cluster # 4851

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Oryza sativa
cluster # 4851 cluster # 4851 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4851#0 length = 415 sequences # 2

consensus_4851#1 length = 306 sequences # 1

consensusID : consensus_4851#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 415
fasta sequence

                              [AGCCATGGCCGCCGCTCCTATCACGCTGCTCGTGCTGTCACTCCTCCTCCTCGCCGTCGCCGCCGCCACCGCCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGCGTCGAGGACGCCGGCGCGGCGGCCGGCGAGGCGGCCGGCGCCAACGCCGCCTCGAACATCGCCGCCGGCGCCGCGGC-GGGCATGGCCGCGGACGCCGCGG-ACTCGGCGGCGGCGAACATCGGCGCCTATATACCGGAGGCCGGGTACAACCCGGGGAAGCTGTGCGACAACGCGGTGGTGATGGACTCGTGCGTGG-AGGTGCTCCCGAGGATCCCCGGCGCGCTGACGGCGCCGGACTACCGCGCGCTCGCCGTGATCCTGGACGCGTACGCGTGGAAGCTGGTGCAGGGGTCGCGG]

[+] EMBL AU183048             [AGCCATGGCCGCCGCTCCTATCACGCTGCTCGTGCTGTCACTCCTCCTCCTCGCCGTCGCCGCCGCCACCGCCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGCGTCGAGGACGCCGGCGCGGCGGCCGGCGAGGCGGCCGGCGCCAACGCCGCCTCGAACATCGCCGCCGGCGCCGCGGC GGGCATGGCCGCGGACGCCGCGG ACTCGGCGGCGGCGAACATCGGCGCCTATATACCGGAGGCCGGGTACAACCCGGGGAAGCTGTGCGACAACGCGGTGGTGATGGACTCGTGCGTGG AGGTGCTCCCGAGGATCCCCGGCGCGCTGACGGCGCCGGACTACCGCGCGCTCGCCGTGATCCTGGACGCGTACGCGTGGAAGCTGGTGCAGGGGTCGCGG]
[+] EMBL C72030               [ GCCATGGCCGCCGCTCCTATCACGCTGCTCGTGCTGTCACTCCTCCTCCTCGCCGTCGCCGCCGCCACCGCCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGG GTCGCGGACG CGNCGCGGCGGCCGGNGAGGCGGCCGGCGCCAACGNCGCCTCGAACATCGCCGCCGG NCCGCGGCGGGGCATGGCCGCGGACGCNGCGGAACTCGGCGGCGGCGAACATCGGCGCCTATATACCGGA GCCGGGTACAANCCGGGGAAGCTGTNCGACAACGCGGTGGTGATGGACTCGTGCGTGGAAGGTGCTTCCGAaggnt                                                                                    ]




>consensus_4851#0
AGCCATGGCCGCCGCTCCTATCACGCTGCTCGTGCTGTCACTCCTCCTCCTCGCCGTCGC
CGCCGCCACCGCCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGCGT
CGAGGACGCCGGCGCGGCGGCCGGCGAGGCGGCCGGCGCCAACGCCGCCTCGAACATCGC
CGCCGGCGCCGCGGCGGGCATGGCCGCGGACGCCGCGGACTCGGCGGCGGCGAACATCGG
CGCCTATATACCGGAGGCCGGGTACAACCCGGGGAAGCTGTGCGACAACGCGGTGGTGAT
GGACTCGTGCGTGGAGGTGCTCCCGAGGATCCCCGGCGCGCTGACGGCGCCGGACTACCG
CGCGCTCGCCGTGATCCTGGACGCGTACGCGTGGAAGCTGGTGCAGGGGTCGCGG

consensusID : consensus_4851#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 306
fasta sequence

                              [CCTATCACGCTGCTCGTNCTGTCACTCCTCCTCCTCGCCGTCGCCGCCGNCACCGNCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGGTCCGCGGACGGNCGNCGGCGGCCGGCGANGGCGGCCGGCGNCAACGCGNCTCGAACATNGNCGNNGGNCCGCGGGGNGCATGGCCGNGGACGNNGNGGACTCGGCGGGGCGAACATCGGCGCCTATATACCGGAGCCGGGTACAACCNGGGGGAAGCTGTNCGACAACGGGTGGTNATGGACTCGTGCNTGGAAGGTGTTCCGA]

[+] EMBL AU069697             [CCTATCACGCTGCTCGTNCTGTCACTCCTCCTCCTCGCCGTCGCCGCCGNCACCGNCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGGTCCGCGGACGGNCGNCGGCGGCCGGCGANGGCGGCCGGCGNCAACGCGNCTCGAACATNGNCGNNGGNCCGCGGGGNGCATGGCCGNGGACGNNGNGGACTCGGCGGGGCGAACATCGGCGCCTATATACCGGAGCCGGGTACAACCNGGGGGAAGCTGTNCGACAACGGGTGGTNATGGACTCGTGCNTGGAAGGTGTTCCGA]




>consensus_4851#1
CCTATCACGCTGCTCGTNCTGTCACTCCTCCTCCTCGCCGTCGCCGCCGNCACCGNCGCC
ACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGGTCCGCGGACGGNCGNCGG
CGGCCGGCGANGGCGGCCGGCGNCAACGCGNCTCGAACATNGNCGNNGGNCCGCGGGGNG
CATGGCCGNGGACGNNGNGGACTCGGCGGGGCGAACATCGGCGCCTATATACCGGAGCCG
GGTACAACCNGGGGGAAGCTGTNCGACAACGGGTGGTNATGGACTCGTGCNTGGAAGGTG
TTCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4851#0      AGCCATGGCCGCCGCTCCTATCACGCTGCTCGTGCTGTCACTCCTCCTCCTCGCCGTCGC 60
consensus_4851#1      ----------------CCTATCACGCTGCTCGTNCTGTCACTCCTCCTCCTCGCCGTCGC 44
                                      ***************** **************************

consensus_4851#0      CGCCGCCACCGCCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGCGT 120
consensus_4851#1      CGCCGNCACCGNCGCCACATTCCCCACCACCGTGAACGCCTACACCCCCGCCACCGGGTC 104
                      ***** ***** *********************************************   

consensus_4851#0      CGAGGACGCCGGCGCGGCGGCCGGCGAGG-CGGCCGGCGCCAACGCCGCCTCGAACATCG 179
consensus_4851#1      CGCGGACGGNCGN-CGGCGGCCGGCGANGGCGGCCGGCGNCAACGC-GNCTCGAACATNG 162
                      ** *****   *  ************* * ********* ****** * ********* *

consensus_4851#0      CCGCCGGCGCCGCGGCGGGCATGGCCGCGGACGCCGCGGACTCGGCGGCGGCGAACATCG 239
consensus_4851#1      NCGNNGGN-CCGCGGGGNGCATGGCCGNGGACGNNGNGGACTCGGCGG-GGCGAACATCG 220
                       **  **  ****** * ********* *****  * *********** ***********

consensus_4851#0      GCGCCTATATACCGGAGGCCGGGTACAACCCGGGG-AAGCTGTGCGACAACGCGGTGGTG 298
consensus_4851#1      GCGCCTATATACCGGAG-CCGGGTACAACCNGGGGGAAGCTGTNCGACAACG-GGTGGTN 278
                      ***************** ************ **** ******* ******** ****** 

consensus_4851#0      ATGGACTCGTGCGTGGAGGTGCTCCCGAGGATCCCCGGCGCGCTGACGGCGCCGGACTAC 358
consensus_4851#1      ATGGACTCGTGCNTGGAAGGTGTTCCGA-------------------------------- 306
                      ************ **** *   * ****                                

consensus_4851#0      CGCGCGCTCGCCGTGATCCTGGACGCGTACGCGTGGAAGCTGGTGCAGGGGTCGCGG 415
consensus_4851#1      ---------------------------------------------------------