cluster # 4849

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Oryza sativa
cluster # 4849 cluster # 4849 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4849#0 length = 969 sequences # 2

consensus_4849#1 length = 660 sequences # 1

consensusID : consensus_4849#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 969
fasta sequence

                              [CTCCCACATCCTCGGCGCGAGACGTGAACGAAACGTCCCAAGCCTACCGCCGCCGCGAGGATCTCTCGAATCGCGCAACTCACAGCAGAGGGAGAGGAAGAAGCCGAGCGCCATGGACGCCCTCGTCTGCACCAACGCCTTCGCCACCGCCATCGCCGCCGGCAGGTTTCCCCTCCCGCGAGGCCGCTCGCCCCCGTACGCCGCGGCAGCCGTCCCCGCCCTCCGCTCCCGCCGCTGCCTCCCGACTCGAGGGCTGCTACGCCTGCGCTGCGCCAGGGGGGTGGATTGGACTGATCCGTCGTTCGTGGCAGTCGCGGAGAAGCCCGACGCGGGGGCGGAGGCATGGAAGGCGCTCGCATCCGCGGGCGGCGGTGGCATCGAGGAGGAGGAGGATGGCCCGTTTGAGGCGATCAACGGTGATGGAGGATACTCGGTGGAGGAGTCTGTGGTCTTGCCGCCATTCGAGCAGAGCTTGGTGGCGGCGGTGGCGGACAGTGTCGAGGACGATGCGCTCAGTCAGGCGCTCAGCTCTAAGTTGGATTTCAAGGAGACGTCTACTTTTGTCATGTATGGCAGTGGTGCTTTCATTGCCGGATGGATTTTGTCTGCTGTTGTTTCAGCAATTGATTCCATTCCCTTGTTCCCAAAGATACTGCAAATTGTAGGCCTTGGCTACACAATTTGGTTCAGCACACGGTATCTTCTTTTCAAGGAAAACAGAGATGAACTGTTTGTTAAAGTTGATGATCTCAAAAGGAAAATTACTGGGTATGGTGATGAATAATGTGTTAGAATGAGGCTGGACTTTAGTTTCGTCTTGTGTTTAGTTAGATTTTTTTTATCATGCTACAAAATTGCAATGCCTGTGCAATTATATGTATTGTTATCGGCTATTTGTAATGAATGAATATTCTTTGCCAACAAATCGAGCAGTCATCTGCTGTTTTGAATAGTGAAAAAAACAAAAAA]

[+] EMBL AK062617             [CTCCCACATCCTCGGCGCGAGACGTGAACGAAACGTCCCAAGCCTACCGCCGCCGCGAGGATCTCTCGAATCGCGCAACTCACAGCAGAGGGAGAGGAAGAAGCCGAGCGCCATGGACGCCCTCGTCTGCACCAACGCCTTCGCCACCGCCATCGCCGCCGGCAGGTTTCCCCTCCCGCGAGGCCGCTCGCCCCCGTACGCCGCGGCAGCCGTCCCCGCCCTCCGCTCCCGCCGCTGCCTCCCGACTCGAGGGCTGCTACGCCTGCGCTGCGCCAGGGGGGTGGATTGGACTGATCCGTCGTTCGTGGCAGTCGCGGAGAAGCCCGACGCGGGGGCGGAGGCATGGAAGGCGCTCGCATCCGCGGGCGGCGGTGGCATCGAGGAGGAGGAGGATGGCCCGTTTGAGGCGATCAACGGTGATGGAGGATACTCGGTGGAGGAGTCTGTGGTCTTGCCGCCATTCGAGCAGAGCTTGGTGGCGGCGGTGGCGGACAGTGTCGAGGACGATGCGCTCAGTCAGGCGCTCAGCTCTAAGTTGGATTTCAAGGAGACGTCTACTTTTGTCATGTATGGCAGTGGTGCTTTCATTGCCGGATGGATTTTGTCTGCTGTTGTTTCAGCAATTGATTCCATTCCCTTGTTCCCAAAGATACTGCAAATTGTAGGCCTTGGCTACACAATTTGGTTCAGCACACGGTATCTTCTTTTCAAGGAAAACAGAGATGAACTGTTTGTTAAAGTTGATGATCTCAAAAGGAAAATTACTGGGTATGGTGATGAATAATGTGTTAGAATGAGGCTGGACTTTAGTTTCGTCTTGTGTTTAGTTAGATTTTTTTTATCATGCTACAAAATTGCAATGCCTGTGCAATTATATGTATTGTTATCGGCTATTTGTAATGAATGAATATTCTTTGCCAACAAATCGAGCAGTCATCTGCTGTT                        ]
[+] EMBL CB681075             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGTATGGCAGTGGTGCTTTCATTGCCGGATGGATTTTGTCTGCTGTTGTTTCAGCAATTGATTCCATTCCCTTGTTCCCAAAGATACTGCAAATTGTAGGCCTTGGCTACACAATTTGGTTCAGCACACGGTATCTTCTTTTCAAGGAAAACAGAGATGAACTGCTTGTTAAAGTTGATGATCTCAAAAGGAAAATTACTGGGTATGGTGATGAATAATGTGTTAAAATGAAGCTGGACTTTACTTTCCTCTTGTGTTTAGTTAGATTTTTTTTATCATGCTACAAAATTGCAATGCCTGTGCAATTATATGTATTGTTATCCGCTATTTGTAATGAATGAATATTCTTTGCCAACAAATCGAGCAGTCATCTGCTGTTTTGAATAGTGAAAAAAACAAAAAA]




>consensus_4849#0
CTCCCACATCCTCGGCGCGAGACGTGAACGAAACGTCCCAAGCCTACCGCCGCCGCGAGG
ATCTCTCGAATCGCGCAACTCACAGCAGAGGGAGAGGAAGAAGCCGAGCGCCATGGACGC
CCTCGTCTGCACCAACGCCTTCGCCACCGCCATCGCCGCCGGCAGGTTTCCCCTCCCGCG
AGGCCGCTCGCCCCCGTACGCCGCGGCAGCCGTCCCCGCCCTCCGCTCCCGCCGCTGCCT
CCCGACTCGAGGGCTGCTACGCCTGCGCTGCGCCAGGGGGGTGGATTGGACTGATCCGTC
GTTCGTGGCAGTCGCGGAGAAGCCCGACGCGGGGGCGGAGGCATGGAAGGCGCTCGCATC
CGCGGGCGGCGGTGGCATCGAGGAGGAGGAGGATGGCCCGTTTGAGGCGATCAACGGTGA
TGGAGGATACTCGGTGGAGGAGTCTGTGGTCTTGCCGCCATTCGAGCAGAGCTTGGTGGC
GGCGGTGGCGGACAGTGTCGAGGACGATGCGCTCAGTCAGGCGCTCAGCTCTAAGTTGGA
TTTCAAGGAGACGTCTACTTTTGTCATGTATGGCAGTGGTGCTTTCATTGCCGGATGGAT
TTTGTCTGCTGTTGTTTCAGCAATTGATTCCATTCCCTTGTTCCCAAAGATACTGCAAAT
TGTAGGCCTTGGCTACACAATTTGGTTCAGCACACGGTATCTTCTTTTCAAGGAAAACAG
AGATGAACTGTTTGTTAAAGTTGATGATCTCAAAAGGAAAATTACTGGGTATGGTGATGA
ATAATGTGTTAGAATGAGGCTGGACTTTAGTTTCGTCTTGTGTTTAGTTAGATTTTTTTT
ATCATGCTACAAAATTGCAATGCCTGTGCAATTATATGTATTGTTATCGGCTATTTGTAA
TGAATGAATATTCTTTGCCAACAAATCGAGCAGTCATCTGCTGTTTTGAATAGTGAAAAA
AACAAAAAA

consensusID : consensus_4849#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 660
fasta sequence

                              [GTNGCATTCCCGAAAACCGACCGGGGCCGGAGCATGGAAGCGCTCGCATCCCGGGCGCGGTGNCATCGAGGAGAGGAGGAGGAGGATGGCCCTTTGAGCGATCAAACGTTGAGGGAGATACTCGGTGGAGGAGTCTGTTGTCTTGCCCCATTCGACAGAGCTTGTGCGCGGTGCGGACAGTGTCGGGGACGATGCGCTCAGTCAGGCGCTCAGCTCTAAGTTGGATTTCAAGGAGACGTCTACTTTTGTCATGTATGGCAGTGGTGCTTTCATTCCGGATGGATTTTGTCTGCTGTTGTTTCAGCATTGATTCCATTCCCTTGTTCCCAAGATACTGCAATTGTAGGCCTTGGCTACACATTTGGTTCAGCACACGGTATCTTCTTTTCAAGGAAAACAGAGATGAACTGTTTGTTAAAGTTGATGATCTCAAAGGAAAATTACTGGGTATGGTGATGAATAGTGTGTTAGAATGAAGCTGGACTTTAGTTTCGTCTTGTGTTTAGTTAGATTTTTTTTATCATGCTACAAATTGCATGCCTGTGCATTATATGTATTGTTATCGGCTATTTGTAATGAATGAATATTCTTTGCCACAATCGACAGTCATCTGCTGTTTTGAATAGTGCAATGGTCGGTCCCTCCTTTTTAAAAAAAAAA]

[+] EMBL BI806076             [GTNGCATTCCCGAAAACCGACCGGGGCCGGAGCATGGAAGCGCTCGCATCCCGGGCGCGGTGNCATCGAGGAGAGGAGGAGGAGGATGGCCCTTTGAGCGATCAAACGTTGAGGGAGATACTCGGTGGAGGAGTCTGTTGTCTTGCCCCATTCGACAGAGCTTGTGCGCGGTGCGGACAGTGTCGGGGACGATGCGCTCAGTCAGGCGCTCAGCTCTAAGTTGGATTTCAAGGAGACGTCTACTTTTGTCATGTATGGCAGTGGTGCTTTCATTCCGGATGGATTTTGTCTGCTGTTGTTTCAGCATTGATTCCATTCCCTTGTTCCCAAGATACTGCAATTGTAGGCCTTGGCTACACATTTGGTTCAGCACACGGTATCTTCTTTTCAAGGAAAACAGAGATGAACTGTTTGTTAAAGTTGATGATCTCAAAGGAAAATTACTGGGTATGGTGATGAATAGTGTGTTAGAATGAAGCTGGACTTTAGTTTCGTCTTGTGTTTAGTTAGATTTTTTTTATCATGCTACAAATTGCATGCCTGTGCATTATATGTATTGTTATCGGCTATTTGTAATGAATGAATATTCTTTGCCACAATCGACAGTCATCTGCTGTTTTGAATAGTGCAATGGTCGGTCCCTCCTTTTTAAAAAAAAAA]




>consensus_4849#1
GTNGCATTCCCGAAAACCGACCGGGGCCGGAGCATGGAAGCGCTCGCATCCCGGGCGCGG
TGNCATCGAGGAGAGGAGGAGGAGGATGGCCCTTTGAGCGATCAAACGTTGAGGGAGATA
CTCGGTGGAGGAGTCTGTTGTCTTGCCCCATTCGACAGAGCTTGTGCGCGGTGCGGACAG
TGTCGGGGACGATGCGCTCAGTCAGGCGCTCAGCTCTAAGTTGGATTTCAAGGAGACGTC
TACTTTTGTCATGTATGGCAGTGGTGCTTTCATTCCGGATGGATTTTGTCTGCTGTTGTT
TCAGCATTGATTCCATTCCCTTGTTCCCAAGATACTGCAATTGTAGGCCTTGGCTACACA
TTTGGTTCAGCACACGGTATCTTCTTTTCAAGGAAAACAGAGATGAACTGTTTGTTAAAG
TTGATGATCTCAAAGGAAAATTACTGGGTATGGTGATGAATAGTGTGTTAGAATGAAGCT
GGACTTTAGTTTCGTCTTGTGTTTAGTTAGATTTTTTTTATCATGCTACAAATTGCATGC
CTGTGCATTATATGTATTGTTATCGGCTATTTGTAATGAATGAATATTCTTTGCCACAAT
CGACAGTCATCTGCTGTTTTGAATAGTGCAATGGTCGGTCCCTCCTTTTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4849#0      CTCCCACATCCTCGGCGCGAGACGTGAACGAAACGTCCCAAGCCTACCGCCGCCGCGAGG 60
consensus_4849#1      ------------------------------------------------------------
                                                                                  

consensus_4849#0      ATCTCTCGAATCGCGCAACTCACAGCAGAGGGAGAGGAAGAAGCCGAGCGCCATGGACGC 120
consensus_4849#1      ------------------------------------------------------------
                                                                                  

consensus_4849#0      CCTCGTCTGCACCAACGCCTTCGCCACCGCCATCGCCGCCGGCAGGTTTCCCCTCCCGCG 180
consensus_4849#1      ------------------------------------------------------------
                                                                                  

consensus_4849#0      AGGCCGCTCGCCCCCGTACGCCGCGGCAGCCGTCCCCGCCCTCCGCTCCCGCCGCTGCCT 240
consensus_4849#1      ------------------------------------------------------------
                                                                                  

consensus_4849#0      CCCGACTCGAGGGCTGCTACGCCTGCGCTGCGCCAGGGGGGTGGATTGGACTGATCCGTC 300
consensus_4849#1      ------------------------------------------------------------
                                                                                  

consensus_4849#0      GTTCGTGGCAGTCGCGGAGAAGCCCGACGCGGGGGCGGAGGCATGGAAGGCGCTCGCATC 360
consensus_4849#1      ----GTNGCATTCCCGAAAA---CCGAC-CGGGGCCGGAG-CATGGAAG-CGCTCGCATC 50
                          ** *** ** ** * *   ***** ***** ***** ******** **********

consensus_4849#0      CGCGGGCGGCGGTGGCATCGAGGAG-----GAGGAGGATGGCCCGTTTGAGGCGATCAAC 415
consensus_4849#1      C-CGGGCG-CGGTGNCATCGAGGAGAGGAGGAGGAGGATGGCCC-TTTGAG-CGATCAAA 106
                      * ****** ***** **********     ************** ****** ******* 

consensus_4849#0      GGTGATGGAGGATACTCGGTGGAGGAGTCTGTGGTCTTGCCGCCATTCGAGCAGAGCTTG 475
consensus_4849#1      CGTTGAGGGAGATACTCGGTGGAGGAGTCTGTTGTCTTGCC-CCATTCGA-CAGAGCTTG 164
                       **   **  ********************** ******** ******** *********

consensus_4849#0      GTGGCGGCGGTGGCGGACAGTGTCGAGGACGATGCGCTCAGTCAGGCGCTCAGCTCTAAG 535
consensus_4849#1      TGCGCGGTG----CGGACAGTGTCGGGGACGATGCGCTCAGTCAGGCGCTCAGCTCTAAG 220
                         **** *    ************ **********************************

consensus_4849#0      TTGGATTTCAAGGAGACGTCTACTTTTGTCATGTATGGCAGTGGTGCTTTCATTGCCGGA 595
consensus_4849#1      TTGGATTTCAAGGAGACGTCTACTTTTGTCATGTATGGCAGTGGTGCTTTCATT-CCGGA 279
                      ****************************************************** *****

consensus_4849#0      TGGATTTTGTCTGCTGTTGTTTCAGCAATTGATTCCATTCCCTTGTTCCCAAAGATACTG 655
consensus_4849#1      TGGATTTTGTCTGCTGTTGTTTCAGCA-TTGATTCCATTCCCTTGTTCCCAA-GATACTG 337
                      *************************** ************************ *******

consensus_4849#0      CAAATTGTAGGCCTTGGCTACACAATTTGGTTCAGCACACGGTATCTTCTTTTCAAGGAA 715
consensus_4849#1      CAA-TTGTAGGCCTTGGCTACACA-TTTGGTTCAGCACACGGTATCTTCTTTTCAAGGAA 395
                      *** ******************** ***********************************

consensus_4849#0      AACAGAGATGAACTGTTTGTTAAAGTTGATGATCTCAAAAGGAAAATTACTGGGTATGGT 775
consensus_4849#1      AACAGAGATGAACTGTTTGTTAAAGTTGATGATCTCAAA-GGAAAATTACTGGGTATGGT 454
                      *************************************** ********************

consensus_4849#0      GATGAATAATGTGTTAGAATGAGGCTGGACTTTAGTTTCGTCTTGTGTTTAGTTAGATTT 835
consensus_4849#1      GATGAATAGTGTGTTAGAATGAAGCTGGACTTTAGTTTCGTCTTGTGTTTAGTTAGATTT 514
                      ******** ************* *************************************

consensus_4849#0      TTTTTATCATGCTACAAAATTGCAATGCCTGTGCAATTATATGTATTGTTATCGGCTATT 895
consensus_4849#1      TTTTTATCATGCTACAAA-TTGCA-TGCCTGTGCA-TTATATGTATTGTTATCGGCTATT 571
                      ****************** ***** ********** ************************

consensus_4849#0      TGTAATGAATGAATATTCTTTGCCAACAAATCGAGCAGTCATCTGCTGTTTTGAATAGTG 955
consensus_4849#1      TGTAATGAATGAATATTCTTTGCCAC--AATCGA-CAGTCATCTGCTGTTTTGAATAGTG 628
                      *************************   ****** *************************

consensus_4849#0      AAAAAAACAAAAAA------------------ 969
consensus_4849#1      CAATGGTCGGTCCCTCCTTTTTAAAAAAAAAA 660
                       **    *