTACTTGGCGCCGCCACCGCGGTGTTCCGCCCCGTCGAGCTCGCGGGGCTGGCCGGCGCCCTTGCCACCTTGCCGTCCAGCTCGCAGAGCTGCTCGGCGCTGCAGCGGCGTTCCATCCCGTCGGCCTCGCGGAACCAGCCGGCGCCATCGCCACCTTTCTGTCTGGCTGCTCAGCGGCGCCGCCCCCGCGGTATTGCACCCCGTCGAGCTCGCGCAGCTGGCCGGCGCCATTGCCACCTTGCCGTCCAGCTCGCAGAACTGCTCGGCGCTGCAGCGGCGTTCCATCCCGTCGAGCTCGCGGAACCAGCCGGCGCCATCGCCACCTTGCTGTCCGGTTGCTCAGCTTTCCTCTCCTCTTCAGTGCTGCTTGGAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGTGCTCACTTTCTGGACTTAATTTGTTTTTGTCATAGATCACGAACACACTGAGAGATATAAATACGAGGGTTCGTATGTAAGTTGTATCTTACCAACTATTTACCAGTTTGTCAAGTGGGTGCTAATCTCTGGTTAAAAGAAAATAATATGATT]

[+] EMBL AK068141             [GCAGATCTAATTGGCGCTGCTGCCTCCCCACGGAGCTCCATCTCGCGAAGCTACTTGGCGCCGCCACCGCGGTGTTCCGCCCCGTCGAGCTCGCGGGGCTGGCCGGCGCCCTTGCCACCTTGCCGTCCAGCTCGCAGAGCTGCTCGGCGCTGCAGCGGCGTTCCATCCCGTCGGCCTCGCGGAACCAGCCGGCGCCATCGCCACCTTTCTGTCTGGCTGCTCAGCGGCGCCGCCCCCGCGGTATTGCACCCCGTCGAGCTCGCGCAGCTGGCCGGCGCCATTGCCACCTTGCCGTCCAGCTCGCAGAACTGCTCGGCGCTGCAGCGGCGTTCCATCCCGTCGAGCTCGCGGAACCAGCCGGCGCCATCGCCACCTTGCTGTCCGGTTGCTCAGCTTTCCTCTCCTCTTCAGTGCTGCTTGGAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGTGCTCACTTTCTGGACTTAATTTGTTTTTGTCATAGATCACGAACACACTGAGAGATATAAATACGAGGGTTCGTATGTAAGTTGTATCTTACCAACTATTTACCAGTTTGTCAAGTGGGTGCTAATCTCTGGTTAAAAGAAAATAATATGATT]




>consensus_4848#1
GCAGATCTAATTGGCGCTGCTGCCTCCCCACGGAGCTCCATCTCGCGAAGCTACTTGGCG
CCGCCACCGCGGTGTTCCGCCCCGTCGAGCTCGCGGGGCTGGCCGGCGCCCTTGCCACCT
TGCCGTCCAGCTCGCAGAGCTGCTCGGCGCTGCAGCGGCGTTCCATCCCGTCGGCCTCGC
GGAACCAGCCGGCGCCATCGCCACCTTTCTGTCTGGCTGCTCAGCGGCGCCGCCCCCGCG
GTATTGCACCCCGTCGAGCTCGCGCAGCTGGCCGGCGCCATTGCCACCTTGCCGTCCAGC
TCGCAGAACTGCTCGGCGCTGCAGCGGCGTTCCATCCCGTCGAGCTCGCGGAACCAGCCG
GCGCCATCGCCACCTTGCTGTCCGGTTGCTCAGCTTTCCTCTCCTCTTCAGTGCTGCTTG
GAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGTGCTCACTTTCTG
GACTTAATTTGTTTTTGTCATAGATCACGAACACACTGAGAGATATAAATACGAGGGTTC
GTATGTAAGTTGTATCTTACCAACTATTTACCAGTTTGTCAAGTGGGTGCTAATCTCTGG
TTAAAAGAAAATAATATGATT

consensusID : consensus_4848#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence

                              [TGCTGCTTGGAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGGCTGTTAATCTGGTGCTTCCTTATATCTTTTTGCAGTGTTCTAGATCTTGTAGGAGCATGCAGCTTGTAAGTGCAAACATTTTGCATTATATCATACTGTTAAGGAGAAGGCCAAAAGCTATCTAAAGTGATCATCATGTATTTCATGTTTCCATCAGCCAGGTGCCCAGGTGTTTTGCCAGAGGACATATCAGGACACATGTGTGCTCTGTTATATAACTTTTGACTTAAAGGAGTTGTGCTACAAGATAAATCGTTTGTCTCATCTGTATGCCTTCGATGCCTATTATGTGAGTCTTAACTATTTGAATTACCAACTGACCACCCTCGTCGATTCTCTTGTCTAATAAATAGTGTATTTTACATATATTATATGGCTTAGTGAACTTTCAGTATAATTTTTGTTGTCATCAGAAATATTTGAAACATATATATTCATATTCATACTAAAA]

[+] EMBL BI806818             [TGCTGCTTGGAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGGCTGTTAATCTGGTGCTTCCTTATATCTTTTTGCAGTGTTCTAGATCTTGTAGGAGCATGCAGCTTGTAAGTGCAAACATTTTGCATTATATCATACTGTTAAGGAGAAGGCCAAAAGCTATCTAAAGTGATCATCATGTATTTCATGTTTCCATCAGCCAGGTGCCCAGGTGTTTTGCCAGAGGACATATCAGGACACATGTGTGCTCTGTTATATAACTTTTGACTTAAAGGAGTTGTGCTACAAGATAAATCGTTTGTCTCATCTGTATGCCTTCGATGCCTATTATGTGAGTCTTAACTATTTGAATTACCAACTGACCACCCTCGTCGATTCTCTTGTCTAATAAATAGTGTATTTTACATATATTATATGGCTTAGTGAACTTTCAGTATAATTTTTGTTGTCATCAGAAATATTTGAAACATATATATTCATATTCATACTAAAA]




>consensus_4848#2
TGCTGCTTGGAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGGCTG
TTAATCTGGTGCTTCCTTATATCTTTTTGCAGTGTTCTAGATCTTGTAGGAGCATGCAGC
TTGTAAGTGCAAACATTTTGCATTATATCATACTGTTAAGGAGAAGGCCAAAAGCTATCT
AAAGTGATCATCATGTATTTCATGTTTCCATCAGCCAGGTGCCCAGGTGTTTTGCCAGAG
GACATATCAGGACACATGTGTGCTCTGTTATATAACTTTTGACTTAAAGGAGTTGTGCTA
CAAGATAAATCGTTTGTCTCATCTGTATGCCTTCGATGCCTATTATGTGAGTCTTAACTA
TTTGAATTACCAACTGACCACCCTCGTCGATTCTCTTGTCTAATAAATAGTGTATTTTAC
ATATATTATATGGCTTAGTGAACTTTCAGTATAATTTTTGTTGTCATCAGAAATATTTGA
AACATATATATTCATATTCATACTAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4848#0      CGTTCCATCCCGTCGAGCTCGCGGAACCAGCCGGCGCCATCGCCACCTTGCTGTCCGGTT 60
consensus_4848#2      ------------------------------------------------------------
consensus_4848#1      ------------------------------------------------------------
                                                                                  

consensus_4848#0      GCTCATCTTTCCTCTCCTCTTCAGTGCTGCTTGGAGATTAGGATCACAGA--TGTTTGA- 117
consensus_4848#2      ------------------------TGCTGCTTGGAGATTAGGATCACAGA--TGTTTGA- 33
consensus_4848#1      -GCAGATCTAATTGGCGCTGCTGCCTCCCCACGGAGCTCCATCTCGCGAAGCTACTTGGC 59
                                                *  *  **** *     ** *  *  *  ***  

consensus_4848#0      GCAAGCAGTAAATCGACAGAAGGTGCTCACTTTCTGGACTTAATTTGTTTTTGTCATAGA 177
consensus_4848#2      GCAAGCAGTAAATCGACAGAAGG-GCTG-----------TTAATCTGGTGCTTCCTTATA 81
consensus_4848#1      GCCGCCACCGCGGTGTTCCGCCCCGTCGAGCTCGCGGGGCTGGCCGGCGCCCTTGCCACC 119
                      **   **       *         *               *     *          *  

consensus_4848#0      TCACGAACACACTGAGAGATATAAATACGAGGGTTCGTATTGTTCTAGATCTTGTATGAG 237
consensus_4848#2      TCTT-----------------------------TTTGCAGTGTTCTAGATCTTGTAGGAG 112
consensus_4848#1      TTGCCGTCCAGCTCGCAGAGCTGC-TCGGCGCTGCAGCGGCGTTCCA--TCCCGTCGGCC 176
                      *                                   *    **** *  **  **  *  

consensus_4848#0      -CATGCAGCTTGTAAGTGCAAACATTTTGCATTATATCATACTGTTAAGGAGAA--GGCA 294
consensus_4848#2      -CATGCAGCTTGTAAGTGCAAACATTTTGCATTATATCATACTGTTAAGGAGAA--GGCC 169
consensus_4848#1      TCGCGGAACCAGCCGGCGCCATCGCCAC-CTTTCTGTCTGGCTGCTCAGCGGCGCCGCCC 235
                       *  * * *  *   * ** * *      * ** * **   *** * **  *    * * 

consensus_4848#0      AAAAGCTATCTAAAGTGATCA---TCATGTATTTCAT-GTTTCCATCAGCCAGGTGCCCA 350
consensus_4848#2      AAAAGCTATCTAAAGTGATCA---TCATGTATTTCAT-GTTTCCATCAGCCAGGTGCCCA 225
consensus_4848#1      CCGCGGTATTGCACCCCGTCGAGCTCGCGCAGCTGGCCGGCGCCATT-GCCACCTTGCCG 294
                          * ***   *     **    **  * *  *    *   ****  ****  *  ** 

consensus_4848#0      GGTGTTTTGCCACAGGACATATCAGGACACATGTGTGCTCTGTTATATAACTTTTG--AC 408
consensus_4848#2      GGTGTTTTGCCAGAGGACATATCAGGACACATGTGTGCTCTGTTATATAACTTTTG--AC 283
consensus_4848#1      TCCAGCTCGCAGAACTGCTCGGCGCTGCAGCGGCGTTCCATCCCGTCGAGCTCGCGGAAC 354
                            * **   *   *    *    **   * ** *  *    *  * **   *  **

consensus_4848#0      TTAAAGGAGTTGT-GCTACAAGATAAATCGTTTGTCTCATCTGTATGC----CTTCGATG 463
consensus_4848#2      TTAAAGGAGTTGT-GCTACAAGATAAATCGTTTGTCTCATCTGTATGC----CTTCGATG 338
consensus_4848#1      CAGCCGGCGCCATCGCCACCTTGCTGTCCGGTTG-CTCAGCTTTCCTCTCCTCTTCAGTG 413
                           ** *   * ** **         ** *** **** ** *   *    ****  **

consensus_4848#0      CCTATT----ATGTGAGTCTTAACTATTTGAATTACCAACTGACCACCCTCGTCTATTCT 519
consensus_4848#2      CCTATT----ATGTGAGTCTTAACTATTTGAATTACCAACTGACCACCCTCGTCGATTCT 394
consensus_4848#1      CTGCTTGGAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGTGCTCA 473
                      *   **    **  *  **  *  * *****   * **    * *  *         ** 

consensus_4848#0      CTTGTCTAATAAAATAGTGTATTTTACATATATTATATG-GCTTACTGAACTTTCAGTAT 578
consensus_4848#2      CTTGTCTAATAAA-TAGTGTATTTTACATATATTATATG-GCTTAGTGAACTTTCAGTAT 452
consensus_4848#1      CTTTCTGGACTTAATT-TGTTTTTGTCATAGATCACGAACACACTGAGAGATATAAATAC 532
                      ***     *   * *  *** ***  **** ** *      *     **  * * * ** 

consensus_4848#0      AATT-TTTGT-TGTCATCAGAAATATT-GAAACATATA-----TATTCATATT-ACAAAA 629
consensus_4848#2      AATT-TTTGT-TGTCATCAGAAATATTTGAAACATATA-----TATTCATATTCATACTA 505
consensus_4848#1      GAGGGTTCGTATGTAAGTTGTATCTTACCAACTATTTACCAGTTTGTCAAGTGGGTGCTA 592
                       *   ** ** *** *   * *   *   **  ** **     *  ***  *       *

consensus_4848#0      AAA-------------------------- 632
consensus_4848#2      AAA-------------------------- 508
consensus_4848#1      ATCTCTGGTTAAAAGAAAATAATATGATT 621
                      *