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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 979 fasta sequence
[CACATCTCTATATCCACGCGTTTACAGATTGCTCACCAGTCTGCTGAAGCATTGGCCTACCTTCACTCATGGGCATCGCCTCCAATCCTCCACGGGGACGTCAAGTCATCCAACATTCTCCTTGATGGTGACTTCACAGCGAAGGTCTCTGACTTTGGAGCCTCCATCTTATCGCCAACCGATGATGCACAGTTCGTCACGTTTGTGCAGGGAACTCGTGGGTACCTTGACCCAGAGTACATGCAAACATGGAAATTAACGGATAAGAGTGATGTATACAGTTTTGGGGTTGTTGTCCTAGAGCTACTCACGAGAAAGAAACCATTAAATTTTGACGGGCTAGAGGATGAGAAAAGCCTATCTGTGAGGTTCCTTTCTGCTGTCAAGGAGAACAAGCTTGAGGAAATCTTGGATGATCAAATTAAGAGCGAGGAGAATATGGAGATTCTTGAAGAGATTGCTGAGTTGGCCAGACGATGCTTGGAAATGTGTGGTGAGAATAGGCCATCAATGAAGGAAGTTGCAGAAAAGCTTGATAGCTTGAGAAAGGTTTTGCACCATCCTTGGGCACTGCACAATCTTGAAGAGGCGGAGAGCTTGCTAGGAGAGTCATCAATTGTTAGCTCGGAGGTTGTCAGTACGGGAAATTTCAGCATTGAGAAGAAATCTTTAATAGGCCTAGAATCAGGAAGATAATCGCTAATAACCTTGTTGTATATCATATCCCAGGAAATTATATAGGTATACTCCAAAAGTATTACATGTATAGGTAATCGTCATCATATATGGAATGATTCATACATGTTTTATATGTGTAGCTCAAGGTTGCATCATTGTTAAGATCCAAAGGTGAGGTTGTTGTTTCAATTGCTATTGTAGCTTTACCTTTCAAAAATCTATGTACAATAGTAATTGATTTGATATTTGACACACATTTTCTTTTTATAGTTTGATCAATTCTCATACTGCTAACAAATCA]
[+] EMBL AK060211 [CACATCTCTATATCCACGCGTTTACAGATTGCTCACCAGTCTGCTGAAGCATTGGCCTACCTTCACTCATGGGCATCGCCTCCAATCCTCCACGGGGACGTCAAGTCATCCAACATTCTCCTTGATGGTGACTTCACAGCGAAGGTCTCTGACTTTGGAGCCTCCATCTTATCGCCAACCGATGATGCACAGTTCGTCACGTTTGTGCAGGGAACTCGTGGGTACCTTGACCCAGAGTACATGCAAACATGGAAATTAACGGATAAGAGTGATGTATACAGTTTTGGGGTTGTTGTCCTAGAGCTACTCACGAGAAAGAAACCATTAAATTTTGACGGGCTAGAGGATGAGAAAAGCCTATCTGTGAGGTTCCTTTCTGCTGTCAAGGAGAACAAGCTTGAGGAAATCTTGGATGATCAAATTAAGAGCGAGGAGAATATGGAGATTCTTGAAGAGATTGCTGAGTTGGCCAGACGATGCTTGGAAATGTGTGGTGAGAATAGGCCATCAATGAAGGAAGTTGCAGAAAAGCTTGATAGCTTGAGAAAGGTTTTGCACCATCCTTGGGCACTGCACAATCTTGAAGAGGCGGAGAGCTTGCTAGGAGAGTCATCAATTGTTAGCTCGGAGGTTGTCAGTACGGGAAATTTCAGCATTGAGAAGAAATCTTTAATAGGCCTAGAATCAGGAAGATAATCGCTAATAACCTTGTTGTATATCATATCCCAGGAAATTATATAGGTATACTCCAAAAGTATTACATGTATAGGTAATCGTCATCATATATGGAATGATTCATACATGTTTTATATGTGTAGCTCAAGGTTGCATCATTGTTAAGATCCAAAGGTGAGG ]
[-] EMBL CF307505 [ AAACCATTAAATTTTGACGGGCTAGAGGATGAGAAAAGCCTATCTGTGAGGTTCCTTTCTGCTGTCAAGGAGAACAAGCTTGAGGAAATCTTGGATGATCAAATTAAGAGCGAGGAGAATATGGAGATTCTTGAAGAGATTGCTGAGTTGGCCAGACGATGCTTGGAAATGTGTGGTGAGAATAGGCCATCAATGAAGGAAGTTGCAGAAAAGCTTGATAGCTTGAGAAAGGTTTTGCACCATCCTTGGGCACTGCACAATCTTGAAGAGGCGGAGAGCTTACTAGGAGAGTCATCAATTGTTAGCTTGGAGGTTGTCAGTACGGGAAATTTCAGCATTGAGAAGAAATCTTTAATAGGCCTAGAATCAGGAAGATAATCGCTAATAACCTTGTTGTATATCATATCCCAGGAAATTATATAGGTATACTCCAAAAGTATTACATGTATAGGTAATCGTCATCATATATGGAATGATTCATACATGTTTTATATGTGTAGCTCAAGGTTGCATCATTGTTAAGATCCAAAGGTGAGGTTGTTGTTTCAATTGCTATTGTAGCTTTACCTTTCAAAAATCTATGTACAATAGTAATTGATTTGATATTTGACACACATTTTCTTTTTATAGTTTGATCAATTCTCATACTGCTAACAAATCA]
consensusID : consensus_4858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence
[GGGCTAGAGGATGAGAAAAGCCTATCTGTGAGGTTCCTTTCTGCTGTCAAGGAGAACAAGCTTGAGAAAATCTTGGATGATCAAATTAAGAGCGAGGAGAATATGGAGATTCTTGAAGAGATTGCTGAGTTGGCCAGACGATGCTTGGAAATGTGTGGTGAGAATAGGCCATCAATGAAGGAAGTTGCAGAAAAGCTTGATAGCTTGAGAAAGGTTTTGCACCATCCTTGGGCACTGCACAATCTTGAAGAGGCGGAGAGCTTACTAGGAGAGTCATCAATTGTTAGCTCGGAGGTTGTCAGTACGGGGAAATTTCAGCATTGAGAAGAAATCTTTAATAGGCCTAGAATCAGGAAGATAATCACTAATAACCTTGGTGNATATCATATCCCAGGAAATTATATAGGTATACTCCAAAAGTATATGGGAATGATTCATACATGNTTTATATGTGTAGCTCAAGGNTGCATCATTGGTNAGATCCAAAGGNGANGGTTGGTGNTTCAATTGCTNTTGNAGCTTTACCTTTCAAAAATCTATGTNCCATAGTAATTG]
[+] EMBL CA765520 [GGGCTAGAGGATGAGAAAAGCCTATCTGTGAGGTTCCTTTCTGCTGTCAAGGAGAACAAGCTTGAGAAAATCTTGGATGATCAAATTAAGAGCGAGGAGAATATGGAGATTCTTGAAGAGATTGCTGAGTTGGCCAGACGATGCTTGGAAATGTGTGGTGAGAATAGGCCATCAATGAAGGAAGTTGCAGAAAAGCTTGATAGCTTGAGAAAGGTTTTGCACCATCCTTGGGCACTGCACAATCTTGAAGAGGCGGAGAGCTTACTAGGAGAGTCATCAATTGTTAGCTCGGAGGTTGTCAGTACGGGGAAATTTCAGCATTGAGAAGAAATCTTTAATAGGCCTAGAATCAGGAAGATAATCACTAATAACCTTGGTGNATATCATATCCCAGGAAATTATATAGGTATACTCCAAAAGTATATGGGAATGATTCATACATGNTTTATATGTGTAGCTCAAGGNTGCATCATTGGTNAGATCCAAAGGNGANGGTTGGTGNTTCAATTGCTNTTGNAGCTTTACCTTTCAAAAATCTATGTNCCATAGTAATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4858#0 CACATCTCTATATCCACGCGTTTACAGATTGCTCACCAGTCTGCTGAAGCATTGGCCTAC 60
consensus_4858#1 ------------------------------------------------------------
consensus_4858#0 CTTCACTCATGGGCATCGCCTCCAATCCTCCACGGGGACGTCAAGTCATCCAACATTCTC 120
consensus_4858#1 ------------------------------------------------------------
consensus_4858#0 CTTGATGGTGACTTCACAGCGAAGGTCTCTGACTTTGGAGCCTCCATCTTATCGCCAACC 180
consensus_4858#1 ------------------------------------------------------------
consensus_4858#0 GATGATGCACAGTTCGTCACGTTTGTGCAGGGAACTCGTGGGTACCTTGACCCAGAGTAC 240
consensus_4858#1 ------------------------------------------------------------
consensus_4858#0 ATGCAAACATGGAAATTAACGGATAAGAGTGATGTATACAGTTTTGGGGTTGTTGTCCTA 300
consensus_4858#1 ------------------------------------------------------------
consensus_4858#0 GAGCTACTCACGAGAAAGAAACCATTAAATTTTGACGGGCTAGAGGATGAGAAAAGCCTA 360
consensus_4858#1 ------------------------------------GGGCTAGAGGATGAGAAAAGCCTA 24
************************
consensus_4858#0 TCTGTGAGGTTCCTTTCTGCTGTCAAGGAGAACAAGCTTGAGGAAATCTTGGATGATCAA 420
consensus_4858#1 TCTGTGAGGTTCCTTTCTGCTGTCAAGGAGAACAAGCTTGAGAAAATCTTGGATGATCAA 84
****************************************** *****************
consensus_4858#0 ATTAAGAGCGAGGAGAATATGGAGATTCTTGAAGAGATTGCTGAGTTGGCCAGACGATGC 480
consensus_4858#1 ATTAAGAGCGAGGAGAATATGGAGATTCTTGAAGAGATTGCTGAGTTGGCCAGACGATGC 144
************************************************************
consensus_4858#0 TTGGAAATGTGTGGTGAGAATAGGCCATCAATGAAGGAAGTTGCAGAAAAGCTTGATAGC 540
consensus_4858#1 TTGGAAATGTGTGGTGAGAATAGGCCATCAATGAAGGAAGTTGCAGAAAAGCTTGATAGC 204
************************************************************
consensus_4858#0 TTGAGAAAGGTTTTGCACCATCCTTGGGCACTGCACAATCTTGAAGAGGCGGAGAGCTTG 600
consensus_4858#1 TTGAGAAAGGTTTTGCACCATCCTTGGGCACTGCACAATCTTGAAGAGGCGGAGAGCTTA 264
***********************************************************
consensus_4858#0 CTAGGAGAGTCATCAATTGTTAGCTCGGAGGTTGTCAGTACGGG-AAATTTCAGCATTGA 659
consensus_4858#1 CTAGGAGAGTCATCAATTGTTAGCTCGGAGGTTGTCAGTACGGGGAAATTTCAGCATTGA 324
******************************************** ***************
consensus_4858#0 GAAGAAATCTTTAATAGGCCTAGAATCAGGAAGATAATCGCTAATAACCTTGTTGTATAT 719
consensus_4858#1 GAAGAAATCTTTAATAGGCCTAGAATCAGGAAGATAATCACTAATAACCTTGGTGNATAT 384
*************************************** ************ ** ****
consensus_4858#0 CATATCCCAGGAAATTATATAGGTATACTCCAAAAGTATTACATGTATAGGTAATCGTCA 779
consensus_4858#1 CATATCCCAGGAAATTATATAGGTATACTCCAAAAGTAT---ATG--------------- 426
*************************************** ***
consensus_4858#0 TCATATATGGAATGATTCATACATGTTTTATATGTGTAGCTCAAGGTTGCATCATTGTTA 839
consensus_4858#1 --------GGAATGATTCATACATGNTTTATATGTGTAGCTCAAGGNTGCATCATTGGTN 478
***************** ******************** ********** *
consensus_4858#0 AGATCCAAAGGTGAGG-TTGTTGTTTCAATTGCTATTGTAGCTTTACCTTTCAAAAATCT 898
consensus_4858#1 AGATCCAAAGGNGANGGTTGGTGNTTCAATTGCTNTTGNAGCTTTACCTTTCAAAAATCT 538
*********** ** * *** ** ********** *** *********************
consensus_4858#0 ATGTACAATAGTAATTGATTTGATATTTGACACACATTTTCTTTTTATAGTTTGATCAAT 958
consensus_4858#1 ATGTNCCATAGTAATTG------------------------------------------- 555
**** * **********
consensus_4858#0 TCTCATACTGCTAACAAATCA 979
consensus_4858#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||